RNA–Protein interactions for RNA: ENST00000566370.1

LINC00563-201, long intergenic non-protein coding RNA 563, humanhuman

BASIC

Gene LINC00563, Length 1,400 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00563-201ENST00000566370 CCDC8Q9H0W5 538 aaPredicted RBP16.1■□□□□ 0.17
LINC00563-201ENST00000566370 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.1■□□□□ 0.17
LINC00563-201ENST00000566370 LRP6O75581 1613 aa16.09■□□□□ 0.17
LINC00563-201ENST00000566370 ATP5J2-PTCD1G3V325 749 aa16.09■□□□□ 0.17
LINC00563-201ENST00000566370 PTCD1O75127 700 aaKnown RBP16.09■□□□□ 0.17
LINC00563-201ENST00000566370 ATP5JP18859 108 aa16.09■□□□□ 0.17
LINC00563-201ENST00000566370 MRE11P49959 708 aa16.09■□□□□ 0.17
LINC00563-201ENST00000566370 ZSCAN31Q96LW9 406 aaPredicted RBP16.09■□□□□ 0.17
LINC00563-201ENST00000566370 TM6SF1Q9BZW5 370 aa16.09■□□□□ 0.17
LINC00563-201ENST00000566370 GPR108Q9NPR9 543 aa16.09■□□□□ 0.17
LINC00563-201ENST00000566370 ATG3Q9NT62 314 aa16.09■□□□□ 0.17
LINC00563-201ENST00000566370 PALD1Q9ULE6 856 aa16.09■□□□□ 0.17
LINC00563-201ENST00000566370 CHMP3Q9Y3E7 222 aa16.09■□□□□ 0.17
LINC00563-201ENST00000566370 SNX14Q9Y5W7 946 aa16.09■□□□□ 0.17
LINC00563-201ENST00000566370 CCDC171Q6TFL3 1326 aa16.08■□□□□ 0.17
LINC00563-201ENST00000566370 CYP2E1P05181 493 aaPredicted RBP16.08■□□□□ 0.16
LINC00563-201ENST00000566370 PDIA4P13667 645 aaKnown RBP16.08■□□□□ 0.16
LINC00563-201ENST00000566370 HSP90AB3PQ58FF7 597 aa16.08■□□□□ 0.16
LINC00563-201ENST00000566370 TNNI3KQ59H18 835 aa16.08■□□□□ 0.16
LINC00563-201ENST00000566370 CDCA7Q9BWT1 371 aaPredicted RBP16.08■□□□□ 0.16
LINC00563-201ENST00000566370 GZF1Q9H116 711 aaPredicted RBP16.08■□□□□ 0.16
LINC00563-201ENST00000566370 CYP46A1Q9Y6A2 500 aa16.08■□□□□ 0.16
LINC00563-201ENST00000566370 FPGT-TNNI3KV9GXZ4 949 aa16.08■□□□□ 0.16
LINC00563-201ENST00000566370 AHDC1Q5TGY3 1603 aaPredicted RBP16.08■□□□□ 0.16
LINC00563-201ENST00000566370 COL22A1Q8NFW1 1626 aaPredicted RBP16.08■□□□□ 0.16
LINC00563-201ENST00000566370 NBPF26B4DH59 902 aa16.07■□□□□ 0.16
LINC00563-201ENST00000566370 IL15P40933 162 aaPredicted RBP16.07■□□□□ 0.16
LINC00563-201ENST00000566370 PTPN12Q05209 780 aaKnown RBP16.07■□□□□ 0.16
LINC00563-201ENST00000566370 KLHL40Q2TBA0 621 aa16.07■□□□□ 0.16
LINC00563-201ENST00000566370 LRRFIP1Q32MZ4 808 aaKnown RBP16.07■□□□□ 0.16
LINC00563-201ENST00000566370 NBPF14Q5TI25 921 aa16.07■□□□□ 0.16
LINC00563-201ENST00000566370 NBPF10Q6P3W6 841 aaKnown RBP16.07■□□□□ 0.16
LINC00563-201ENST00000566370 LMBR1LQ6UX01 489 aa16.07■□□□□ 0.16
LINC00563-201ENST00000566370 NBPF15Q8N660 670 aa16.07■□□□□ 0.16
LINC00563-201ENST00000566370 BTG4Q9NY30 223 aa16.07■□□□□ 0.16
LINC00563-201ENST00000566370 HMG20BQ9P0W2 317 aa16.07■□□□□ 0.16
LINC00563-201ENST00000566370 FBXO3Q9UK99 471 aa16.07■□□□□ 0.16
LINC00563-201ENST00000566370 DDX49Q9Y6V7 483 aaKnown RBP16.07■□□□□ 0.16
LINC00563-201ENST00000566370 WDR33Q9C0J8 1336 aaKnown RBP16.07■□□□□ 0.16
LINC00563-201ENST00000566370 RFX5P48382 616 aaPredicted RBP16.06■□□□□ 0.16
LINC00563-201ENST00000566370 PIP4K2AP48426 406 aaPredicted RBP16.06■□□□□ 0.16
LINC00563-201ENST00000566370 ANKRD1Q15327 319 aa16.06■□□□□ 0.16
LINC00563-201ENST00000566370 EPHA10Q5JZY3 1008 aa16.06■□□□□ 0.16
LINC00563-201ENST00000566370 MCTP1Q6DN14 999 aa16.06■□□□□ 0.16
LINC00563-201ENST00000566370 UPF3BQ9BZI7 483 aaKnown RBP16.06■□□□□ 0.16
LINC00563-201ENST00000566370 SH2B1Q9NRF2 756 aaPredicted RBP16.06■□□□□ 0.16
LINC00563-201ENST00000566370 LIMCH1Q9UPQ0 1083 aa16.06■□□□□ 0.16
LINC00563-201ENST00000566370 NCLP19338 710 aaKnown RBP16.05■□□□□ 0.16
LINC00563-201ENST00000566370 TFCP2Q12800 502 aa16.05■□□□□ 0.16
LINC00563-201ENST00000566370 KRT32Q14532 448 aa16.05■□□□□ 0.16
LINC00563-201ENST00000566370 VPS53Q5VIR6 699 aa16.05■□□□□ 0.16
LINC00563-201ENST00000566370 ZGPATQ8N5A5 531 aaKnown RBP16.05■□□□□ 0.16
LINC00563-201ENST00000566370 BOLA2Q9H3K6 86 aa16.05■□□□□ 0.16
LINC00563-201ENST00000566370 SNRKQ9NRH2 765 aa16.05■□□□□ 0.16
LINC00563-201ENST00000566370 TOGARAM1Q9Y4F4 1720 aa16.05■□□□□ 0.16
LINC00563-201ENST00000566370 TJP1Q07157 1748 aa16.04■□□□□ 0.16
LINC00563-201ENST00000566370 CIAO1O76071 339 aa16.04■□□□□ 0.16
LINC00563-201ENST00000566370 A1BGP04217 495 aa16.04■□□□□ 0.16
LINC00563-201ENST00000566370 CASTP20810 708 aaKnown RBP16.04■□□□□ 0.16
LINC00563-201ENST00000566370 CASP7P55210 303 aa16.04■□□□□ 0.16
LINC00563-201ENST00000566370 NMIQ13287 307 aaPredicted RBP16.04■□□□□ 0.16
LINC00563-201ENST00000566370 ZBTB3Q9H5J0 574 aa16.04■□□□□ 0.16
LINC00563-201ENST00000566370 ATP6V1DQ9Y5K8 247 aa16.04■□□□□ 0.16
LINC00563-201ENST00000566370 ROBO1Q9Y6N7 1651 aa16.04■□□□□ 0.16
LINC00563-201ENST00000566370 FSD2A1L4K1 749 aa16.03■□□□□ 0.16
LINC00563-201ENST00000566370 EXOC5O00471 708 aa16.03■□□□□ 0.16
LINC00563-201ENST00000566370 MBD3O95983 291 aa16.03■□□□□ 0.16
LINC00563-201ENST00000566370 TRIM28Q13263 835 aaKnown RBP16.03■□□□□ 0.16
LINC00563-201ENST00000566370 TCIRG1Q13488 830 aa16.03■□□□□ 0.16
LINC00563-201ENST00000566370 PRPF40BQ6NWY9 871 aaKnown RBP16.03■□□□□ 0.16
LINC00563-201ENST00000566370 TTLL7Q6ZT98 887 aa16.03■□□□□ 0.16
LINC00563-201ENST00000566370 NOL8Q76FK4 1167 aaKnown RBP16.03■□□□□ 0.16
LINC00563-201ENST00000566370 ANP32BQ92688 251 aaKnown RBP16.03■□□□□ 0.16
LINC00563-201ENST00000566370 KCNB2Q92953 911 aa16.03■□□□□ 0.16
LINC00563-201ENST00000566370 JAKMIP1Q96N16 626 aaKnown RBP16.03■□□□□ 0.16
LINC00563-201ENST00000566370 PDRG1Q9NUG6 133 aa16.03■□□□□ 0.16
LINC00563-201ENST00000566370 AKAP2Q9Y2D5 859 aa16.03■□□□□ 0.16
LINC00563-201ENST00000566370 RBM8AQ9Y5S9 174 aaKnown RBP16.03■□□□□ 0.16
LINC00563-201ENST00000566370 WNK3Q9BYP7 1800 aa16.03■□□□□ 0.16
LINC00563-201ENST00000566370 FOXO4P98177 505 aa16.02■□□□□ 0.16
LINC00563-201ENST00000566370 KLHDC4Q8TBB5 520 aa16.02■□□□□ 0.16
LINC00563-201ENST00000566370 MAP4K1Q92918 833 aa16.02■□□□□ 0.16
LINC00563-201ENST00000566370 ITGB4P16144 1822 aa16.02■□□□□ 0.16
LINC00563-201ENST00000566370 SPEF2Q9C093 1822 aa16.02■□□□□ 0.16
LINC00563-201ENST00000566370 DISP2A7MBM2 1401 aa16.02■□□□□ 0.15
LINC00563-201ENST00000566370 EYA2O00167 538 aa16.02■□□□□ 0.15
LINC00563-201ENST00000566370 BRD1O95696 1058 aa16.02■□□□□ 0.15
LINC00563-201ENST00000566370 PCCAP05165 728 aaPredicted RBP16.02■□□□□ 0.15
LINC00563-201ENST00000566370 CCDC57Q2TAC2 916 aa16.02■□□□□ 0.15
LINC00563-201ENST00000566370 TAF7LQ5H9L4 462 aa16.02■□□□□ 0.15
LINC00563-201ENST00000566370 SYAP1Q96A49 352 aaPredicted RBP16.02■□□□□ 0.15
LINC00563-201ENST00000566370 HAUS7Q99871 368 aa16.02■□□□□ 0.15
LINC00563-201ENST00000566370 ISCA1Q9BUE6 129 aa16.02■□□□□ 0.15
LINC00563-201ENST00000566370 ZSWIM6Q9HCJ5 1215 aa16.02■□□□□ 0.15
LINC00563-201ENST00000566370 TLR7Q9NYK1 1049 aaKnown RBP16.02■□□□□ 0.15
LINC00563-201ENST00000566370 SMC3Q9UQE7 1217 aa16.02■□□□□ 0.15
LINC00563-201ENST00000566370 U3KPZ7 1027 aaPredicted RBP16.02■□□□□ 0.15
LINC00563-201ENST00000566370 AK2P54819 239 aa16.01■□□□□ 0.15
LINC00563-201ENST00000566370 NECTIN1Q15223 517 aa16.01■□□□□ 0.15
LINC00563-201ENST00000566370 CSPP1Q1MSJ5 1256 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms