RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, human

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-215	ENST00000565236	APLP1	P51693	650 aa		29.23	■■■□□ 2.27
CLN3-215	ENST00000565236	FSTL1	Q12841	308 aa		29.23	■■■□□ 2.27
CLN3-215	ENST00000565236	UTP14A	Q9BVJ6	771 aa	Known RBP	29.23	■■■□□ 2.27
CLN3-215	ENST00000565236	CHPF2	Q9P2E5	772 aa		29.23	■■■□□ 2.27
CLN3-215	ENST00000565236	FKBP4	Q02790	459 aa	Known RBP eCLIP	29.22	■■■□□ 2.27
CLN3-215	ENST00000565236	OLFM4	Q6UX06	510 aa		29.22	■■■□□ 2.27
CLN3-215	ENST00000565236	MBIP	Q9NS73	344 aa		29.22	■■■□□ 2.27
CLN3-215	ENST00000565236	RIC1	Q4ADV7	1423 aa		29.21	■■■□□ 2.27
CLN3-215	ENST00000565236	HOXA10	P31260	410 aa	Predicted RBP	29.21	■■■□□ 2.27
CLN3-215	ENST00000565236	DUSP27	Q5VZP5	1158 aa		29.21	■■■□□ 2.27
CLN3-215	ENST00000565236	GNAI1	P63096	354 aa		29.2	■■■□□ 2.26
CLN3-215	ENST00000565236	RBM17	Q96I25	401 aa	Known RBP	29.2	■■■□□ 2.26
CLN3-215	ENST00000565236	NLRP3	Q96P20	1036 aa		29.2	■■■□□ 2.26
CLN3-215	ENST00000565236	IFT57	Q9NWB7	429 aa		29.2	■■■□□ 2.26
CLN3-215	ENST00000565236	DBF4	Q9UBU7	674 aa	Predicted RBP	29.2	■■■□□ 2.26
CLN3-215	ENST00000565236	ZNF316	A6NFI3	1004 aa	Predicted RBP	29.19	■■■□□ 2.26
CLN3-215	ENST00000565236	ZNF853	P0CG23	659 aa		29.19	■■■□□ 2.26
CLN3-215	ENST00000565236	TCIRG1	Q13488	830 aa		29.19	■■■□□ 2.26
CLN3-215	ENST00000565236	CCDC184	Q52MB2	194 aa		29.18	■■■□□ 2.26
CLN3-215	ENST00000565236	SLC10A5	Q5PT55	438 aa		29.18	■■■□□ 2.26
CLN3-215	ENST00000565236	SMC1B	Q8NDV3	1235 aa		29.18	■■■□□ 2.26
CLN3-215	ENST00000565236	ZNF277	Q9NRM2	450 aa	Predicted RBP	29.18	■■■□□ 2.26
CLN3-215	ENST00000565236	CC2D2B	Q6DHV5	1058 aa		29.17	■■■□□ 2.26
CLN3-215	ENST00000565236	NLRP10	Q86W26	655 aa		29.17	■■■□□ 2.26
CLN3-215	ENST00000565236	CRAMP1	Q96RY5	1269 aa		29.17	■■■□□ 2.26
CLN3-215	ENST00000565236	ANKRD13D	Q6ZTN6	518 aa		29.16	■■■□□ 2.26
CLN3-215	ENST00000565236	SYNE4	Q8N205	404 aa		29.16	■■■□□ 2.26
CLN3-215	ENST00000565236	HYPK	Q9NX55	129 aa		29.16	■■■□□ 2.26
CLN3-215	ENST00000565236	RNF123	Q5XPI4	1314 aa		29.16	■■■□□ 2.26
CLN3-215	ENST00000565236	POTEC	B2RU33	542 aa		29.15	■■■□□ 2.26
CLN3-215	ENST00000565236	DDN	O94850	711 aa	Predicted RBP	29.15	■■■□□ 2.26
CLN3-215	ENST00000565236	C3orf67	Q6ZVT6	689 aa		29.15	■■■□□ 2.26
CLN3-215	ENST00000565236	PLBD2	Q8NHP8	589 aa		29.15	■■■□□ 2.26
CLN3-215	ENST00000565236	TRMT112	Q9UI30	125 aa	Known RBP	29.15	■■■□□ 2.26
CLN3-215	ENST00000565236	GRIPAP1	Q4V328	841 aa		29.13	■■■□□ 2.25
CLN3-215	ENST00000565236	WDR90	Q96KV7	1748 aa		29.13	■■■□□ 2.25
CLN3-215	ENST00000565236	ANKRD36C	Q5JPF3	1778 aa		29.12	■■■□□ 2.25
CLN3-215	ENST00000565236	ELL2	O00472	640 aa	Predicted RBP	29.12	■■■□□ 2.25
CLN3-215	ENST00000565236	TCERG1	O14776	1098 aa	Known RBP	29.12	■■■□□ 2.25
CLN3-215	ENST00000565236	ANP32C	O43423	234 aa		29.12	■■■□□ 2.25
CLN3-215	ENST00000565236	IARS	P41252	1262 aa	Known RBP	29.12	■■■□□ 2.25
CLN3-215	ENST00000565236	PSMD1	Q99460	953 aa		29.12	■■■□□ 2.25
CLN3-215	ENST00000565236	PPEF1	O14829	653 aa	Predicted RBP	29.11	■■■□□ 2.25
CLN3-215	ENST00000565236	TMX4	Q9H1E5	349 aa	Predicted RBP	29.11	■■■□□ 2.25
CLN3-215	ENST00000565236	HCLS1	P14317	486 aa	Predicted RBP	29.1	■■■□□ 2.25
CLN3-215	ENST00000565236	SH3TC1	Q8TE82	1336 aa		29.1	■■■□□ 2.25
CLN3-215	ENST00000565236	JDP2	Q8WYK2	163 aa		29.08	■■■□□ 2.25
CLN3-215	ENST00000565236	MRS2	Q9HD23	443 aa		29.08	■■■□□ 2.25
CLN3-215	ENST00000565236	C8orf58	Q8NAV2	365 aa		29.07	■■■□□ 2.24
CLN3-215	ENST00000565236	ZNF428	Q96B54	188 aa		29.07	■■■□□ 2.24
CLN3-215	ENST00000565236	CHMP4A	Q9BY43	222 aa		29.07	■■■□□ 2.24
CLN3-215	ENST00000565236	SNED1	Q8TER0	1413 aa		29.06	■■■□□ 2.24
CLN3-215	ENST00000565236	IQCA1L	A6NCM1	817 aa		29.06	■■■□□ 2.24
CLN3-215	ENST00000565236	ATP5J2-PTCD1	G3V325	749 aa		29.06	■■■□□ 2.24
CLN3-215	ENST00000565236	DNAJC5G	Q8N7S2	189 aa		29.06	■■■□□ 2.24
CLN3-215	ENST00000565236	ISCA1	Q9BUE6	129 aa		29.06	■■■□□ 2.24
CLN3-215	ENST00000565236	BBOX1	O75936	387 aa		29.05	■■■□□ 2.24
CLN3-215	ENST00000565236	RIC3	Q7Z5B4	369 aa		29.05	■■■□□ 2.24
CLN3-215	ENST00000565236	ATP6V0A2	Q9Y487	856 aa		29.05	■■■□□ 2.24
CLN3-215	ENST00000565236	ABCC4	O15439	1325 aa		29.04	■■■□□ 2.24
CLN3-215	ENST00000565236	ZNF541	Q9H0D2	1346 aa		29.04	■■■□□ 2.24
CLN3-215	ENST00000565236	FZD9	O00144	591 aa		29.04	■■■□□ 2.24
CLN3-215	ENST00000565236	HTRA3	P83110	453 aa		29.04	■■■□□ 2.24
CLN3-215	ENST00000565236	GOLGA2	Q08379	1002 aa		29.04	■■■□□ 2.24
CLN3-215	ENST00000565236	CCDC27	Q2M243	656 aa		29.04	■■■□□ 2.24
CLN3-215	ENST00000565236	DDX46	Q7L014	1031 aa	Known RBP	29.04	■■■□□ 2.24
CLN3-215	ENST00000565236	L3MBTL3	Q96JM7	780 aa	Predicted RBP	29.04	■■■□□ 2.24
CLN3-215	ENST00000565236	PHAX	Q9H814	394 aa	Known RBP	29.04	■■■□□ 2.24
CLN3-215	ENST00000565236	CCDC30	Q5VVM6	783 aa		29.02	■■■□□ 2.24
CLN3-215	ENST00000565236	SLC51A	Q86UW1	340 aa		29.02	■■■□□ 2.24
CLN3-215	ENST00000565236	WWC1	Q8IX03	1113 aa		29.02	■■■□□ 2.24
CLN3-215	ENST00000565236	LARGE2	Q8N3Y3	721 aa		29.02	■■■□□ 2.24
CLN3-215	ENST00000565236	FAM89A	Q96GI7	184 aa		29.02	■■■□□ 2.24
CLN3-215	ENST00000565236	TRIM28	Q13263	835 aa	Known RBP	29.01	■■■□□ 2.23
CLN3-215	ENST00000565236	EIF6	P56537	245 aa	Known RBP	29	■■■□□ 2.23
CLN3-215	ENST00000565236	CHADL	Q6NUI6	762 aa		29	■■■□□ 2.23
CLN3-215	ENST00000565236	SP8	Q8IXZ3	490 aa		29	■■■□□ 2.23
CLN3-215	ENST00000565236	TSR2	Q969E8	191 aa	Known RBP	29	■■■□□ 2.23
CLN3-215	ENST00000565236	LAMB2	P55268	1798 aa		28.99	■■■□□ 2.23
CLN3-215	ENST00000565236	GPC2	Q8N158	579 aa		28.99	■■■□□ 2.23
CLN3-215	ENST00000565236	TSPYL6	Q8N831	410 aa		28.99	■■■□□ 2.23
CLN3-215	ENST00000565236	TAF1D	Q9H5J8	278 aa	Predicted RBP	28.99	■■■□□ 2.23
CLN3-215	ENST00000565236	HACL1	Q9UJ83	578 aa		28.99	■■■□□ 2.23
CLN3-215	ENST00000565236	SCN4A	P35499	1836 aa		28.99	■■■□□ 2.23
CLN3-215	ENST00000565236	GRAP	Q13588	217 aa		28.98	■■■□□ 2.23
CLN3-215	ENST00000565236	RTL5	Q5HYW3	569 aa	Predicted RBP	28.98	■■■□□ 2.23
CLN3-215	ENST00000565236	GRAPL	Q8TC17	118 aa	Predicted RBP	28.98	■■■□□ 2.23
CLN3-215	ENST00000565236	POTEI	P0CG38	1075 aa		28.97	■■■□□ 2.23
CLN3-215	ENST00000565236	POTEJ	P0CG39	1038 aa		28.97	■■■□□ 2.23
CLN3-215	ENST00000565236	NCBP3	Q53F19	620 aa	Known RBP	28.97	■■■□□ 2.23
CLN3-215	ENST00000565236	SUPT20H	Q8NEM7	779 aa		28.97	■■■□□ 2.23
CLN3-215	ENST00000565236	VPS33B	Q9H267	617 aa		28.97	■■■□□ 2.23
CLN3-215	ENST00000565236	PPIP5K2	O43314	1243 aa		28.96	■■■□□ 2.23
CLN3-215	ENST00000565236	DDX58	O95786	925 aa	Known RBP	28.96	■■■□□ 2.23
CLN3-215	ENST00000565236	DPP8	Q6V1X1	898 aa	Predicted RBP	28.96	■■■□□ 2.23
CLN3-215	ENST00000565236	KLRG1	Q96E93	195 aa		28.96	■■■□□ 2.23
CLN3-215	ENST00000565236	MYD88	Q99836	296 aa		28.96	■■■□□ 2.23
CLN3-215	ENST00000565236	GJA3	Q9Y6H8	435 aa		28.96	■■■□□ 2.23
CLN3-215	ENST00000565236	SF3B3	Q15393	1217 aa	Known RBP	28.95	■■■□□ 2.22
CLN3-215	ENST00000565236	LDHD	Q86WU2	507 aa		28.95	■■■□□ 2.22

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms