RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 ALDH1B1P30837 517 aa17.23■□□□□ 0.35
CLK3-213ENST00000563842 NUTM1Q86Y26 1132 aa17.23■□□□□ 0.35
CLK3-213ENST00000563842 TSPYL6Q8N831 410 aa17.23■□□□□ 0.35
CLK3-213ENST00000563842 NTSR2O95665 410 aa17.22■□□□□ 0.35
CLK3-213ENST00000563842 ERFEQ4G0M1 354 aa17.22■□□□□ 0.35
CLK3-213ENST00000563842 SOGA3Q5TF21 947 aa17.22■□□□□ 0.35
CLK3-213ENST00000563842 RIC3Q7Z5B4 369 aa17.22■□□□□ 0.35
CLK3-213ENST00000563842 FER1L6Q2WGJ9 1857 aa17.22■□□□□ 0.35
CLK3-213ENST00000563842 NLRP10Q86W26 655 aa17.21■□□□□ 0.35
CLK3-213ENST00000563842 NLRP3Q96P20 1036 aa17.2■□□□□ 0.34
CLK3-213ENST00000563842 PHAXQ9H814 394 aaKnown RBP17.2■□□□□ 0.34
CLK3-213ENST00000563842 TRMT112Q9UI30 125 aaKnown RBP17.2■□□□□ 0.34
CLK3-213ENST00000563842 TNRC6CQ9HCJ0 1690 aaKnown RBP17.2■□□□□ 0.34
CLK3-213ENST00000563842 DICER1Q9UPY3 1922 aaKnown RBP17.19■□□□□ 0.34
CLK3-213ENST00000563842 ADCY9O60503 1353 aa17.19■□□□□ 0.34
CLK3-213ENST00000563842 ABCC12Q96J65 1359 aa17.19■□□□□ 0.34
CLK3-213ENST00000563842 TRIM28Q13263 835 aaKnown RBP17.19■□□□□ 0.34
CLK3-213ENST00000563842 CRY2Q49AN0 593 aa17.19■□□□□ 0.34
CLK3-213ENST00000563842 SLC10A5Q5PT55 438 aa17.19■□□□□ 0.34
CLK3-213ENST00000563842 PRPF40BQ6NWY9 871 aaKnown RBP17.19■□□□□ 0.34
CLK3-213ENST00000563842 RPGRQ92834 1020 aaKnown RBP17.19■□□□□ 0.34
CLK3-213ENST00000563842 ISCA1Q9BUE6 129 aa17.19■□□□□ 0.34
CLK3-213ENST00000563842 SH3TC1Q8TE82 1336 aa17.19■□□□□ 0.34
CLK3-213ENST00000563842 C21orf2O43822 256 aa17.18■□□□□ 0.34
CLK3-213ENST00000563842 EXOSC9Q06265 439 aaKnown RBP17.18■□□□□ 0.34
CLK3-213ENST00000563842 ZNF521Q96K83 1311 aa17.18■□□□□ 0.34
CLK3-213ENST00000563842 LAMB2P55268 1798 aa17.17■□□□□ 0.34
CLK3-213ENST00000563842 VAMP4O75379 141 aa17.17■□□□□ 0.34
CLK3-213ENST00000563842 SLC4A2P04920 1241 aa17.17■□□□□ 0.34
CLK3-213ENST00000563842 C9orf131Q5VYM1 1079 aa17.17■□□□□ 0.34
CLK3-213ENST00000563842 RBM17Q96I25 401 aaKnown RBP17.17■□□□□ 0.34
CLK3-213ENST00000563842 E9PSI1 815 aa17.16■□□□□ 0.34
CLK3-213ENST00000563842 HSP90B1P14625 803 aaKnown RBP17.16■□□□□ 0.34
CLK3-213ENST00000563842 LMNB1P20700 586 aa17.16■□□□□ 0.34
CLK3-213ENST00000563842 HOXA10P31260 410 aaPredicted RBP17.16■□□□□ 0.34
CLK3-213ENST00000563842 KSR2Q6VAB6 950 aa17.16■□□□□ 0.34
CLK3-213ENST00000563842 SPINK5Q9NQ38 1064 aaPredicted RBP17.16■□□□□ 0.34
CLK3-213ENST00000563842 RNF181Q9P0P0 153 aa17.16■□□□□ 0.34
CLK3-213ENST00000563842 ZNF219Q9P2Y4 722 aaPredicted RBP17.16■□□□□ 0.34
CLK3-213ENST00000563842 ATP5J2-PTCD1G3V325 749 aa17.15■□□□□ 0.34
CLK3-213ENST00000563842 NEXNQ0ZGT2 675 aa17.15■□□□□ 0.34
CLK3-213ENST00000563842 CCDC93Q567U6 631 aa17.15■□□□□ 0.34
CLK3-213ENST00000563842 CCDC191Q8NCU4 936 aa17.15■□□□□ 0.34
CLK3-213ENST00000563842 CRAMP1Q96RY5 1269 aa17.15■□□□□ 0.34
CLK3-213ENST00000563842 METTL22Q9BUU2 404 aaPredicted RBP17.15■□□□□ 0.34
CLK3-213ENST00000563842 GPBP1L1Q9HC44 474 aaPredicted RBP17.15■□□□□ 0.34
CLK3-213ENST00000563842 LTBP3Q9NS15 1303 aa17.15■□□□□ 0.34
CLK3-213ENST00000563842 ZC3H4Q9UPT8 1303 aaKnown RBP17.15■□□□□ 0.34
CLK3-213ENST00000563842 DDX60Q8IY21 1712 aaKnown RBP17.14■□□□□ 0.33
CLK3-213ENST00000563842 TCERG1O14776 1098 aaKnown RBP17.14■□□□□ 0.33
CLK3-213ENST00000563842 RASSF7Q02833 373 aa17.14■□□□□ 0.33
CLK3-213ENST00000563842 CC2D2BQ6DHV5 1058 aa17.14■□□□□ 0.33
CLK3-213ENST00000563842 MYD88Q99836 296 aa17.14■□□□□ 0.33
CLK3-213ENST00000563842 TMX4Q9H1E5 349 aaPredicted RBP17.14■□□□□ 0.33
CLK3-213ENST00000563842 TAOK3Q9H2K8 898 aa17.14■□□□□ 0.33
CLK3-213ENST00000563842 PI4KAP2A4QPH2 592 aa17.13■□□□□ 0.33
CLK3-213ENST00000563842 NFKBIEO00221 500 aa17.13■□□□□ 0.33
CLK3-213ENST00000563842 GRIPAP1Q4V328 841 aa17.13■□□□□ 0.33
CLK3-213ENST00000563842 RTKN2Q8IZC4 609 aa17.13■□□□□ 0.33
CLK3-213ENST00000563842 PI4KAP1Q8N8J0 262 aa17.13■□□□□ 0.33
CLK3-213ENST00000563842 C7orf43Q8WVR3 580 aa17.13■□□□□ 0.33
CLK3-213ENST00000563842 MAP3K2Q9Y2U5 619 aa17.13■□□□□ 0.33
CLK3-213ENST00000563842 HCLS1P14317 486 aaPredicted RBP17.12■□□□□ 0.33
CLK3-213ENST00000563842 FLIIQ13045 1269 aa17.12■□□□□ 0.33
CLK3-213ENST00000563842 MIER1Q8N108 512 aa17.12■□□□□ 0.33
CLK3-213ENST00000563842 ZBTB38Q8NAP3 1195 aaPredicted RBP17.12■□□□□ 0.33
CLK3-213ENST00000563842 FAM89AQ96GI7 184 aa17.12■□□□□ 0.33
CLK3-213ENST00000563842 CWC25Q9NXE8 425 aaPredicted RBP17.12■□□□□ 0.33
CLK3-213ENST00000563842 MYH3P11055 1940 aa17.11■□□□□ 0.33
CLK3-213ENST00000563842 TIAM2Q8IVF5 1701 aa17.11■□□□□ 0.33
CLK3-213ENST00000563842 FKBP5Q13451 457 aaPredicted RBP17.11■□□□□ 0.33
CLK3-213ENST00000563842 DDX46Q7L014 1031 aaKnown RBP17.11■□□□□ 0.33
CLK3-213ENST00000563842 IRS4O14654 1257 aaPredicted RBP17.1■□□□□ 0.33
CLK3-213ENST00000563842 PCCAP05165 728 aaPredicted RBP17.1■□□□□ 0.33
CLK3-213ENST00000563842 FKBP4Q02790 459 aaKnown RBP eCLIP17.1■□□□□ 0.33
CLK3-213ENST00000563842 SLFN5Q08AF3 891 aa17.1■□□□□ 0.33
CLK3-213ENST00000563842 G2E3Q7L622 706 aa17.1■□□□□ 0.33
CLK3-213ENST00000563842 SYNE4Q8N205 404 aa17.1■□□□□ 0.33
CLK3-213ENST00000563842 ZNF526Q8TF50 670 aaPredicted RBP17.1■□□□□ 0.33
CLK3-213ENST00000563842 KDM2BQ8NHM5 1336 aa17.1■□□□□ 0.33
CLK3-213ENST00000563842 PPEF1O14829 653 aaPredicted RBP17.09■□□□□ 0.33
CLK3-213ENST00000563842 BBOX1O75936 387 aa17.09■□□□□ 0.33
CLK3-213ENST00000563842 C3orf67Q6ZVT6 689 aa17.09■□□□□ 0.33
CLK3-213ENST00000563842 ZNF428Q96B54 188 aa17.09■□□□□ 0.33
CLK3-213ENST00000563842 TAF1P21675 1872 aa17.09■□□□□ 0.33
CLK3-213ENST00000563842 ABCC4O15439 1325 aa17.08■□□□□ 0.32
CLK3-213ENST00000563842 SF3B3Q15393 1217 aaKnown RBP17.08■□□□□ 0.32
CLK3-213ENST00000563842 RTL5Q5HYW3 569 aaPredicted RBP17.08■□□□□ 0.32
CLK3-213ENST00000563842 TMC4Q7Z404 712 aa17.08■□□□□ 0.32
CLK3-213ENST00000563842 DNAAF4Q8WXU2 420 aa17.08■□□□□ 0.32
CLK3-213ENST00000563842 GRAPQ13588 217 aa17.07■□□□□ 0.32
CLK3-213ENST00000563842 DPY19L2Q6NUT2 758 aa17.07■□□□□ 0.32
CLK3-213ENST00000563842 GRAPLQ8TC17 118 aaPredicted RBP17.07■□□□□ 0.32
CLK3-213ENST00000563842 PSMD1Q99460 953 aa17.07■□□□□ 0.32
CLK3-213ENST00000563842 PDE8AO60658 829 aa17.06■□□□□ 0.32
CLK3-213ENST00000563842 IGKV5-2P06315 115 aa17.06■□□□□ 0.32
CLK3-213ENST00000563842 HSPA6P17066 643 aa17.06■□□□□ 0.32
CLK3-213ENST00000563842 PRELPP51888 382 aa17.06■□□□□ 0.32
CLK3-213ENST00000563842 ATP6V0A2Q9Y487 856 aa17.06■□□□□ 0.32
CLK3-213ENST00000563842 CDHR2Q9BYE9 1310 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms