RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 NLRP10Q86W26 655 aa12.71□□□□□ -0.37
SMG1-208ENST00000563448 ARHGEF1Q92888 912 aaKnown RBP12.71□□□□□ -0.37
SMG1-208ENST00000563448 BCL2L12Q9HB09 334 aa12.71□□□□□ -0.37
SMG1-208ENST00000563448 UBN2Q6ZU65 1347 aa12.71□□□□□ -0.37
SMG1-208ENST00000563448 PHF14O94880 888 aa12.71□□□□□ -0.38
SMG1-208ENST00000563448 TRAPPC3LQ5T215 181 aa12.71□□□□□ -0.38
SMG1-208ENST00000563448 SMC5Q8IY18 1101 aa12.71□□□□□ -0.38
SMG1-208ENST00000563448 CAMKK2Q96RR4 588 aa12.71□□□□□ -0.38
SMG1-208ENST00000563448 SRP68Q9UHB9 627 aaKnown RBP12.71□□□□□ -0.38
SMG1-208ENST00000563448 HDAC5Q9UQL6 1122 aa12.71□□□□□ -0.38
SMG1-208ENST00000563448 HMGB2P26583 209 aaKnown RBP12.7□□□□□ -0.38
SMG1-208ENST00000563448 EN1Q05925 392 aaPredicted RBP12.7□□□□□ -0.38
SMG1-208ENST00000563448 EZH2Q15910 746 aaKnown RBP12.7□□□□□ -0.38
SMG1-208ENST00000563448 EPHA10Q5JZY3 1008 aa12.7□□□□□ -0.38
SMG1-208ENST00000563448 USPL1Q5W0Q7 1092 aa12.7□□□□□ -0.38
SMG1-208ENST00000563448 CLEC4GQ6UXB4 293 aa12.7□□□□□ -0.38
SMG1-208ENST00000563448 BICC1Q9H694 974 aaKnown RBP12.7□□□□□ -0.38
SMG1-208ENST00000563448 RGL2O15211 777 aa12.69□□□□□ -0.38
SMG1-208ENST00000563448 ZNF827Q17R98 1081 aa12.69□□□□□ -0.38
SMG1-208ENST00000563448 RTL5Q5HYW3 569 aaPredicted RBP12.69□□□□□ -0.38
SMG1-208ENST00000563448 PPP1R42Q7Z4L9 355 aa12.69□□□□□ -0.38
SMG1-208ENST00000563448 AKT1S1Q96B36 256 aa12.69□□□□□ -0.38
SMG1-208ENST00000563448 DCTPP1Q9H773 170 aa12.69□□□□□ -0.38
SMG1-208ENST00000563448 ZNF652Q9Y2D9 606 aa12.69□□□□□ -0.38
SMG1-208ENST00000563448 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.69□□□□□ -0.38
SMG1-208ENST00000563448 HMMRO75330 724 aa12.69□□□□□ -0.38
SMG1-208ENST00000563448 PCCAP05165 728 aaPredicted RBP12.69□□□□□ -0.38
SMG1-208ENST00000563448 ADRA2BP18089 450 aa12.69□□□□□ -0.38
SMG1-208ENST00000563448 MTX1Q13505 466 aa12.69□□□□□ -0.38
SMG1-208ENST00000563448 SKAP1Q86WV1 359 aa12.69□□□□□ -0.38
SMG1-208ENST00000563448 SSH3Q8TE77 659 aa12.69□□□□□ -0.38
SMG1-208ENST00000563448 USP42Q9H9J4 1324 aaKnown RBP12.69□□□□□ -0.38
SMG1-208ENST00000563448 ZPR1O75312 459 aa12.68□□□□□ -0.38
SMG1-208ENST00000563448 SSFA2P28290 1259 aa12.68□□□□□ -0.38
SMG1-208ENST00000563448 RFC4P35249 363 aa12.68□□□□□ -0.38
SMG1-208ENST00000563448 POLA2Q14181 598 aa12.68□□□□□ -0.38
SMG1-208ENST00000563448 SUSD4Q5VX71 490 aa12.68□□□□□ -0.38
SMG1-208ENST00000563448 ZBTB38Q8NAP3 1195 aaPredicted RBP12.68□□□□□ -0.38
SMG1-208ENST00000563448 GCC1Q96CN9 775 aa12.68□□□□□ -0.38
SMG1-208ENST00000563448 PDZRN3Q9UPQ7 1066 aa12.68□□□□□ -0.38
SMG1-208ENST00000563448 NIP7Q9Y221 180 aaKnown RBP eCLIP12.68□□□□□ -0.38
SMG1-208ENST00000563448 CDHR2Q9BYE9 1310 aa12.67□□□□□ -0.38
SMG1-208ENST00000563448 FOXO4P98177 505 aa12.67□□□□□ -0.38
SMG1-208ENST00000563448 SYNE4Q8N205 404 aa12.67□□□□□ -0.38
SMG1-208ENST00000563448 FAM89AQ96GI7 184 aa12.67□□□□□ -0.38
SMG1-208ENST00000563448 SPEF2Q9C093 1822 aa12.67□□□□□ -0.38
SMG1-208ENST00000563448 SRGAP3O43295 1099 aa12.67□□□□□ -0.38
SMG1-208ENST00000563448 SF3B2Q13435 895 aaKnown RBP12.67□□□□□ -0.38
SMG1-208ENST00000563448 RABL6Q3YEC7 729 aaPredicted RBP12.67□□□□□ -0.38
SMG1-208ENST00000563448 PARP10Q53GL7 1025 aa12.67□□□□□ -0.38
SMG1-208ENST00000563448 TBC1D9BQ66K14 1250 aa12.67□□□□□ -0.38
SMG1-208ENST00000563448 BAG6P46379 1132 aa12.66□□□□□ -0.38
SMG1-208ENST00000563448 DEFB132Q7Z7B7 95 aa12.66□□□□□ -0.38
SMG1-208ENST00000563448 TRMT112Q9UI30 125 aaKnown RBP12.66□□□□□ -0.38
SMG1-208ENST00000563448 TAF1P21675 1872 aa12.66□□□□□ -0.38
SMG1-208ENST00000563448 PLA2G12BQ9BX93 195 aa12.66□□□□□ -0.38
SMG1-208ENST00000563448 FAM177BA6PVY3 158 aa12.65□□□□□ -0.38
SMG1-208ENST00000563448 NTSR2O95665 410 aa12.65□□□□□ -0.38
SMG1-208ENST00000563448 NUCB1Q02818 461 aa12.65□□□□□ -0.38
SMG1-208ENST00000563448 BICDL1Q6ZP65 573 aa12.65□□□□□ -0.38
SMG1-208ENST00000563448 UTP14AQ9BVJ6 771 aaKnown RBP12.65□□□□□ -0.38
SMG1-208ENST00000563448 TFCP2L1Q9NZI6 479 aa12.65□□□□□ -0.38
SMG1-208ENST00000563448 EXOC6BQ9Y2D4 811 aa12.65□□□□□ -0.38
SMG1-208ENST00000563448 LMBR1LQ6UX01 489 aa12.64□□□□□ -0.39
SMG1-208ENST00000563448 IRS4O14654 1257 aaPredicted RBP12.64□□□□□ -0.39
SMG1-208ENST00000563448 GYS1P13807 737 aa12.64□□□□□ -0.39
SMG1-208ENST00000563448 RFX5P48382 616 aaPredicted RBP12.64□□□□□ -0.39
SMG1-208ENST00000563448 ANKRD45Q5TZF3 282 aa12.64□□□□□ -0.39
SMG1-208ENST00000563448 COL23A1Q86Y22 540 aaPredicted RBP12.64□□□□□ -0.39
SMG1-208ENST00000563448 PNPLA7Q6ZV29 1317 aa12.63□□□□□ -0.39
SMG1-208ENST00000563448 SH3TC1Q8TE82 1336 aa12.63□□□□□ -0.39
SMG1-208ENST00000563448 CHD1LQ86WJ1 897 aa12.63□□□□□ -0.39
SMG1-208ENST00000563448 ANO8Q9HCE9 1232 aaPredicted RBP12.63□□□□□ -0.39
SMG1-208ENST00000563448 PA2G4Q9UQ80 394 aaKnown RBP12.63□□□□□ -0.39
SMG1-208ENST00000563448 NRXN2Q9P2S2 1712 aa12.63□□□□□ -0.39
SMG1-208ENST00000563448 PDE8AO60658 829 aa12.62□□□□□ -0.39
SMG1-208ENST00000563448 SURF6O75683 361 aaKnown RBP12.62□□□□□ -0.39
SMG1-208ENST00000563448 CSF1RP07333 972 aa12.62□□□□□ -0.39
SMG1-208ENST00000563448 PDE4AP27815 886 aa12.62□□□□□ -0.39
SMG1-208ENST00000563448 NUTM1Q86Y26 1132 aa12.62□□□□□ -0.39
SMG1-208ENST00000563448 CCDC125Q86Z20 511 aa12.62□□□□□ -0.39
SMG1-208ENST00000563448 SETDB2Q96T68 719 aa12.62□□□□□ -0.39
SMG1-208ENST00000563448 NOP58Q9Y2X3 529 aaKnown RBP12.62□□□□□ -0.39
SMG1-208ENST00000563448 TNRC6CQ9HCJ0 1690 aaKnown RBP12.62□□□□□ -0.39
SMG1-208ENST00000563448 APBB1O00213 710 aa12.62□□□□□ -0.39
SMG1-208ENST00000563448 RGS3P49796 1198 aa12.62□□□□□ -0.39
SMG1-208ENST00000563448 NFIXQ14938 502 aa12.62□□□□□ -0.39
SMG1-208ENST00000563448 SLC15A2Q16348 729 aa12.62□□□□□ -0.39
SMG1-208ENST00000563448 FLAD1Q8NFF5 587 aa12.62□□□□□ -0.39
SMG1-208ENST00000563448 KLHDC4Q8TBB5 520 aa12.62□□□□□ -0.39
SMG1-208ENST00000563448 LNPKQ9C0E8 428 aa12.62□□□□□ -0.39
SMG1-208ENST00000563448 SMARCA5O60264 1052 aaPredicted RBP12.61□□□□□ -0.39
SMG1-208ENST00000563448 ERFEQ4G0M1 354 aa12.61□□□□□ -0.39
SMG1-208ENST00000563448 CHMP3Q9Y3E7 222 aa12.61□□□□□ -0.39
SMG1-208ENST00000563448 A0A1B0GUL6 1792 aa12.61□□□□□ -0.39
SMG1-208ENST00000563448 ANKRD31Q8N7Z5 1873 aa12.61□□□□□ -0.39
SMG1-208ENST00000563448 HCLS1P14317 486 aaPredicted RBP12.61□□□□□ -0.39
SMG1-208ENST00000563448 CTSWP56202 376 aa12.61□□□□□ -0.39
SMG1-208ENST00000563448 PTPN12Q05209 780 aaKnown RBP12.61□□□□□ -0.39
SMG1-208ENST00000563448 TTLL11Q8NHH1 800 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms