RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 DDX19BQ9UMR2 479 aa20.94■□□□□ 0.94
VPS4A-202ENST00000562754 ZBTB7BO15156 539 aaPredicted RBP20.93■□□□□ 0.94
VPS4A-202ENST00000562754 NEFLP07196 543 aa20.93■□□□□ 0.94
VPS4A-202ENST00000562754 PARP10Q53GL7 1025 aa20.93■□□□□ 0.94
VPS4A-202ENST00000562754 SUSD4Q5VX71 490 aa20.93■□□□□ 0.94
VPS4A-202ENST00000562754 USP44Q9H0E7 712 aa20.93■□□□□ 0.94
VPS4A-202ENST00000562754 LAMB2P55268 1798 aa20.92■□□□□ 0.94
VPS4A-202ENST00000562754 PSDA5PKW4 1024 aaPredicted RBP20.92■□□□□ 0.94
VPS4A-202ENST00000562754 GRM8O00222 908 aa20.92■□□□□ 0.94
VPS4A-202ENST00000562754 SOCS7O14512 581 aa20.92■□□□□ 0.94
VPS4A-202ENST00000562754 TM4SF1P30408 202 aa20.92■□□□□ 0.94
VPS4A-202ENST00000562754 DDR1Q08345 913 aa20.92■□□□□ 0.94
VPS4A-202ENST00000562754 UTYO14607 1347 aa20.92■□□□□ 0.94
VPS4A-202ENST00000562754 CARMIL3Q8ND23 1372 aa20.92■□□□□ 0.94
VPS4A-202ENST00000562754 NRXN2Q9P2S2 1712 aa20.92■□□□□ 0.94
VPS4A-202ENST00000562754 NTSR2O95665 410 aa20.91■□□□□ 0.94
VPS4A-202ENST00000562754 CASP7P55210 303 aa20.91■□□□□ 0.94
VPS4A-202ENST00000562754 NLGN1Q8N2Q7 840 aa20.91■□□□□ 0.94
VPS4A-202ENST00000562754 JARID2Q92833 1246 aaPredicted RBP20.91■□□□□ 0.94
VPS4A-202ENST00000562754 SETDB2Q96T68 719 aa20.91■□□□□ 0.94
VPS4A-202ENST00000562754 DDX60Q8IY21 1712 aaKnown RBP20.9■□□□□ 0.94
VPS4A-202ENST00000562754 FAM177BA6PVY3 158 aa20.9■□□□□ 0.94
VPS4A-202ENST00000562754 H7C1W4 665 aa20.9■□□□□ 0.94
VPS4A-202ENST00000562754 NBPF7P0C2Y1 421 aaPredicted RBP20.9■□□□□ 0.94
VPS4A-202ENST00000562754 C9orf78Q9NZ63 289 aaPredicted RBP20.9■□□□□ 0.94
VPS4A-202ENST00000562754 PCCAP05165 728 aaPredicted RBP20.89■□□□□ 0.93
VPS4A-202ENST00000562754 UBE3BQ7Z3V4 1068 aa20.89■□□□□ 0.93
VPS4A-202ENST00000562754 SYNE4Q8N205 404 aa20.89■□□□□ 0.93
VPS4A-202ENST00000562754 SLC16A10Q8TF71 515 aa20.89■□□□□ 0.93
VPS4A-202ENST00000562754 UTP14AQ9BVJ6 771 aaKnown RBP20.89■□□□□ 0.93
VPS4A-202ENST00000562754 ZBTB40Q9NUA8 1239 aa20.89■□□□□ 0.93
VPS4A-202ENST00000562754 POLRMTO00411 1230 aaKnown RBP20.88■□□□□ 0.93
VPS4A-202ENST00000562754 RTL5Q5HYW3 569 aaPredicted RBP20.88■□□□□ 0.93
VPS4A-202ENST00000562754 ZBTB38Q8NAP3 1195 aaPredicted RBP20.88■□□□□ 0.93
VPS4A-202ENST00000562754 FAM89AQ96GI7 184 aa20.88■□□□□ 0.93
VPS4A-202ENST00000562754 TRMT112Q9UI30 125 aaKnown RBP20.88■□□□□ 0.93
VPS4A-202ENST00000562754 ABCC12Q96J65 1359 aa20.87■□□□□ 0.93
VPS4A-202ENST00000562754 TNRC6CQ9HCJ0 1690 aaKnown RBP20.87■□□□□ 0.93
VPS4A-202ENST00000562754 GNAI3P08754 354 aa20.87■□□□□ 0.93
VPS4A-202ENST00000562754 MMP10P09238 476 aa20.87■□□□□ 0.93
VPS4A-202ENST00000562754 UBTFL1P0CB47 393 aaPredicted RBP20.87■□□□□ 0.93
VPS4A-202ENST00000562754 PPP1R42Q7Z4L9 355 aa20.87■□□□□ 0.93
VPS4A-202ENST00000562754 C1orf115Q9H7X2 142 aa20.87■□□□□ 0.93
VPS4A-202ENST00000562754 MYH3P11055 1940 aa20.86■□□□□ 0.93
VPS4A-202ENST00000562754 CDHR2Q9BYE9 1310 aa20.86■□□□□ 0.93
VPS4A-202ENST00000562754 ZBTB7AO95365 584 aa20.86■□□□□ 0.93
VPS4A-202ENST00000562754 NBPF5PQ86XG9 351 aaPredicted RBP20.86■□□□□ 0.93
VPS4A-202ENST00000562754 NUTM1Q86Y26 1132 aa20.86■□□□□ 0.93
VPS4A-202ENST00000562754 SUCLG2Q96I99 432 aa20.86■□□□□ 0.93
VPS4A-202ENST00000562754 SH3TC1Q8TE82 1336 aa20.85■□□□□ 0.93
VPS4A-202ENST00000562754 SERPINB2P05120 415 aa20.85■□□□□ 0.93
VPS4A-202ENST00000562754 KAZALD1Q96I82 304 aa20.85■□□□□ 0.93
VPS4A-202ENST00000562754 LRRFIP2Q9Y608 721 aaKnown RBP20.85■□□□□ 0.93
VPS4A-202ENST00000562754 ANKRD31Q8N7Z5 1873 aa20.84■□□□□ 0.93
VPS4A-202ENST00000562754 ERFEQ4G0M1 354 aa20.84■□□□□ 0.93
VPS4A-202ENST00000562754 PRR5LQ6MZQ0 368 aa20.84■□□□□ 0.93
VPS4A-202ENST00000562754 NYXQ9GZU5 481 aa20.84■□□□□ 0.93
VPS4A-202ENST00000562754 CHMP4BQ9H444 224 aaKnown RBP20.84■□□□□ 0.93
VPS4A-202ENST00000562754 GNAI2P04899 355 aa20.83■□□□□ 0.93
VPS4A-202ENST00000562754 EPHA10Q5JZY3 1008 aa20.83■□□□□ 0.93
VPS4A-202ENST00000562754 CNBD1Q8NA66 436 aa20.83■□□□□ 0.93
VPS4A-202ENST00000562754 MTFR1LQ9H019 292 aa20.83■□□□□ 0.93
VPS4A-202ENST00000562754 RIC1Q4ADV7 1423 aa20.82■□□□□ 0.92
VPS4A-202ENST00000562754 IRS4O14654 1257 aaPredicted RBP20.82■□□□□ 0.92
VPS4A-202ENST00000562754 TPTE2Q6XPS3 522 aa20.82■□□□□ 0.92
VPS4A-202ENST00000562754 CCDC24Q8N4L8 307 aa20.82■□□□□ 0.92
VPS4A-202ENST00000562754 PARP3Q9Y6F1 533 aa20.82■□□□□ 0.92
VPS4A-202ENST00000562754 HCLS1P14317 486 aaPredicted RBP20.81■□□□□ 0.92
VPS4A-202ENST00000562754 ANKRD44Q8N8A2 993 aa20.81■□□□□ 0.92
VPS4A-202ENST00000562754 PLA2G12BQ9BX93 195 aa20.81■□□□□ 0.92
VPS4A-202ENST00000562754 BICC1Q9H694 974 aaKnown RBP20.81■□□□□ 0.92
VPS4A-202ENST00000562754 ATF5Q9Y2D1 282 aaPredicted RBP20.81■□□□□ 0.92
VPS4A-202ENST00000562754 FOXO4P98177 505 aa20.8■□□□□ 0.92
VPS4A-202ENST00000562754 AAMPQ13685 434 aa20.8■□□□□ 0.92
VPS4A-202ENST00000562754 PCDHB15Q9Y5E8 787 aa20.8■□□□□ 0.92
VPS4A-202ENST00000562754 GTF2E1P29083 439 aaPredicted RBP20.79■□□□□ 0.92
VPS4A-202ENST00000562754 SLC10A5Q5PT55 438 aa20.79■□□□□ 0.92
VPS4A-202ENST00000562754 C3orf67Q6ZVT6 689 aa20.79■□□□□ 0.92
VPS4A-202ENST00000562754 PDE8AO60658 829 aa20.78■□□□□ 0.92
VPS4A-202ENST00000562754 RABL6Q3YEC7 729 aaPredicted RBP20.78■□□□□ 0.92
VPS4A-202ENST00000562754 CEP85Q6P2H3 762 aa20.78■□□□□ 0.92
VPS4A-202ENST00000562754 SGIP1Q9BQI5 828 aa20.78■□□□□ 0.92
VPS4A-202ENST00000562754 COL11A2P13942 1736 aaPredicted RBP20.78■□□□□ 0.92
VPS4A-202ENST00000562754 C10orf71Q711Q0 1435 aa20.78■□□□□ 0.92
VPS4A-202ENST00000562754 KIF13BQ9NQT8 1826 aa20.77■□□□□ 0.92
VPS4A-202ENST00000562754 NPHP1O15259 732 aa20.77■□□□□ 0.92
VPS4A-202ENST00000562754 CTSWP56202 376 aa20.77■□□□□ 0.92
VPS4A-202ENST00000562754 ST5P78524 1137 aa20.77■□□□□ 0.92
VPS4A-202ENST00000562754 HDAC5Q9UQL6 1122 aa20.77■□□□□ 0.92
VPS4A-202ENST00000562754 MTX1Q13505 466 aa20.76■□□□□ 0.91
VPS4A-202ENST00000562754 ERICH6BQ5W0A0 696 aa20.76■□□□□ 0.91
VPS4A-202ENST00000562754 SIRT2Q8IXJ6 389 aa20.76■□□□□ 0.91
VPS4A-202ENST00000562754 COL4A1P02462 1669 aa20.75■□□□□ 0.91
VPS4A-202ENST00000562754 PTGER2P43116 358 aa20.75■□□□□ 0.91
VPS4A-202ENST00000562754 LMBR1LQ6UX01 489 aa20.75■□□□□ 0.91
VPS4A-202ENST00000562754 PNMA6EA0A0J9YXQ4 647 aa20.74■□□□□ 0.91
VPS4A-202ENST00000562754 CSF1RP07333 972 aa20.74■□□□□ 0.91
VPS4A-202ENST00000562754 HSP90B1P14625 803 aaKnown RBP20.74■□□□□ 0.91
VPS4A-202ENST00000562754 POLD1P28340 1107 aa20.74■□□□□ 0.91
VPS4A-202ENST00000562754 TTLL11Q8NHH1 800 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms