RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 NARFQ9UHQ1 456 aa17.38■□□□□ 0.37
CLK3-209ENST00000562670 TBC1D2BQ9UPU7 963 aa17.38■□□□□ 0.37
CLK3-209ENST00000562670 CDHR2Q9BYE9 1310 aa17.38■□□□□ 0.37
CLK3-209ENST00000562670 LAMB2P55268 1798 aa17.38■□□□□ 0.37
CLK3-209ENST00000562670 ZBTB38Q8NAP3 1195 aaPredicted RBP17.37■□□□□ 0.37
CLK3-209ENST00000562670 SUCLG2Q96I99 432 aa17.37■□□□□ 0.37
CLK3-209ENST00000562670 PLA2G12BQ9BX93 195 aa17.37■□□□□ 0.37
CLK3-209ENST00000562670 UBE3BQ7Z3V4 1068 aa17.36■□□□□ 0.37
CLK3-209ENST00000562670 UBN2Q6ZU65 1347 aa17.36■□□□□ 0.37
CLK3-209ENST00000562670 USP42Q9H9J4 1324 aaKnown RBP17.36■□□□□ 0.37
CLK3-209ENST00000562670 PNMA6EA0A0J9YXQ4 647 aa17.35■□□□□ 0.37
CLK3-209ENST00000562670 NUCB1Q02818 461 aa17.35■□□□□ 0.37
CLK3-209ENST00000562670 PPP1R42Q7Z4L9 355 aa17.35■□□□□ 0.37
CLK3-209ENST00000562670 BICC1Q9H694 974 aaKnown RBP17.35■□□□□ 0.37
CLK3-209ENST00000562670 QSER1Q2KHR3 1735 aa17.35■□□□□ 0.37
CLK3-209ENST00000562670 ARXQ96QS3 562 aa17.34■□□□□ 0.37
CLK3-209ENST00000562670 SRGAP3O43295 1099 aa17.33■□□□□ 0.36
CLK3-209ENST00000562670 TRAPPC3LQ5T215 181 aa17.33■□□□□ 0.36
CLK3-209ENST00000562670 ARHGEF1Q92888 912 aaKnown RBP17.33■□□□□ 0.36
CLK3-209ENST00000562670 AKT1S1Q96B36 256 aa17.33■□□□□ 0.36
CLK3-209ENST00000562670 TUBGCP6Q96RT7 1819 aa17.33■□□□□ 0.36
CLK3-209ENST00000562670 ZPR1O75312 459 aa17.32■□□□□ 0.36
CLK3-209ENST00000562670 HSP90B1P14625 803 aaKnown RBP17.32■□□□□ 0.36
CLK3-209ENST00000562670 AMIGO3Q86WK7 504 aa17.32■□□□□ 0.36
CLK3-209ENST00000562670 BCL2L12Q9HB09 334 aa17.32■□□□□ 0.36
CLK3-209ENST00000562670 PDZRN3Q9UPQ7 1066 aa17.32■□□□□ 0.36
CLK3-209ENST00000562670 NOP58Q9Y2X3 529 aaKnown RBP17.32■□□□□ 0.36
CLK3-209ENST00000562670 MYH3P11055 1940 aa17.31■□□□□ 0.36
CLK3-209ENST00000562670 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.31■□□□□ 0.36
CLK3-209ENST00000562670 GPTP24298 496 aa17.31■□□□□ 0.36
CLK3-209ENST00000562670 FOXO4P98177 505 aa17.31■□□□□ 0.36
CLK3-209ENST00000562670 HSP90AB4PQ58FF6 505 aa17.31■□□□□ 0.36
CLK3-209ENST00000562670 CCDC125Q86Z20 511 aa17.31■□□□□ 0.36
CLK3-209ENST00000562670 FLAD1Q8NFF5 587 aa17.31■□□□□ 0.36
CLK3-209ENST00000562670 CAMKK2Q96RR4 588 aa17.31■□□□□ 0.36
CLK3-209ENST00000562670 SH3TC1Q8TE82 1336 aa17.3■□□□□ 0.36
CLK3-209ENST00000562670 RAB11FIP3O75154 756 aa17.3■□□□□ 0.36
CLK3-209ENST00000562670 NTSR2O95665 410 aa17.3■□□□□ 0.36
CLK3-209ENST00000562670 RFC4P35249 363 aa17.3■□□□□ 0.36
CLK3-209ENST00000562670 EPHA10Q5JZY3 1008 aa17.3■□□□□ 0.36
CLK3-209ENST00000562670 USPL1Q5W0Q7 1092 aa17.3■□□□□ 0.36
CLK3-209ENST00000562670 CHD1LQ86WJ1 897 aa17.3■□□□□ 0.36
CLK3-209ENST00000562670 UTP14AQ9BVJ6 771 aaKnown RBP17.3■□□□□ 0.36
CLK3-209ENST00000562670 NIP7Q9Y221 180 aaKnown RBP eCLIP17.3■□□□□ 0.36
CLK3-209ENST00000562670 DDX60Q8IY21 1712 aaKnown RBP17.3■□□□□ 0.36
CLK3-209ENST00000562670 RIC1Q4ADV7 1423 aa17.3■□□□□ 0.36
CLK3-209ENST00000562670 LRP5O75197 1615 aa17.29■□□□□ 0.36
CLK3-209ENST00000562670 BAG6P46379 1132 aa17.29■□□□□ 0.36
CLK3-209ENST00000562670 TRMT112Q9UI30 125 aaKnown RBP17.29■□□□□ 0.36
CLK3-209ENST00000562670 RTL9Q8NET4 1388 aa17.28■□□□□ 0.36
CLK3-209ENST00000562670 CSF1RP07333 972 aa17.28■□□□□ 0.36
CLK3-209ENST00000562670 SF3B2Q13435 895 aaKnown RBP17.28■□□□□ 0.36
CLK3-209ENST00000562670 SUSD4Q5VX71 490 aa17.28■□□□□ 0.36
CLK3-209ENST00000562670 FAM89AQ96GI7 184 aa17.28■□□□□ 0.36
CLK3-209ENST00000562670 NYXQ9GZU5 481 aa17.28■□□□□ 0.36
CLK3-209ENST00000562670 COPRSQ9NQ92 184 aa17.28■□□□□ 0.36
CLK3-209ENST00000562670 CARMIL3Q8ND23 1372 aa17.28■□□□□ 0.36
CLK3-209ENST00000562670 PDE8AO60658 829 aa17.27■□□□□ 0.36
CLK3-209ENST00000562670 RFX5P48382 616 aaPredicted RBP17.27■□□□□ 0.36
CLK3-209ENST00000562670 ZNF827Q17R98 1081 aa17.27■□□□□ 0.36
CLK3-209ENST00000562670 ERC1Q8IUD2 1116 aa17.27■□□□□ 0.36
CLK3-209ENST00000562670 SRP68Q9UHB9 627 aaKnown RBP17.27■□□□□ 0.36
CLK3-209ENST00000562670 IRS4O14654 1257 aaPredicted RBP17.26■□□□□ 0.35
CLK3-209ENST00000562670 PHF14O94880 888 aa17.26■□□□□ 0.35
CLK3-209ENST00000562670 CTSWP56202 376 aa17.26■□□□□ 0.35
CLK3-209ENST00000562670 ANKRD45Q5TZF3 282 aa17.26■□□□□ 0.35
CLK3-209ENST00000562670 TBC1D9BQ66K14 1250 aa17.26■□□□□ 0.35
CLK3-209ENST00000562670 LMBR1LQ6UX01 489 aa17.26■□□□□ 0.35
CLK3-209ENST00000562670 LRRCC1Q9C099 1032 aa17.26■□□□□ 0.35
CLK3-209ENST00000562670 FBXO3Q9UK99 471 aa17.26■□□□□ 0.35
CLK3-209ENST00000562670 SURF6O75683 361 aaKnown RBP17.25■□□□□ 0.35
CLK3-209ENST00000562670 GYS1P13807 737 aa17.25■□□□□ 0.35
CLK3-209ENST00000562670 KIF1BPQ96EK5 621 aa17.25■□□□□ 0.35
CLK3-209ENST00000562670 SETDB2Q96T68 719 aa17.25■□□□□ 0.35
CLK3-209ENST00000562670 ZBTB47Q9UFB7 747 aaPredicted RBP17.25■□□□□ 0.35
CLK3-209ENST00000562670 EXOC6BQ9Y2D4 811 aa17.25■□□□□ 0.35
CLK3-209ENST00000562670 PDE4AP27815 886 aa17.24■□□□□ 0.35
CLK3-209ENST00000562670 PTPN12Q05209 780 aaKnown RBP17.24■□□□□ 0.35
CLK3-209ENST00000562670 EZH2Q15910 746 aaKnown RBP17.24■□□□□ 0.35
CLK3-209ENST00000562670 SLC10A5Q5PT55 438 aa17.24■□□□□ 0.35
CLK3-209ENST00000562670 JARID2Q92833 1246 aaPredicted RBP17.24■□□□□ 0.35
CLK3-209ENST00000562670 LNPKQ9C0E8 428 aa17.24■□□□□ 0.35
CLK3-209ENST00000562670 TFCP2L1Q9NZI6 479 aa17.24■□□□□ 0.35
CLK3-209ENST00000562670 EN1Q05925 392 aaPredicted RBP17.23■□□□□ 0.35
CLK3-209ENST00000562670 SMIM5Q71RC9 77 aa17.23■□□□□ 0.35
CLK3-209ENST00000562670 TTLL11Q8NHH1 800 aa17.23■□□□□ 0.35
CLK3-209ENST00000562670 PNPLA7Q6ZV29 1317 aa17.22■□□□□ 0.35
CLK3-209ENST00000562670 NRXN2Q9P2S2 1712 aa17.22■□□□□ 0.35
CLK3-209ENST00000562670 CIAO1O76071 339 aa17.22■□□□□ 0.35
CLK3-209ENST00000562670 RTL5Q5HYW3 569 aaPredicted RBP17.22■□□□□ 0.35
CLK3-209ENST00000562670 RHPN1Q8TCX5 695 aa17.22■□□□□ 0.35
CLK3-209ENST00000562670 SALL3Q9BXA9 1300 aa17.21■□□□□ 0.35
CLK3-209ENST00000562670 ABCC12Q96J65 1359 aa17.21■□□□□ 0.35
CLK3-209ENST00000562670 RGS3P49796 1198 aa17.21■□□□□ 0.35
CLK3-209ENST00000562670 NFIXQ14938 502 aa17.21■□□□□ 0.35
CLK3-209ENST00000562670 SLC15A2Q16348 729 aa17.21■□□□□ 0.35
CLK3-209ENST00000562670 CCDC57Q2TAC2 916 aa17.21■□□□□ 0.35
CLK3-209ENST00000562670 CASZ1Q86V15 1759 aa17.2■□□□□ 0.34
CLK3-209ENST00000562670 TM4SF1P30408 202 aa17.2■□□□□ 0.34
CLK3-209ENST00000562670 G3BP1Q13283 466 aaKnown RBP eCLIP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms