RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 JARID2Q92833 1246 aaPredicted RBP16.96■□□□□ 0.31
VPS39-206ENST00000562662 CASZ1Q86V15 1759 aa16.96■□□□□ 0.31
VPS39-206ENST00000562662 QSER1Q2KHR3 1735 aa16.96■□□□□ 0.3
VPS39-206ENST00000562662 POLA2Q14181 598 aa16.95■□□□□ 0.3
VPS39-206ENST00000562662 CLEC4GQ6UXB4 293 aa16.95■□□□□ 0.3
VPS39-206ENST00000562662 ARHGEF1Q92888 912 aaKnown RBP16.95■□□□□ 0.3
VPS39-206ENST00000562662 DCTPP1Q9H773 170 aa16.95■□□□□ 0.3
VPS39-206ENST00000562662 BCL2L12Q9HB09 334 aa16.95■□□□□ 0.3
VPS39-206ENST00000562662 DDX60Q8IY21 1712 aaKnown RBP16.95■□□□□ 0.3
VPS39-206ENST00000562662 HMMRO75330 724 aa16.94■□□□□ 0.3
VPS39-206ENST00000562662 PCCAP05165 728 aaPredicted RBP16.94■□□□□ 0.3
VPS39-206ENST00000562662 ADRA2BP18089 450 aa16.94■□□□□ 0.3
VPS39-206ENST00000562662 EPHA10Q5JZY3 1008 aa16.94■□□□□ 0.3
VPS39-206ENST00000562662 PPP1R42Q7Z4L9 355 aa16.94■□□□□ 0.3
VPS39-206ENST00000562662 SSH3Q8TE77 659 aa16.94■□□□□ 0.3
VPS39-206ENST00000562662 GCC1Q96CN9 775 aa16.94■□□□□ 0.3
VPS39-206ENST00000562662 BICC1Q9H694 974 aaKnown RBP16.94■□□□□ 0.3
VPS39-206ENST00000562662 SRP68Q9UHB9 627 aaKnown RBP16.94■□□□□ 0.3
VPS39-206ENST00000562662 ZNF652Q9Y2D9 606 aa16.94■□□□□ 0.3
VPS39-206ENST00000562662 USP42Q9H9J4 1324 aaKnown RBP16.94■□□□□ 0.3
VPS39-206ENST00000562662 SSFA2P28290 1259 aa16.93■□□□□ 0.3
VPS39-206ENST00000562662 ZNF827Q17R98 1081 aa16.93■□□□□ 0.3
VPS39-206ENST00000562662 TRAPPC3LQ5T215 181 aa16.93■□□□□ 0.3
VPS39-206ENST00000562662 USPL1Q5W0Q7 1092 aa16.93■□□□□ 0.3
VPS39-206ENST00000562662 AKT1S1Q96B36 256 aa16.93■□□□□ 0.3
VPS39-206ENST00000562662 CAMKK2Q96RR4 588 aa16.93■□□□□ 0.3
VPS39-206ENST00000562662 PDZRN3Q9UPQ7 1066 aa16.93■□□□□ 0.3
VPS39-206ENST00000562662 CDHR2Q9BYE9 1310 aa16.93■□□□□ 0.3
VPS39-206ENST00000562662 PHF14O94880 888 aa16.92■□□□□ 0.3
VPS39-206ENST00000562662 RABL6Q3YEC7 729 aaPredicted RBP16.92■□□□□ 0.3
VPS39-206ENST00000562662 SKAP1Q86WV1 359 aa16.92■□□□□ 0.3
VPS39-206ENST00000562662 ZBTB38Q8NAP3 1195 aaPredicted RBP16.92■□□□□ 0.3
VPS39-206ENST00000562662 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.91■□□□□ 0.3
VPS39-206ENST00000562662 SRGAP3O43295 1099 aa16.91■□□□□ 0.3
VPS39-206ENST00000562662 ZPR1O75312 459 aa16.91■□□□□ 0.3
VPS39-206ENST00000562662 FOXO4P98177 505 aa16.91■□□□□ 0.3
VPS39-206ENST00000562662 EN1Q05925 392 aaPredicted RBP16.91■□□□□ 0.3
VPS39-206ENST00000562662 EZH2Q15910 746 aaKnown RBP16.91■□□□□ 0.3
VPS39-206ENST00000562662 PARP10Q53GL7 1025 aa16.91■□□□□ 0.3
VPS39-206ENST00000562662 NIP7Q9Y221 180 aaKnown RBP eCLIP16.91■□□□□ 0.3
VPS39-206ENST00000562662 RFC4P35249 363 aa16.9■□□□□ 0.3
VPS39-206ENST00000562662 RTL5Q5HYW3 569 aaPredicted RBP16.9■□□□□ 0.3
VPS39-206ENST00000562662 SUSD4Q5VX71 490 aa16.9■□□□□ 0.3
VPS39-206ENST00000562662 FAM89AQ96GI7 184 aa16.9■□□□□ 0.3
VPS39-206ENST00000562662 PLA2G12BQ9BX93 195 aa16.9■□□□□ 0.3
VPS39-206ENST00000562662 NTSR2O95665 410 aa16.89■□□□□ 0.29
VPS39-206ENST00000562662 NUCB1Q02818 461 aa16.89■□□□□ 0.29
VPS39-206ENST00000562662 TBC1D9BQ66K14 1250 aa16.89■□□□□ 0.29
VPS39-206ENST00000562662 TRMT112Q9UI30 125 aaKnown RBP16.89■□□□□ 0.29
VPS39-206ENST00000562662 BAG6P46379 1132 aa16.88■□□□□ 0.29
VPS39-206ENST00000562662 SF3B2Q13435 895 aaKnown RBP16.88■□□□□ 0.29
VPS39-206ENST00000562662 SYNE4Q8N205 404 aa16.88■□□□□ 0.29
VPS39-206ENST00000562662 UTP14AQ9BVJ6 771 aaKnown RBP16.88■□□□□ 0.29
VPS39-206ENST00000562662 RFX5P48382 616 aaPredicted RBP16.87■□□□□ 0.29
VPS39-206ENST00000562662 EXOC6BQ9Y2D4 811 aa16.87■□□□□ 0.29
VPS39-206ENST00000562662 IRS4O14654 1257 aaPredicted RBP16.86■□□□□ 0.29
VPS39-206ENST00000562662 GYS1P13807 737 aa16.86■□□□□ 0.29
VPS39-206ENST00000562662 PDE4AP27815 886 aa16.86■□□□□ 0.29
VPS39-206ENST00000562662 ANKRD45Q5TZF3 282 aa16.86■□□□□ 0.29
VPS39-206ENST00000562662 LMBR1LQ6UX01 489 aa16.86■□□□□ 0.29
VPS39-206ENST00000562662 DEFB132Q7Z7B7 95 aa16.86■□□□□ 0.29
VPS39-206ENST00000562662 CHD1LQ86WJ1 897 aa16.86■□□□□ 0.29
VPS39-206ENST00000562662 TFCP2L1Q9NZI6 479 aa16.86■□□□□ 0.29
VPS39-206ENST00000562662 NOP58Q9Y2X3 529 aaKnown RBP16.86■□□□□ 0.29
VPS39-206ENST00000562662 SH3TC1Q8TE82 1336 aa16.86■□□□□ 0.29
VPS39-206ENST00000562662 FAM177BA6PVY3 158 aa16.85■□□□□ 0.29
VPS39-206ENST00000562662 CSF1RP07333 972 aa16.85■□□□□ 0.29
VPS39-206ENST00000562662 ANO8Q9HCE9 1232 aaPredicted RBP16.85■□□□□ 0.29
VPS39-206ENST00000562662 PA2G4Q9UQ80 394 aaKnown RBP16.85■□□□□ 0.29
VPS39-206ENST00000562662 PDE8AO60658 829 aa16.84■□□□□ 0.29
VPS39-206ENST00000562662 SURF6O75683 361 aaKnown RBP16.84■□□□□ 0.29
VPS39-206ENST00000562662 BICDL1Q6ZP65 573 aa16.84■□□□□ 0.29
VPS39-206ENST00000562662 COL23A1Q86Y22 540 aaPredicted RBP16.84■□□□□ 0.29
VPS39-206ENST00000562662 CCDC125Q86Z20 511 aa16.84■□□□□ 0.29
VPS39-206ENST00000562662 FLAD1Q8NFF5 587 aa16.84■□□□□ 0.29
VPS39-206ENST00000562662 SETDB2Q96T68 719 aa16.84■□□□□ 0.29
VPS39-206ENST00000562662 LNPKQ9C0E8 428 aa16.84■□□□□ 0.29
VPS39-206ENST00000562662 PNPLA7Q6ZV29 1317 aa16.84■□□□□ 0.29
VPS39-206ENST00000562662 RAB11FIP3O75154 756 aa16.83■□□□□ 0.28
VPS39-206ENST00000562662 RGS3P49796 1198 aa16.83■□□□□ 0.28
VPS39-206ENST00000562662 PTPN12Q05209 780 aaKnown RBP16.83■□□□□ 0.28
VPS39-206ENST00000562662 NFIXQ14938 502 aa16.83■□□□□ 0.28
VPS39-206ENST00000562662 CARMIL3Q8ND23 1372 aa16.83■□□□□ 0.28
VPS39-206ENST00000562662 SPEF2Q9C093 1822 aa16.83■□□□□ 0.28
VPS39-206ENST00000562662 COPRSQ9NQ92 184 aa16.83■□□□□ 0.28
VPS39-206ENST00000562662 NRXN2Q9P2S2 1712 aa16.83■□□□□ 0.28
VPS39-206ENST00000562662 TNRC6CQ9HCJ0 1690 aaKnown RBP16.82■□□□□ 0.28
VPS39-206ENST00000562662 APBB1O00213 710 aa16.82■□□□□ 0.28
VPS39-206ENST00000562662 SMARCA5O60264 1052 aaPredicted RBP16.82■□□□□ 0.28
VPS39-206ENST00000562662 CTSWP56202 376 aa16.82■□□□□ 0.28
VPS39-206ENST00000562662 SLC15A2Q16348 729 aa16.82■□□□□ 0.28
VPS39-206ENST00000562662 NUTM1Q86Y26 1132 aa16.82■□□□□ 0.28
VPS39-206ENST00000562662 TTLL11Q8NHH1 800 aa16.82■□□□□ 0.28
VPS39-206ENST00000562662 LRP5O75197 1615 aa16.81■□□□□ 0.28
VPS39-206ENST00000562662 ABCC12Q96J65 1359 aa16.81■□□□□ 0.28
VPS39-206ENST00000562662 HCLS1P14317 486 aaPredicted RBP16.81■□□□□ 0.28
VPS39-206ENST00000562662 FAM161AQ3B820 660 aa16.81■□□□□ 0.28
VPS39-206ENST00000562662 ERFEQ4G0M1 354 aa16.81■□□□□ 0.28
VPS39-206ENST00000562662 HSP90AB4PQ58FF6 505 aa16.81■□□□□ 0.28
VPS39-206ENST00000562662 PELP1Q8IZL8 1130 aaKnown RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms