RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CCDC82Q8N4S0 544 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 PLEKHF1Q96S99 279 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 SOS2Q07890 1332 aaPredicted RBP11.06□□□□□ -0.64
VPS39-205ENST00000562258 CROCC2H7BZ55 1655 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 NAPBQ9H115 298 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 MKNK2Q9HBH9 465 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 VEZTQ9HBM0 779 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 THRAP3Q9Y2W1 955 aaKnown RBP11.06□□□□□ -0.64
VPS39-205ENST00000562258 SPATA31A6Q5VVP1 1343 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 KDM5AP29375 1690 aaKnown RBP11.06□□□□□ -0.64
VPS39-205ENST00000562258 HAND2P61296 217 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 CCDC191Q8NCU4 936 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 UPF3BQ9BZI7 483 aaKnown RBP11.06□□□□□ -0.64
VPS39-205ENST00000562258 TSHZ2Q9NRE2 1034 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 ZMYM4Q5VZL5 1548 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 GCKRQ14397 625 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 WDR78Q5VTH9 848 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 NLGN1Q8N2Q7 840 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 TCEAL9Q9UHQ7 104 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 PALLDQ8WX93 1383 aa11.05□□□□□ -0.64
VPS39-205ENST00000562258 TXNRD1Q16881 649 aa11.05□□□□□ -0.64
VPS39-205ENST00000562258 LARGE2Q8N3Y3 721 aa11.05□□□□□ -0.64
VPS39-205ENST00000562258 RANBP6O60518 1105 aaKnown RBP11.05□□□□□ -0.64
VPS39-205ENST00000562258 IL15P40933 162 aaPredicted RBP11.05□□□□□ -0.64
VPS39-205ENST00000562258 TFCP2Q12800 502 aa11.05□□□□□ -0.64
VPS39-205ENST00000562258 MARCH10Q8NA82 808 aaPredicted RBP11.05□□□□□ -0.64
VPS39-205ENST00000562258 MMP10P09238 476 aa11.05□□□□□ -0.64
VPS39-205ENST00000562258 ATP8B2P98198 1209 aa11.05□□□□□ -0.64
VPS39-205ENST00000562258 ATG3Q9NT62 314 aa11.05□□□□□ -0.64
VPS39-205ENST00000562258 PICALMQ13492 652 aa11.04□□□□□ -0.64
VPS39-205ENST00000562258 HOXB7P09629 217 aa11.04□□□□□ -0.64
VPS39-205ENST00000562258 ARHGAP27Q6ZUM4 889 aa11.04□□□□□ -0.64
VPS39-205ENST00000562258 SUCLG2Q96I99 432 aa11.04□□□□□ -0.64
VPS39-205ENST00000562258 NEXMIFQ5QGS0 1516 aa11.04□□□□□ -0.64
VPS39-205ENST00000562258 PDE8AO60658 829 aa11.04□□□□□ -0.64
VPS39-205ENST00000562258 VPS72Q15906 364 aa11.04□□□□□ -0.64
VPS39-205ENST00000562258 DPP8Q6V1X1 898 aaPredicted RBP11.04□□□□□ -0.64
VPS39-205ENST00000562258 ANKRD44Q8N8A2 993 aa11.04□□□□□ -0.64
VPS39-205ENST00000562258 UBAC1Q9BSL1 405 aa11.04□□□□□ -0.64
VPS39-205ENST00000562258 SMC3Q9UQE7 1217 aa11.04□□□□□ -0.64
VPS39-205ENST00000562258 NDUFB9Q9Y6M9 179 aa11.04□□□□□ -0.64
VPS39-205ENST00000562258 PPFIA3O75145 1194 aa11.03□□□□□ -0.64
VPS39-205ENST00000562258 R3HDM1Q15032 1099 aaKnown RBP11.03□□□□□ -0.64
VPS39-205ENST00000562258 LARP6Q9BRS8 491 aaKnown RBP11.03□□□□□ -0.64
VPS39-205ENST00000562258 CYP7A1P22680 504 aa11.03□□□□□ -0.64
VPS39-205ENST00000562258 RPS8P62241 208 aaKnown RBP11.03□□□□□ -0.64
VPS39-205ENST00000562258 ZNF526Q8TF50 670 aaPredicted RBP11.03□□□□□ -0.64
VPS39-205ENST00000562258 RBM17Q96I25 401 aaKnown RBP11.03□□□□□ -0.64
VPS39-205ENST00000562258 BABAM1Q9NWV8 329 aa11.03□□□□□ -0.64
VPS39-205ENST00000562258 PTCH1Q13635 1447 aa11.03□□□□□ -0.64
VPS39-205ENST00000562258 MIGA1Q8NAN2 632 aa11.03□□□□□ -0.64
VPS39-205ENST00000562258 ZNF408Q9H9D4 720 aa11.03□□□□□ -0.64
VPS39-205ENST00000562258 FER1L4A9Z1Z3 1794 aa11.03□□□□□ -0.64
VPS39-205ENST00000562258 SERPINB2P05120 415 aa11.02□□□□□ -0.64
VPS39-205ENST00000562258 PTMAP06454 111 aaKnown RBP11.02□□□□□ -0.64
VPS39-205ENST00000562258 PSMA5P28066 241 aa11.02□□□□□ -0.64
VPS39-205ENST00000562258 SLC9C2Q5TAH2 1124 aa11.02□□□□□ -0.64
VPS39-205ENST00000562258 C2CD5Q86YS7 1000 aa11.02□□□□□ -0.64
VPS39-205ENST00000562258 FLAD1Q8NFF5 587 aa11.02□□□□□ -0.64
VPS39-205ENST00000562258 JAKMIP1Q96N16 626 aaKnown RBP11.02□□□□□ -0.64
VPS39-205ENST00000562258 PRPF40BQ6NWY9 871 aaKnown RBP11.02□□□□□ -0.65
VPS39-205ENST00000562258 CEP85Q6P2H3 762 aa11.02□□□□□ -0.65
VPS39-205ENST00000562258 TULP4Q9NRJ4 1543 aa11.02□□□□□ -0.65
VPS39-205ENST00000562258 RTL1A6NKG5 1358 aa11.02□□□□□ -0.65
VPS39-205ENST00000562258 PNMA6EA0A0J9YXQ4 647 aa11.02□□□□□ -0.65
VPS39-205ENST00000562258 NEURL1BA8MQ27 555 aa11.02□□□□□ -0.65
VPS39-205ENST00000562258 IL6STP40189 918 aaPredicted RBP11.02□□□□□ -0.65
VPS39-205ENST00000562258 LDHCP07864 332 aa11.01□□□□□ -0.65
VPS39-205ENST00000562258 ANP32EQ9BTT0 268 aa11.01□□□□□ -0.65
VPS39-205ENST00000562258 BLOC1S2Q6QNY1 142 aa11.01□□□□□ -0.65
VPS39-205ENST00000562258 GBP4Q96PP9 640 aa11.01□□□□□ -0.65
VPS39-205ENST00000562258 SPATA31A1Q5TZJ5 1347 aa11.01□□□□□ -0.65
VPS39-205ENST00000562258 MYO1BO43795 1136 aa11.01□□□□□ -0.65
VPS39-205ENST00000562258 PRKG1Q13976 671 aa11.01□□□□□ -0.65
VPS39-205ENST00000562258 PREX1Q8TCU6 1659 aa11□□□□□ -0.65
VPS39-205ENST00000562258 A0A1B0GUL7 405 aa11□□□□□ -0.65
VPS39-205ENST00000562258 EYA2O00167 538 aa11□□□□□ -0.65
VPS39-205ENST00000562258 BAG3O95817 575 aa11□□□□□ -0.65
VPS39-205ENST00000562258 IMMTQ16891 758 aaKnown RBP11□□□□□ -0.65
VPS39-205ENST00000562258 NAA16Q6N069 864 aaPredicted RBP11□□□□□ -0.65
VPS39-205ENST00000562258 GIGYF2Q6Y7W6 1299 aaKnown RBP11□□□□□ -0.65
VPS39-205ENST00000562258 ZNF804AQ7Z570 1209 aa11□□□□□ -0.65
VPS39-205ENST00000562258 ZNF444Q8N0Y2 327 aaPredicted RBP11□□□□□ -0.65
VPS39-205ENST00000562258 FEZ1Q99689 392 aa11□□□□□ -0.65
VPS39-205ENST00000562258 ZBTB7BO15156 539 aaPredicted RBP11□□□□□ -0.65
VPS39-205ENST00000562258 DBNDD2Q9BQY9 259 aa11□□□□□ -0.65
VPS39-205ENST00000562258 USP44Q9H0E7 712 aa11□□□□□ -0.65
VPS39-205ENST00000562258 CTNNA3Q9UI47 895 aa11□□□□□ -0.65
VPS39-205ENST00000562258 GGA1Q9UJY5 639 aa11□□□□□ -0.65
VPS39-205ENST00000562258 CYP46A1Q9Y6A2 500 aa11□□□□□ -0.65
VPS39-205ENST00000562258 PPIP5K2O43314 1243 aa11□□□□□ -0.65
VPS39-205ENST00000562258 SAFBQ15424 915 aaKnown RBP eCLIP11□□□□□ -0.65
VPS39-205ENST00000562258 RAB11FIP4Q86YS3 637 aa11□□□□□ -0.65
VPS39-205ENST00000562258 SYNE4Q8N205 404 aa11□□□□□ -0.65
VPS39-205ENST00000562258 IPO9Q96P70 1041 aaKnown RBP11□□□□□ -0.65
VPS39-205ENST00000562258 ZBTB40Q9NUA8 1239 aa11□□□□□ -0.65
VPS39-205ENST00000562258 MAP3K15Q6ZN16 1313 aa11□□□□□ -0.65
VPS39-205ENST00000562258 SPATA31D1Q6ZQQ2 1576 aa11□□□□□ -0.65
VPS39-205ENST00000562258 CPSF1Q10570 1443 aaKnown RBP11□□□□□ -0.65
VPS39-205ENST00000562258 HLFQ16534 295 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms