RNA–Protein interactions for RNA: ENST00000560424.1

SMAD3-215, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-215ENST00000560424 KNSTRNQ9Y448 316 aa12.48□□□□□ -0.41
SMAD3-215ENST00000560424 GRIPAP1Q4V328 841 aa12.47□□□□□ -0.41
SMAD3-215ENST00000560424 HHIPL1Q96JK4 782 aa12.47□□□□□ -0.41
SMAD3-215ENST00000560424 ADARB2Q9NS39 739 aaKnown RBP12.47□□□□□ -0.41
SMAD3-215ENST00000560424 KLRG2A4D1S0 409 aaPredicted RBP12.46□□□□□ -0.41
SMAD3-215ENST00000560424 GNAT3A8MTJ3 354 aa12.46□□□□□ -0.41
SMAD3-215ENST00000560424 PIP4K2AP48426 406 aaPredicted RBP12.46□□□□□ -0.41
SMAD3-215ENST00000560424 EIF4G2P78344 907 aaKnown RBP eCLIP12.46□□□□□ -0.41
SMAD3-215ENST00000560424 NOGQ13253 232 aa12.46□□□□□ -0.41
SMAD3-215ENST00000560424 GAS2L2Q8NHY3 880 aa12.46□□□□□ -0.41
SMAD3-215ENST00000560424 RPGRQ92834 1020 aaKnown RBP12.46□□□□□ -0.41
SMAD3-215ENST00000560424 BTBD11A6QL63 1104 aa12.45□□□□□ -0.42
SMAD3-215ENST00000560424 DIAPH1O60610 1272 aaKnown RBP12.45□□□□□ -0.42
SMAD3-215ENST00000560424 PPIP5K2O43314 1243 aa12.44□□□□□ -0.42
SMAD3-215ENST00000560424 GLIS2Q9BZE0 524 aaPredicted RBP12.44□□□□□ -0.42
SMAD3-215ENST00000560424 NYXQ9GZU5 481 aa12.44□□□□□ -0.42
SMAD3-215ENST00000560424 TCERG1O14776 1098 aaKnown RBP12.43□□□□□ -0.42
SMAD3-215ENST00000560424 BCL2L13Q9BXK5 485 aa12.43□□□□□ -0.42
SMAD3-215ENST00000560424 GPRC5DQ9NZD1 345 aa12.43□□□□□ -0.42
SMAD3-215ENST00000560424 U2SURPO15042 1029 aaKnown RBP12.42□□□□□ -0.42
SMAD3-215ENST00000560424 HUNKP57058 714 aa12.42□□□□□ -0.42
SMAD3-215ENST00000560424 CDC37L1Q7L3B6 337 aa12.42□□□□□ -0.42
SMAD3-215ENST00000560424 IL17REQ8NFR9 667 aa12.42□□□□□ -0.42
SMAD3-215ENST00000560424 RBM17Q96I25 401 aaKnown RBP12.42□□□□□ -0.42
SMAD3-215ENST00000560424 USP16Q9Y5T5 823 aa12.42□□□□□ -0.42
SMAD3-215ENST00000560424 PPEF1O14829 653 aaPredicted RBP12.41□□□□□ -0.42
SMAD3-215ENST00000560424 RGL2O15211 777 aa12.41□□□□□ -0.42
SMAD3-215ENST00000560424 SNRPA1P09661 255 aaKnown RBP12.41□□□□□ -0.42
SMAD3-215ENST00000560424 HSPA5P11021 654 aaKnown RBP12.41□□□□□ -0.42
SMAD3-215ENST00000560424 NBPF15Q8N660 670 aa12.41□□□□□ -0.42
SMAD3-215ENST00000560424 GCC1Q96CN9 775 aa12.41□□□□□ -0.42
SMAD3-215ENST00000560424 SAGE1Q9NXZ1 904 aa12.41□□□□□ -0.42
SMAD3-215ENST00000560424 COL4A5P29400 1685 aa12.41□□□□□ -0.42
SMAD3-215ENST00000560424 AOC3Q16853 763 aa12.4□□□□□ -0.42
SMAD3-215ENST00000560424 CRY2Q49AN0 593 aa12.4□□□□□ -0.42
SMAD3-215ENST00000560424 NUTM1Q86Y26 1132 aa12.4□□□□□ -0.42
SMAD3-215ENST00000560424 SUPT20HQ8NEM7 779 aa12.4□□□□□ -0.42
SMAD3-215ENST00000560424 ZC3H15Q8WU90 426 aaKnown RBP12.4□□□□□ -0.42
SMAD3-215ENST00000560424 TNRC18O15417 2968 aaPredicted RBP12.4□□□□□ -0.42
SMAD3-215ENST00000560424 SIPA1L3O60292 1781 aaPredicted RBP12.4□□□□□ -0.42
SMAD3-215ENST00000560424 NPC1L1Q9UHC9 1359 aa12.4□□□□□ -0.42
SMAD3-215ENST00000560424 SNED1Q8TER0 1413 aa12.39□□□□□ -0.43
SMAD3-215ENST00000560424 KCNQ3O43525 872 aa12.39□□□□□ -0.43
SMAD3-215ENST00000560424 GMPSP49915 693 aaPredicted RBP12.39□□□□□ -0.43
SMAD3-215ENST00000560424 DIEXFQ68CQ4 756 aaKnown RBP12.39□□□□□ -0.43
SMAD3-215ENST00000560424 RGMBQ6NW40 437 aa12.39□□□□□ -0.43
SMAD3-215ENST00000560424 VPS33BQ9H267 617 aa12.39□□□□□ -0.43
SMAD3-215ENST00000560424 ZNRF3Q9ULT6 936 aa12.39□□□□□ -0.43
SMAD3-215ENST00000560424 CDHR2Q9BYE9 1310 aa12.38□□□□□ -0.43
SMAD3-215ENST00000560424 H7C1D1 291 aa12.38□□□□□ -0.43
SMAD3-215ENST00000560424 TRPA1O75762 1119 aa12.38□□□□□ -0.43
SMAD3-215ENST00000560424 TNIP1Q15025 636 aa12.38□□□□□ -0.43
SMAD3-215ENST00000560424 CTU1Q7Z7A3 348 aaKnown RBP12.38□□□□□ -0.43
SMAD3-215ENST00000560424 RTF1Q92541 710 aaKnown RBP12.38□□□□□ -0.43
SMAD3-215ENST00000560424 CCDC102AQ96A19 550 aa12.38□□□□□ -0.43
SMAD3-215ENST00000560424 ABCC12Q96J65 1359 aa12.38□□□□□ -0.43
SMAD3-215ENST00000560424 PRAMEF22A3QJZ6 481 aa12.37□□□□□ -0.43
SMAD3-215ENST00000560424 ZNF157P51786 506 aaPredicted RBP12.37□□□□□ -0.43
SMAD3-215ENST00000560424 CXCL9Q07325 125 aa12.37□□□□□ -0.43
SMAD3-215ENST00000560424 HLFQ16534 295 aa12.37□□□□□ -0.43
SMAD3-215ENST00000560424 KIF6Q6ZMV9 814 aa12.37□□□□□ -0.43
SMAD3-215ENST00000560424 USP48Q86UV5 1035 aa12.37□□□□□ -0.43
SMAD3-215ENST00000560424 NGEFQ8N5V2 710 aa12.37□□□□□ -0.43
SMAD3-215ENST00000560424 C2orf69Q8N8R5 385 aa12.37□□□□□ -0.43
SMAD3-215ENST00000560424 CRAMP1Q96RY5 1269 aa12.37□□□□□ -0.43
SMAD3-215ENST00000560424 ZIC5Q96T25 663 aa12.37□□□□□ -0.43
SMAD3-215ENST00000560424 PGAP2Q9UHJ9 254 aa12.37□□□□□ -0.43
SMAD3-215ENST00000560424 KIF7Q2M1P5 1343 aa12.37□□□□□ -0.43
SMAD3-215ENST00000560424 CEMIPQ8WUJ3 1361 aa12.36□□□□□ -0.43
SMAD3-215ENST00000560424 HOXA10P31260 410 aaPredicted RBP12.36□□□□□ -0.43
SMAD3-215ENST00000560424 KIF23Q02241 960 aaPredicted RBP12.36□□□□□ -0.43
SMAD3-215ENST00000560424 GBA2Q9HCG7 927 aaPredicted RBP12.36□□□□□ -0.43
SMAD3-215ENST00000560424 HDAC9Q9UKV0 1011 aa12.36□□□□□ -0.43
SMAD3-215ENST00000560424 AKAP11Q9UKA4 1901 aa12.35□□□□□ -0.43
SMAD3-215ENST00000560424 DPP8Q6V1X1 898 aaPredicted RBP12.35□□□□□ -0.43
SMAD3-215ENST00000560424 TRPM4Q8TD43 1214 aa12.35□□□□□ -0.43
SMAD3-215ENST00000560424 RNF186Q9NXI6 227 aa12.35□□□□□ -0.43
SMAD3-215ENST00000560424 CNOT7Q9UIV1 285 aaKnown RBP12.35□□□□□ -0.43
SMAD3-215ENST00000560424 RIC1Q4ADV7 1423 aa12.35□□□□□ -0.43
SMAD3-215ENST00000560424 NBPF26B4DH59 902 aa12.34□□□□□ -0.43
SMAD3-215ENST00000560424 RAD17O75943 681 aa12.34□□□□□ -0.43
SMAD3-215ENST00000560424 GPTP24298 496 aa12.34□□□□□ -0.43
SMAD3-215ENST00000560424 PKN2Q16513 984 aaKnown RBP12.34□□□□□ -0.43
SMAD3-215ENST00000560424 NBPF10Q6P3W6 841 aaKnown RBP12.34□□□□□ -0.43
SMAD3-215ENST00000560424 KRT26Q7Z3Y9 468 aa12.34□□□□□ -0.43
SMAD3-215ENST00000560424 NLRP3Q96P20 1036 aa12.34□□□□□ -0.43
SMAD3-215ENST00000560424 HPS5Q9UPZ3 1129 aa12.34□□□□□ -0.43
SMAD3-215ENST00000560424 ATP6V0A2Q9Y487 856 aa12.34□□□□□ -0.43
SMAD3-215ENST00000560424 FAM155AB1AL88 458 aaPredicted RBP12.33□□□□□ -0.44
SMAD3-215ENST00000560424 ERVV-1B6SEH8 477 aa12.33□□□□□ -0.44
SMAD3-215ENST00000560424 HIRAP54198 1017 aaPredicted RBP12.33□□□□□ -0.44
SMAD3-215ENST00000560424 AMER1Q5JTC6 1135 aaPredicted RBP12.33□□□□□ -0.44
SMAD3-215ENST00000560424 CC2D1BQ5T0F9 858 aaKnown RBP12.33□□□□□ -0.44
SMAD3-215ENST00000560424 PPP1R42Q7Z4L9 355 aa12.33□□□□□ -0.44
SMAD3-215ENST00000560424 MICALL2Q8IY33 904 aa12.33□□□□□ -0.44
SMAD3-215ENST00000560424 REM2Q8IYK8 340 aaPredicted RBP12.33□□□□□ -0.44
SMAD3-215ENST00000560424 DCPSQ96C86 337 aaKnown RBP12.33□□□□□ -0.44
SMAD3-215ENST00000560424 IBTKQ9P2D0 1353 aaPredicted RBP12.32□□□□□ -0.44
SMAD3-215ENST00000560424 KIAA2012Q0VF49 1180 aa12.32□□□□□ -0.44
SMAD3-215ENST00000560424 MPNDQ8N594 471 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms