RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 NLRP2Q9NX02 1062 aa6.92□□□□□ -1.3
SPG11-220ENST00000559933 USP35Q9P2H5 1018 aa6.92□□□□□ -1.3
SPG11-220ENST00000559933 NUDCQ9Y266 331 aa6.92□□□□□ -1.3
SPG11-220ENST00000559933 NWD2Q9ULI1 1742 aa6.92□□□□□ -1.3
SPG11-220ENST00000559933 NCAPD2Q15021 1401 aa6.92□□□□□ -1.3
SPG11-220ENST00000559933 APAF1O14727 1248 aa6.91□□□□□ -1.3
SPG11-220ENST00000559933 DIXDC1Q155Q3 683 aa6.91□□□□□ -1.3
SPG11-220ENST00000559933 NEUROD2Q15784 382 aa6.91□□□□□ -1.3
SPG11-220ENST00000559933 PLA2G2CQ5R387 149 aa6.91□□□□□ -1.3
SPG11-220ENST00000559933 HLA-CQ95604 372 aa6.91□□□□□ -1.3
SPG11-220ENST00000559933 REPIN1Q9BWE0 567 aaKnown RBP6.91□□□□□ -1.3
SPG11-220ENST00000559933 SPATA31A6Q5VVP1 1343 aa6.91□□□□□ -1.3
SPG11-220ENST00000559933 WDR17Q8IZU2 1322 aa6.91□□□□□ -1.3
SPG11-220ENST00000559933 DLG5Q8TDM6 1919 aa6.91□□□□□ -1.3
SPG11-220ENST00000559933 BCL9LQ86UU0 1499 aa6.91□□□□□ -1.3
SPG11-220ENST00000559933 SHANK3Q9BYB0 1731 aa6.9□□□□□ -1.3
SPG11-220ENST00000559933 C6orf229H3BNL8 230 aa6.9□□□□□ -1.3
SPG11-220ENST00000559933 TRIM66O15016 1216 aa6.9□□□□□ -1.3
SPG11-220ENST00000559933 FDX1P10109 184 aa6.9□□□□□ -1.3
SPG11-220ENST00000559933 FOXC1Q12948 553 aa6.9□□□□□ -1.3
SPG11-220ENST00000559933 PKDCCQ504Y2 493 aa6.9□□□□□ -1.3
SPG11-220ENST00000559933 TOM1L2Q6ZVM7 507 aa6.9□□□□□ -1.3
SPG11-220ENST00000559933 EMID1Q96A84 441 aaPredicted RBP6.9□□□□□ -1.3
SPG11-220ENST00000559933 RUNDC1Q96C34 613 aa6.9□□□□□ -1.3
SPG11-220ENST00000559933 THUMPD2Q9BTF0 503 aaKnown RBP6.9□□□□□ -1.3
SPG11-220ENST00000559933 AFF2P51816 1311 aa6.9□□□□□ -1.3
SPG11-220ENST00000559933 KDRP35968 1356 aa6.9□□□□□ -1.31
SPG11-220ENST00000559933 CRB1P82279 1406 aa6.9□□□□□ -1.31
SPG11-220ENST00000559933 TNFRSF10AO00220 468 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 EVA1CP58658 441 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 PRR20EP86478 221 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 PRR20CP86479 221 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 PRR20DP86480 221 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 PRR20BP86481 221 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 PRR20AP86496 221 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 GUCA2AQ02747 115 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 DCTN1Q14203 1278 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 CCDC24Q8N4L8 307 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 TCP11L2Q8N4U5 519 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 SPIRE2Q8WWL2 714 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 NGLY1Q96IV0 654 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 BEGAINQ9BUH8 593 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 MAPK8IP3Q9UPT6 1336 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 GLI3P10071 1580 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 LRRC37A3O60309 1634 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 PKD1L3Q7Z443 1732 aa6.89□□□□□ -1.31
SPG11-220ENST00000559933 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.89□□□□□ -1.31
SPG11-220ENST00000559933 PARP4Q9UKK3 1724 aaKnown RBP6.89□□□□□ -1.31
SPG11-220ENST00000559933 DISP2A7MBM2 1401 aa6.88□□□□□ -1.31
SPG11-220ENST00000559933 MMP16P51512 607 aa6.88□□□□□ -1.31
SPG11-220ENST00000559933 MTHFSDQ2M296 383 aaKnown RBP6.88□□□□□ -1.31
SPG11-220ENST00000559933 RETREG3Q86VR2 466 aa6.88□□□□□ -1.31
SPG11-220ENST00000559933 PARP9Q8IXQ6 854 aa6.88□□□□□ -1.31
SPG11-220ENST00000559933 CCDC9Q9Y3X0 531 aaKnown RBP6.88□□□□□ -1.31
SPG11-220ENST00000559933 OVOS2A0A0G2JMS6 1433 aa6.87□□□□□ -1.31
SPG11-220ENST00000559933 SPATA31A1Q5TZJ5 1347 aa6.87□□□□□ -1.31
SPG11-220ENST00000559933 DGAT1O75907 488 aa6.87□□□□□ -1.31
SPG11-220ENST00000559933 DXOO77932 396 aaKnown RBP6.87□□□□□ -1.31
SPG11-220ENST00000559933 JUNDP17535 347 aa6.87□□□□□ -1.31
SPG11-220ENST00000559933 TMPOP42166 694 aaKnown RBP6.87□□□□□ -1.31
SPG11-220ENST00000559933 TRIM67Q6ZTA4 783 aa6.87□□□□□ -1.31
SPG11-220ENST00000559933 MCM10Q7L590 875 aa6.87□□□□□ -1.31
SPG11-220ENST00000559933 UNC5CLQ8IV45 518 aa6.87□□□□□ -1.31
SPG11-220ENST00000559933 CARD10Q9BWT7 1032 aa6.87□□□□□ -1.31
SPG11-220ENST00000559933 USP21Q9UK80 565 aa6.87□□□□□ -1.31
SPG11-220ENST00000559933 TOGARAM1Q9Y4F4 1720 aa6.87□□□□□ -1.31
SPG11-220ENST00000559933 ATRNO75882 1429 aa6.86□□□□□ -1.31
SPG11-220ENST00000559933 SPATA31A5Q5VU36 1347 aa6.86□□□□□ -1.31
SPG11-220ENST00000559933 ZBED9Q6R2W3 1325 aa6.86□□□□□ -1.31
SPG11-220ENST00000559933 SPATA31A7Q8IWB4 1347 aa6.86□□□□□ -1.31
SPG11-220ENST00000559933 VIRMAQ69YN4 1812 aaKnown RBP6.86□□□□□ -1.31
SPG11-220ENST00000559933 FAM187AA6NFU0 413 aa6.86□□□□□ -1.31
SPG11-220ENST00000559933 RIPK4P57078 832 aa6.86□□□□□ -1.31
SPG11-220ENST00000559933 NFE2L2Q16236 605 aa6.86□□□□□ -1.31
SPG11-220ENST00000559933 ZNF530Q6P9A1 599 aaPredicted RBP6.86□□□□□ -1.31
SPG11-220ENST00000559933 FNBP4Q8N3X1 1017 aaPredicted RBP6.86□□□□□ -1.31
SPG11-220ENST00000559933 SYMPKQ92797 1274 aaKnown RBP6.86□□□□□ -1.31
SPG11-220ENST00000559933 SLC24A3Q9HC58 644 aa6.86□□□□□ -1.31
SPG11-220ENST00000559933 THSD7AQ9UPZ6 1657 aa6.86□□□□□ -1.31
SPG11-220ENST00000559933 KDM6AO15550 1401 aaPredicted RBP6.85□□□□□ -1.31
SPG11-220ENST00000559933 MAP3K5Q99683 1374 aa6.85□□□□□ -1.31
SPG11-220ENST00000559933 ZNF521Q96K83 1311 aa6.85□□□□□ -1.31
SPG11-220ENST00000559933 MOXD2PA6NHM9 499 aa6.85□□□□□ -1.31
SPG11-220ENST00000559933 SPDYE5A6NIY4 337 aa6.85□□□□□ -1.31
SPG11-220ENST00000559933 GDF9O60383 454 aa6.85□□□□□ -1.31
SPG11-220ENST00000559933 TATP17735 454 aaPredicted RBP6.85□□□□□ -1.31
SPG11-220ENST00000559933 NDUFV2P19404 249 aa6.85□□□□□ -1.31
SPG11-220ENST00000559933 PDE4DQ08499 809 aa6.85□□□□□ -1.31
SPG11-220ENST00000559933 CYP4X1Q8N118 509 aa6.85□□□□□ -1.31
SPG11-220ENST00000559933 RAPGEF4Q8WZA2 1011 aa6.85□□□□□ -1.31
SPG11-220ENST00000559933 TNS2Q63HR2 1409 aa6.84□□□□□ -1.31
SPG11-220ENST00000559933 DOT1LQ8TEK3 1739 aa6.84□□□□□ -1.31
SPG11-220ENST00000559933 CYP27B1O15528 508 aa6.84□□□□□ -1.31
SPG11-220ENST00000559933 IL2RBP14784 551 aa6.84□□□□□ -1.31
SPG11-220ENST00000559933 MYT1Q01538 1121 aa6.84□□□□□ -1.31
SPG11-220ENST00000559933 TRIM32Q13049 653 aa6.84□□□□□ -1.31
SPG11-220ENST00000559933 MTMR2Q13614 643 aa6.84□□□□□ -1.31
SPG11-220ENST00000559933 VPS72Q15906 364 aa6.84□□□□□ -1.31
SPG11-220ENST00000559933 FAM182BQ5T319 152 aa6.84□□□□□ -1.31
SPG11-220ENST00000559933 MPRIPQ6WCQ1 1025 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms