RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 HSP90AB3PQ58FF7 597 aa12.15□□□□□ -0.46
CUX1-216ENST00000558469 LINS1Q8NG48 757 aa12.15□□□□□ -0.46
CUX1-216ENST00000558469 COL24A1Q17RW2 1714 aa12.14□□□□□ -0.47
CUX1-216ENST00000558469 MYH3P11055 1940 aa12.14□□□□□ -0.47
CUX1-216ENST00000558469 NEURL1BA8MQ27 555 aa12.14□□□□□ -0.47
CUX1-216ENST00000558469 RGL2O15211 777 aa12.14□□□□□ -0.47
CUX1-216ENST00000558469 FKBP8Q14318 412 aa12.14□□□□□ -0.47
CUX1-216ENST00000558469 MVPQ14764 893 aaKnown RBP12.14□□□□□ -0.47
CUX1-216ENST00000558469 R3HDM1Q15032 1099 aaKnown RBP12.14□□□□□ -0.47
CUX1-216ENST00000558469 TBC1D9BQ66K14 1250 aa12.14□□□□□ -0.47
CUX1-216ENST00000558469 BICDL1Q6ZP65 573 aa12.14□□□□□ -0.47
CUX1-216ENST00000558469 ZNF34Q8IZ26 560 aa12.14□□□□□ -0.47
CUX1-216ENST00000558469 CRBNQ96SW2 442 aa12.14□□□□□ -0.47
CUX1-216ENST00000558469 ISCA1Q9BUE6 129 aa12.14□□□□□ -0.47
CUX1-216ENST00000558469 PDGFDQ9GZP0 370 aaPredicted RBP12.14□□□□□ -0.47
CUX1-216ENST00000558469 NIP7Q9Y221 180 aaKnown RBP eCLIP12.14□□□□□ -0.47
CUX1-216ENST00000558469 ALDH1L1O75891 902 aa12.13□□□□□ -0.47
CUX1-216ENST00000558469 NEFLP07196 543 aa12.13□□□□□ -0.47
CUX1-216ENST00000558469 CCDC191Q8NCU4 936 aa12.13□□□□□ -0.47
CUX1-216ENST00000558469 CWC25Q9NXE8 425 aaPredicted RBP12.13□□□□□ -0.47
CUX1-216ENST00000558469 UBN2Q6ZU65 1347 aa12.12□□□□□ -0.47
CUX1-216ENST00000558469 PSDA5PKW4 1024 aaPredicted RBP12.12□□□□□ -0.47
CUX1-216ENST00000558469 FAM177BA6PVY3 158 aa12.12□□□□□ -0.47
CUX1-216ENST00000558469 SOCS7O14512 581 aa12.12□□□□□ -0.47
CUX1-216ENST00000558469 TRIM28Q13263 835 aaKnown RBP12.12□□□□□ -0.47
CUX1-216ENST00000558469 GCKRQ14397 625 aa12.12□□□□□ -0.47
CUX1-216ENST00000558469 MSL1Q68DK7 614 aa12.12□□□□□ -0.47
CUX1-216ENST00000558469 NLRP10Q86W26 655 aa12.12□□□□□ -0.47
CUX1-216ENST00000558469 NLGN1Q8N2Q7 840 aa12.12□□□□□ -0.47
CUX1-216ENST00000558469 SETDB2Q96T68 719 aa12.12□□□□□ -0.47
CUX1-216ENST00000558469 C9orf78Q9NZ63 289 aaPredicted RBP12.12□□□□□ -0.47
CUX1-216ENST00000558469 DDX19BQ9UMR2 479 aa12.12□□□□□ -0.47
CUX1-216ENST00000558469 SPDYE2BA6NHP3 402 aa12.11□□□□□ -0.47
CUX1-216ENST00000558469 SPDYE6P0CI01 402 aa12.11□□□□□ -0.47
CUX1-216ENST00000558469 NFIXQ14938 502 aa12.11□□□□□ -0.47
CUX1-216ENST00000558469 SPDYE2Q495Y8 402 aa12.11□□□□□ -0.47
CUX1-216ENST00000558469 PARP10Q53GL7 1025 aa12.11□□□□□ -0.47
CUX1-216ENST00000558469 SUSD4Q5VX71 490 aa12.11□□□□□ -0.47
CUX1-216ENST00000558469 EXOC6Q8TAG9 804 aa12.11□□□□□ -0.47
CUX1-216ENST00000558469 USP44Q9H0E7 712 aa12.11□□□□□ -0.47
CUX1-216ENST00000558469 DDX60Q8IY21 1712 aaKnown RBP12.11□□□□□ -0.47
CUX1-216ENST00000558469 LAMB2P55268 1798 aa12.1□□□□□ -0.47
CUX1-216ENST00000558469 ZBTB7BO15156 539 aaPredicted RBP12.1□□□□□ -0.47
CUX1-216ENST00000558469 TM4SF1P30408 202 aa12.1□□□□□ -0.47
CUX1-216ENST00000558469 RTL5Q5HYW3 569 aaPredicted RBP12.1□□□□□ -0.47
CUX1-216ENST00000558469 PPP1R42Q7Z4L9 355 aa12.1□□□□□ -0.47
CUX1-216ENST00000558469 SLC16A10Q8TF71 515 aa12.1□□□□□ -0.47
CUX1-216ENST00000558469 JARID2Q92833 1246 aaPredicted RBP12.1□□□□□ -0.47
CUX1-216ENST00000558469 MEIS3Q99687 375 aa12.1□□□□□ -0.47
CUX1-216ENST00000558469 TRMT112Q9UI30 125 aaKnown RBP12.1□□□□□ -0.47
CUX1-216ENST00000558469 NRXN2Q9P2S2 1712 aa12.09□□□□□ -0.47
CUX1-216ENST00000558469 CARMIL3Q8ND23 1372 aa12.09□□□□□ -0.47
CUX1-216ENST00000558469 GRM8O00222 908 aa12.09□□□□□ -0.47
CUX1-216ENST00000558469 GNAI3P08754 354 aa12.09□□□□□ -0.47
CUX1-216ENST00000558469 NBPF7P0C2Y1 421 aaPredicted RBP12.09□□□□□ -0.47
CUX1-216ENST00000558469 UBE3BQ7Z3V4 1068 aa12.09□□□□□ -0.47
CUX1-216ENST00000558469 NBPF5PQ86XG9 351 aaPredicted RBP12.09□□□□□ -0.47
CUX1-216ENST00000558469 FAM89AQ96GI7 184 aa12.09□□□□□ -0.47
CUX1-216ENST00000558469 UTP14AQ9BVJ6 771 aaKnown RBP12.09□□□□□ -0.47
CUX1-216ENST00000558469 CHMP4BQ9H444 224 aaKnown RBP12.09□□□□□ -0.47
CUX1-216ENST00000558469 IBTKQ9P2D0 1353 aaPredicted RBP12.08□□□□□ -0.48
CUX1-216ENST00000558469 H7C1W4 665 aa12.08□□□□□ -0.48
CUX1-216ENST00000558469 POLRMTO00411 1230 aaKnown RBP12.08□□□□□ -0.48
CUX1-216ENST00000558469 NPHP1O15259 732 aa12.08□□□□□ -0.48
CUX1-216ENST00000558469 ZBTB7AO95365 584 aa12.08□□□□□ -0.48
CUX1-216ENST00000558469 NTSR2O95665 410 aa12.08□□□□□ -0.48
CUX1-216ENST00000558469 PCCAP05165 728 aaPredicted RBP12.08□□□□□ -0.48
CUX1-216ENST00000558469 MMP10P09238 476 aa12.08□□□□□ -0.48
CUX1-216ENST00000558469 UBTFL1P0CB47 393 aaPredicted RBP12.08□□□□□ -0.48
CUX1-216ENST00000558469 GTF2E1P29083 439 aaPredicted RBP12.08□□□□□ -0.48
CUX1-216ENST00000558469 DDR1Q08345 913 aa12.08□□□□□ -0.48
CUX1-216ENST00000558469 NUTM1Q86Y26 1132 aa12.08□□□□□ -0.48
CUX1-216ENST00000558469 SYNE4Q8N205 404 aa12.08□□□□□ -0.48
CUX1-216ENST00000558469 ZBTB38Q8NAP3 1195 aaPredicted RBP12.08□□□□□ -0.48
CUX1-216ENST00000558469 NYXQ9GZU5 481 aa12.08□□□□□ -0.48
CUX1-216ENST00000558469 PARP3Q9Y6F1 533 aa12.08□□□□□ -0.48
CUX1-216ENST00000558469 UTYO14607 1347 aa12.08□□□□□ -0.48
CUX1-216ENST00000558469 SERPINB2P05120 415 aa12.07□□□□□ -0.48
CUX1-216ENST00000558469 ERFEQ4G0M1 354 aa12.07□□□□□ -0.48
CUX1-216ENST00000558469 TPTE2Q6XPS3 522 aa12.07□□□□□ -0.48
CUX1-216ENST00000558469 ANKRD31Q8N7Z5 1873 aa12.07□□□□□ -0.48
CUX1-216ENST00000558469 ZBTB40Q9NUA8 1239 aa12.07□□□□□ -0.48
CUX1-216ENST00000558469 SH3TC1Q8TE82 1336 aa12.07□□□□□ -0.48
CUX1-216ENST00000558469 CASP7P55210 303 aa12.06□□□□□ -0.48
CUX1-216ENST00000558469 REM2Q8IYK8 340 aaPredicted RBP12.06□□□□□ -0.48
CUX1-216ENST00000558469 CCDC24Q8N4L8 307 aa12.06□□□□□ -0.48
CUX1-216ENST00000558469 CNBD1Q8NA66 436 aa12.06□□□□□ -0.48
CUX1-216ENST00000558469 MTFR1LQ9H019 292 aa12.06□□□□□ -0.48
CUX1-216ENST00000558469 C1orf115Q9H7X2 142 aa12.06□□□□□ -0.48
CUX1-216ENST00000558469 LRRFIP2Q9Y608 721 aaKnown RBP12.06□□□□□ -0.48
CUX1-216ENST00000558469 TAF1P21675 1872 aa12.06□□□□□ -0.48
CUX1-216ENST00000558469 SPEF2Q9C093 1822 aa12.05□□□□□ -0.48
CUX1-216ENST00000558469 IRS4O14654 1257 aaPredicted RBP12.05□□□□□ -0.48
CUX1-216ENST00000558469 GNAI2P04899 355 aa12.05□□□□□ -0.48
CUX1-216ENST00000558469 HCLS1P14317 486 aaPredicted RBP12.05□□□□□ -0.48
CUX1-216ENST00000558469 SUCLG2Q96I99 432 aa12.05□□□□□ -0.48
CUX1-216ENST00000558469 HDAC5Q9UQL6 1122 aa12.05□□□□□ -0.48
CUX1-216ENST00000558469 TNRC6CQ9HCJ0 1690 aaKnown RBP12.05□□□□□ -0.48
CUX1-216ENST00000558469 CDHR2Q9BYE9 1310 aa12.05□□□□□ -0.48
CUX1-216ENST00000558469 ST5P78524 1137 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms