RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 TMEM94Q12767 1356 aa8.8□□□□□ -1
VPS13C-206ENST00000558338 RAD50Q92878 1312 aa8.8□□□□□ -1
VPS13C-206ENST00000558338 GRM8O00222 908 aa8.8□□□□□ -1
VPS13C-206ENST00000558338 HIP1O00291 1037 aa8.8□□□□□ -1
VPS13C-206ENST00000558338 HSPA4P34932 840 aa8.8□□□□□ -1
VPS13C-206ENST00000558338 NEXNQ0ZGT2 675 aa8.8□□□□□ -1
VPS13C-206ENST00000558338 LARP1Q6PKG0 1096 aaKnown RBP8.8□□□□□ -1
VPS13C-206ENST00000558338 KIAA1211Q6ZU35 1233 aa8.8□□□□□ -1
VPS13C-206ENST00000558338 NUTM1Q86Y26 1132 aa8.8□□□□□ -1
VPS13C-206ENST00000558338 IFNL2Q8IZJ0 200 aa8.8□□□□□ -1
VPS13C-206ENST00000558338 AXIN2Q9Y2T1 843 aa8.8□□□□□ -1
VPS13C-206ENST00000558338 CPDO75976 1380 aa8.8□□□□□ -1
VPS13C-206ENST00000558338 SGSM2O43147 1006 aa8.79□□□□□ -1
VPS13C-206ENST00000558338 XRCC6P12956 609 aaKnown RBP eCLIP8.79□□□□□ -1
VPS13C-206ENST00000558338 PHKG2P15735 406 aa8.79□□□□□ -1
VPS13C-206ENST00000558338 MMRN1Q13201 1228 aa8.79□□□□□ -1
VPS13C-206ENST00000558338 ZNF790Q6PG37 636 aa8.79□□□□□ -1
VPS13C-206ENST00000558338 KCNV2Q8TDN2 545 aa8.79□□□□□ -1
VPS13C-206ENST00000558338 TMX3Q96JJ7 454 aa8.79□□□□□ -1
VPS13C-206ENST00000558338 DDX49Q9Y6V7 483 aaKnown RBP8.79□□□□□ -1
VPS13C-206ENST00000558338 MEGF6O75095 1541 aa8.79□□□□□ -1
VPS13C-206ENST00000558338 STRCP1A6NGW2 1772 aa8.79□□□□□ -1
VPS13C-206ENST00000558338 IFIT2P09913 472 aaKnown RBP8.79□□□□□ -1
VPS13C-206ENST00000558338 KIF12Q96FN5 646 aa8.79□□□□□ -1
VPS13C-206ENST00000558338 DIAPH3Q9NSV4 1193 aa8.79□□□□□ -1
VPS13C-206ENST00000558338 ECHDC1Q9NTX5 307 aa8.79□□□□□ -1
VPS13C-206ENST00000558338 NLRP2Q9NX02 1062 aa8.79□□□□□ -1
VPS13C-206ENST00000558338 TRPC6Q9Y210 931 aa8.79□□□□□ -1
VPS13C-206ENST00000558338 COL15A1P39059 1388 aa8.78□□□□□ -1
VPS13C-206ENST00000558338 ANXA1P04083 346 aa8.78□□□□□ -1
VPS13C-206ENST00000558338 CSB-PGBD3P0DP91 1061 aa8.78□□□□□ -1
VPS13C-206ENST00000558338 ZC3H6P61129 1189 aaKnown RBP8.78□□□□□ -1
VPS13C-206ENST00000558338 MCTP1Q6DN14 999 aa8.78□□□□□ -1
VPS13C-206ENST00000558338 RIC3Q7Z5B4 369 aa8.78□□□□□ -1
VPS13C-206ENST00000558338 UNC5CLQ8IV45 518 aa8.78□□□□□ -1
VPS13C-206ENST00000558338 TTC5Q8N0Z6 440 aa8.78□□□□□ -1
VPS13C-206ENST00000558338 EVI5LQ96CN4 794 aa8.78□□□□□ -1
VPS13C-206ENST00000558338 DCAF5Q96JK2 942 aa8.78□□□□□ -1
VPS13C-206ENST00000558338 ERBB4Q15303 1308 aa8.77□□□□□ -1
VPS13C-206ENST00000558338 MBD3O95983 291 aa8.77□□□□□ -1.01
VPS13C-206ENST00000558338 G3BP1Q13283 466 aaKnown RBP eCLIP8.77□□□□□ -1.01
VPS13C-206ENST00000558338 PROSER3Q2NL68 480 aa8.77□□□□□ -1.01
VPS13C-206ENST00000558338 ZGPATQ8N5A5 531 aaKnown RBP8.77□□□□□ -1.01
VPS13C-206ENST00000558338 ANP32BQ92688 251 aaKnown RBP8.77□□□□□ -1.01
VPS13C-206ENST00000558338 PALD1Q9ULE6 856 aa8.77□□□□□ -1.01
VPS13C-206ENST00000558338 AFDNP55196 1824 aaKnown RBP8.77□□□□□ -1.01
VPS13C-206ENST00000558338 SNRPA1P09661 255 aaKnown RBP8.77□□□□□ -1.01
VPS13C-206ENST00000558338 ZNF445P59923 1031 aa8.77□□□□□ -1.01
VPS13C-206ENST00000558338 FMNL2Q96PY5 1086 aa8.77□□□□□ -1.01
VPS13C-206ENST00000558338 LSG1Q9H089 658 aaKnown RBP8.77□□□□□ -1.01
VPS13C-206ENST00000558338 COLQQ9Y215 455 aaPredicted RBP8.77□□□□□ -1.01
VPS13C-206ENST00000558338 MTMR7Q9Y216 660 aa8.77□□□□□ -1.01
VPS13C-206ENST00000558338 ARFGEF2Q9Y6D5 1785 aa8.76□□□□□ -1.01
VPS13C-206ENST00000558338 SPATA31A3Q5VYP0 1347 aa8.76□□□□□ -1.01
VPS13C-206ENST00000558338 NEURL1BA8MQ27 555 aa8.76□□□□□ -1.01
VPS13C-206ENST00000558338 BRD1O95696 1058 aa8.76□□□□□ -1.01
VPS13C-206ENST00000558338 TIE1P35590 1138 aa8.76□□□□□ -1.01
VPS13C-206ENST00000558338 PDIA6Q15084 440 aa8.76□□□□□ -1.01
VPS13C-206ENST00000558338 CWF19L2Q2TBE0 894 aaKnown RBP8.76□□□□□ -1.01
VPS13C-206ENST00000558338 SUCLG2Q96I99 432 aa8.76□□□□□ -1.01
VPS13C-206ENST00000558338 METTL22Q9BUU2 404 aaPredicted RBP8.76□□□□□ -1.01
VPS13C-206ENST00000558338 LMBRD1Q9NUN5 540 aa8.76□□□□□ -1.01
VPS13C-206ENST00000558338 WDR33Q9C0J8 1336 aaKnown RBP8.76□□□□□ -1.01
VPS13C-206ENST00000558338 RFX7Q2KHR2 1363 aa8.75□□□□□ -1.01
VPS13C-206ENST00000558338 AACSQ86V21 672 aa8.75□□□□□ -1.01
VPS13C-206ENST00000558338 BICC1Q9H694 974 aaKnown RBP8.75□□□□□ -1.01
VPS13C-206ENST00000558338 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.75□□□□□ -1.01
VPS13C-206ENST00000558338 AIMP1Q12904 312 aaKnown RBP8.74□□□□□ -1.01
VPS13C-206ENST00000558338 XAGE3Q8WTP9 111 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 SYAP1Q96A49 352 aaPredicted RBP8.74□□□□□ -1.01
VPS13C-206ENST00000558338 TM6SF1Q9BZW5 370 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 SNX14Q9Y5W7 946 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 PAPPAQ13219 1627 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 UBR2Q8IWV8 1755 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 PCDH11XQ9BZA7 1347 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 PCDH11YQ9BZA8 1340 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 GLI3P10071 1580 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 PRAMEF22A3QJZ6 481 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 MAP4K4O95819 1239 aaPredicted RBP8.74□□□□□ -1.01
VPS13C-206ENST00000558338 IGKV5-2P06315 115 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 CABP4P57796 275 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 CCDC173Q0VFZ6 552 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 GCKRQ14397 625 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 CWC27Q6UX04 472 aaKnown RBP8.74□□□□□ -1.01
VPS13C-206ENST00000558338 NFATC2IPQ8NCF5 419 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 KCNB2Q92953 911 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 ZSCAN31Q96LW9 406 aaPredicted RBP8.74□□□□□ -1.01
VPS13C-206ENST00000558338 LIMCH1Q9UPQ0 1083 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 ZDHHC9Q9Y397 364 aa8.74□□□□□ -1.01
VPS13C-206ENST00000558338 XIRP1Q702N8 1843 aaKnown RBP8.73□□□□□ -1.01
VPS13C-206ENST00000558338 MYL6BP14649 208 aa8.73□□□□□ -1.01
VPS13C-206ENST00000558338 ZKSCAN1P17029 563 aaPredicted RBP8.73□□□□□ -1.01
VPS13C-206ENST00000558338 NCLP19338 710 aaKnown RBP8.73□□□□□ -1.01
VPS13C-206ENST00000558338 SLC39A6Q13433 755 aa8.73□□□□□ -1.01
VPS13C-206ENST00000558338 PKP1Q13835 747 aa8.73□□□□□ -1.01
VPS13C-206ENST00000558338 ANKRD13DQ6ZTN6 518 aa8.73□□□□□ -1.01
VPS13C-206ENST00000558338 COPS6Q7L5N1 327 aa8.73□□□□□ -1.01
VPS13C-206ENST00000558338 CCDC82Q8N4S0 544 aa8.73□□□□□ -1.01
VPS13C-206ENST00000558338 TRIM44Q96DX7 344 aaPredicted RBP8.73□□□□□ -1.01
VPS13C-206ENST00000558338 ZNF496Q96IT1 587 aaPredicted RBP8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms