RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CLASRPQ8N2M8 674 aaKnown RBP20.64■□□□□ 0.89
LDLR-206ENST00000557958 IL1RAPL2Q9NP60 686 aa20.64■□□□□ 0.89
LDLR-206ENST00000557958 IL6STP40189 918 aaPredicted RBP20.63■□□□□ 0.89
LDLR-206ENST00000557958 TJP1Q07157 1748 aa20.63■□□□□ 0.89
LDLR-206ENST00000557958 REC8O95072 547 aa20.62■□□□□ 0.89
LDLR-206ENST00000557958 G3BP1Q13283 466 aaKnown RBP eCLIP20.62■□□□□ 0.89
LDLR-206ENST00000557958 JARID2Q92833 1246 aaPredicted RBP20.62■□□□□ 0.89
LDLR-206ENST00000557958 GPATCH3Q96I76 525 aa20.62■□□□□ 0.89
LDLR-206ENST00000557958 AFDNP55196 1824 aaKnown RBP20.62■□□□□ 0.89
LDLR-206ENST00000557958 A0A087WZG4 1122 aa20.62■□□□□ 0.89
LDLR-206ENST00000557958 ILDR1Q86SU0 546 aaPredicted RBP20.62■□□□□ 0.89
LDLR-206ENST00000557958 DZIP3Q86Y13 1208 aaKnown RBP20.62■□□□□ 0.89
LDLR-206ENST00000557958 KAZALD1Q96I82 304 aa20.62■□□□□ 0.89
LDLR-206ENST00000557958 CWC25Q9NXE8 425 aaPredicted RBP20.62■□□□□ 0.89
LDLR-206ENST00000557958 SLC4A3P48751 1232 aa20.61■□□□□ 0.89
LDLR-206ENST00000557958 SMIM5Q71RC9 77 aa20.61■□□□□ 0.89
LDLR-206ENST00000557958 TTC41PQ6P2S7 1318 aa20.61■□□□□ 0.89
LDLR-206ENST00000557958 UBE3BQ7Z3V4 1068 aa20.6■□□□□ 0.89
LDLR-206ENST00000557958 CCDC191Q8NCU4 936 aa20.6■□□□□ 0.89
LDLR-206ENST00000557958 SBF2Q86WG5 1849 aa20.6■□□□□ 0.89
LDLR-206ENST00000557958 ERC2O15083 957 aa20.6■□□□□ 0.89
LDLR-206ENST00000557958 APBA3O96018 575 aa20.6■□□□□ 0.89
LDLR-206ENST00000557958 RTL5Q5HYW3 569 aaPredicted RBP20.6■□□□□ 0.89
LDLR-206ENST00000557958 NUP188Q5SRE5 1749 aa20.6■□□□□ 0.89
LDLR-206ENST00000557958 MAP3K15Q6ZN16 1313 aa20.59■□□□□ 0.89
LDLR-206ENST00000557958 TRIM6-TRIM34B2RNG4 842 aa20.59■□□□□ 0.89
LDLR-206ENST00000557958 EIF5P55010 431 aaKnown RBP20.59■□□□□ 0.89
LDLR-206ENST00000557958 HLFQ16534 295 aa20.59■□□□□ 0.89
LDLR-206ENST00000557958 EP400Q96L91 3159 aa20.59■□□□□ 0.89
LDLR-206ENST00000557958 USP42Q9H9J4 1324 aaKnown RBP20.59■□□□□ 0.89
LDLR-206ENST00000557958 NUTM1Q86Y26 1132 aa20.58■□□□□ 0.89
LDLR-206ENST00000557958 IFIT2P09913 472 aaKnown RBP20.58■□□□□ 0.88
LDLR-206ENST00000557958 RABL6Q3YEC7 729 aaPredicted RBP20.58■□□□□ 0.88
LDLR-206ENST00000557958 HSCBQ8IWL3 235 aa20.58■□□□□ 0.88
LDLR-206ENST00000557958 GNPATO15228 680 aa20.57■□□□□ 0.88
LDLR-206ENST00000557958 GPTP24298 496 aa20.57■□□□□ 0.88
LDLR-206ENST00000557958 TCIRG1Q13488 830 aa20.57■□□□□ 0.88
LDLR-206ENST00000557958 TSHZ3Q63HK5 1081 aa20.57■□□□□ 0.88
LDLR-206ENST00000557958 RILPL2Q969X0 211 aa20.57■□□□□ 0.88
LDLR-206ENST00000557958 LRRC4BQ9NT99 713 aa20.57■□□□□ 0.88
LDLR-206ENST00000557958 PA2G4Q9UQ80 394 aaKnown RBP20.57■□□□□ 0.88
LDLR-206ENST00000557958 H7C1W4 665 aa20.56■□□□□ 0.88
LDLR-206ENST00000557958 GLRX3O76003 335 aaKnown RBP20.56■□□□□ 0.88
LDLR-206ENST00000557958 TBC1D2Q9BYX2 928 aa20.56■□□□□ 0.88
LDLR-206ENST00000557958 COPRSQ9NQ92 184 aa20.56■□□□□ 0.88
LDLR-206ENST00000557958 GIGYF2Q6Y7W6 1299 aaKnown RBP20.55■□□□□ 0.88
LDLR-206ENST00000557958 CNTROBQ8N137 903 aa20.55■□□□□ 0.88
LDLR-206ENST00000557958 PHF14O94880 888 aa20.54■□□□□ 0.88
LDLR-206ENST00000557958 CASP7P55210 303 aa20.54■□□□□ 0.88
LDLR-206ENST00000557958 SNX21Q969T3 373 aa20.54■□□□□ 0.88
LDLR-206ENST00000557958 AK7Q96M32 723 aa20.54■□□□□ 0.88
LDLR-206ENST00000557958 CNTNAP4Q9C0A0 1308 aa20.54■□□□□ 0.88
LDLR-206ENST00000557958 TUBGCP6Q96RT7 1819 aa20.54■□□□□ 0.88
LDLR-206ENST00000557958 DEKP35659 375 aaKnown RBP20.54■□□□□ 0.88
LDLR-206ENST00000557958 TRIM28Q13263 835 aaKnown RBP20.54■□□□□ 0.88
LDLR-206ENST00000557958 HSP90AB3PQ58FF7 597 aa20.54■□□□□ 0.88
LDLR-206ENST00000557958 PI4K2BQ8TCG2 481 aa20.54■□□□□ 0.88
LDLR-206ENST00000557958 USP26Q9BXU7 913 aa20.54■□□□□ 0.88
LDLR-206ENST00000557958 ECHDC1Q9NTX5 307 aa20.54■□□□□ 0.88
LDLR-206ENST00000557958 RTCBQ9Y3I0 505 aaKnown RBP20.54■□□□□ 0.88
LDLR-206ENST00000557958 TXNRD1Q16881 649 aa20.53■□□□□ 0.88
LDLR-206ENST00000557958 EPHA10Q5JZY3 1008 aa20.53■□□□□ 0.88
LDLR-206ENST00000557958 RC3H1Q5TC82 1133 aaKnown RBP20.53■□□□□ 0.88
LDLR-206ENST00000557958 AACSQ86V21 672 aa20.53■□□□□ 0.88
LDLR-206ENST00000557958 FAM177BA6PVY3 158 aa20.52■□□□□ 0.88
LDLR-206ENST00000557958 ERVV-1B6SEH8 477 aa20.52■□□□□ 0.88
LDLR-206ENST00000557958 ISCA1Q9BUE6 129 aa20.52■□□□□ 0.88
LDLR-206ENST00000557958 RPS6KA4O75676 772 aa20.52■□□□□ 0.87
LDLR-206ENST00000557958 CHMLP26374 656 aa20.52■□□□□ 0.87
LDLR-206ENST00000557958 SIL1Q9H173 461 aa20.52■□□□□ 0.87
LDLR-206ENST00000557958 MYH14Q7Z406 1995 aaKnown RBP20.51■□□□□ 0.87
LDLR-206ENST00000557958 SLC27A3Q5K4L6 730 aa20.51■□□□□ 0.87
LDLR-206ENST00000557958 ESYT1Q9BSJ8 1104 aa20.51■□□□□ 0.87
LDLR-206ENST00000557958 EPB41L2O43491 1005 aaKnown RBP20.5■□□□□ 0.87
LDLR-206ENST00000557958 SASH1O94885 1247 aa20.5■□□□□ 0.87
LDLR-206ENST00000557958 CAMTA2O94983 1202 aa20.5■□□□□ 0.87
LDLR-206ENST00000557958 MCCP23508 829 aa20.5■□□□□ 0.87
LDLR-206ENST00000557958 RABEP1Q15276 862 aa20.5■□□□□ 0.87
LDLR-206ENST00000557958 LMBR1LQ6UX01 489 aa20.5■□□□□ 0.87
LDLR-206ENST00000557958 PROM2Q8N271 834 aa20.5■□□□□ 0.87
LDLR-206ENST00000557958 RFX5P48382 616 aaPredicted RBP20.5■□□□□ 0.87
LDLR-206ENST00000557958 FOXO4P98177 505 aa20.49■□□□□ 0.87
LDLR-206ENST00000557958 PTPN12Q05209 780 aaKnown RBP20.49■□□□□ 0.87
LDLR-206ENST00000557958 AMIGO3Q86WK7 504 aa20.49■□□□□ 0.87
LDLR-206ENST00000557958 FAM89AQ96GI7 184 aa20.49■□□□□ 0.87
LDLR-206ENST00000557958 CHMP3Q9Y3E7 222 aa20.49■□□□□ 0.87
LDLR-206ENST00000557958 COL5A3P25940 1745 aaPredicted RBP20.49■□□□□ 0.87
LDLR-206ENST00000557958 ZPR1O75312 459 aa20.48■□□□□ 0.87
LDLR-206ENST00000557958 TRAPPC3LQ5T215 181 aa20.48■□□□□ 0.87
LDLR-206ENST00000557958 BICDL1Q6ZP65 573 aa20.48■□□□□ 0.87
LDLR-206ENST00000557958 KIF2CQ99661 725 aa20.48■□□□□ 0.87
LDLR-206ENST00000557958 SRP68Q9UHB9 627 aaKnown RBP20.48■□□□□ 0.87
LDLR-206ENST00000557958 LY75O60449 1722 aa20.48■□□□□ 0.87
LDLR-206ENST00000557958 PLSCR1O15162 318 aa20.47■□□□□ 0.87
LDLR-206ENST00000557958 PCCAP05165 728 aaPredicted RBP20.47■□□□□ 0.87
LDLR-206ENST00000557958 NBR1Q14596 966 aa20.47■□□□□ 0.87
LDLR-206ENST00000557958 USPL1Q5W0Q7 1092 aa20.47■□□□□ 0.87
LDLR-206ENST00000557958 NLRP10Q86W26 655 aa20.47■□□□□ 0.87
LDLR-206ENST00000557958 ARHGEF1Q92888 912 aaKnown RBP20.47■□□□□ 0.87
LDLR-206ENST00000557958 ZNF831Q5JPB2 1677 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms