RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 PAPPA2Q9BXP8 1791 aa18.31■□□□□ 0.52
TMEM260-215ENST00000557626 SNED1Q8TER0 1413 aa18.31■□□□□ 0.52
TMEM260-215ENST00000557626 RBBP6Q7Z6E9 1792 aaKnown RBP18.3■□□□□ 0.52
TMEM260-215ENST00000557626 SLC10A3P09131 477 aa18.3■□□□□ 0.52
TMEM260-215ENST00000557626 REM2Q8IYK8 340 aaPredicted RBP18.3■□□□□ 0.52
TMEM260-215ENST00000557626 C2orf69Q8N8R5 385 aa18.3■□□□□ 0.52
TMEM260-215ENST00000557626 ALDH1B1P30837 517 aa18.29■□□□□ 0.52
TMEM260-215ENST00000557626 USP48Q86UV5 1035 aa18.29■□□□□ 0.52
TMEM260-215ENST00000557626 NBPF5PQ86XG9 351 aaPredicted RBP18.29■□□□□ 0.52
TMEM260-215ENST00000557626 NIM1KQ8IY84 436 aa18.29■□□□□ 0.52
TMEM260-215ENST00000557626 SLC52A2Q9HAB3 445 aa18.29■□□□□ 0.52
TMEM260-215ENST00000557626 UNC80Q8N2C7 3258 aa18.28■□□□□ 0.52
TMEM260-215ENST00000557626 KLRG2A4D1S0 409 aaPredicted RBP18.28■□□□□ 0.52
TMEM260-215ENST00000557626 STARD3NLO95772 234 aa18.28■□□□□ 0.52
TMEM260-215ENST00000557626 VSIG10Q8N0Z9 540 aa18.28■□□□□ 0.52
TMEM260-215ENST00000557626 INTS3Q68E01 1043 aaKnown RBP18.27■□□□□ 0.52
TMEM260-215ENST00000557626 GMPSP49915 693 aaPredicted RBP18.26■□□□□ 0.51
TMEM260-215ENST00000557626 HIRAP54198 1017 aaPredicted RBP18.26■□□□□ 0.51
TMEM260-215ENST00000557626 DLK2Q6UY11 383 aa18.26■□□□□ 0.51
TMEM260-215ENST00000557626 TBC1D8O95759 1140 aa18.25■□□□□ 0.51
TMEM260-215ENST00000557626 CC2D2BQ6DHV5 1058 aa18.25■□□□□ 0.51
TMEM260-215ENST00000557626 NPM2Q86SE8 214 aaKnown RBP18.25■□□□□ 0.51
TMEM260-215ENST00000557626 TRPM4Q8TD43 1214 aa18.25■□□□□ 0.51
TMEM260-215ENST00000557626 OTUD5Q96G74 571 aa18.25■□□□□ 0.51
TMEM260-215ENST00000557626 CAMTA2O94983 1202 aa18.24■□□□□ 0.51
TMEM260-215ENST00000557626 TESK2Q96S53 571 aa18.24■□□□□ 0.51
TMEM260-215ENST00000557626 POLKQ9UBT6 870 aa18.24■□□□□ 0.51
TMEM260-215ENST00000557626 NPC1L1Q9UHC9 1359 aa18.24■□□□□ 0.51
TMEM260-215ENST00000557626 CDHR2Q9BYE9 1310 aa18.23■□□□□ 0.51
TMEM260-215ENST00000557626 UBR2Q8IWV8 1755 aa18.23■□□□□ 0.51
TMEM260-215ENST00000557626 MRC1P22897 1456 aa18.23■□□□□ 0.51
TMEM260-215ENST00000557626 GPR25O00155 361 aa18.22■□□□□ 0.51
TMEM260-215ENST00000557626 CHRDL2Q6WN34 429 aa18.22■□□□□ 0.51
TMEM260-215ENST00000557626 BCL2L13Q9BXK5 485 aa18.22■□□□□ 0.51
TMEM260-215ENST00000557626 POLR2AP24928 1970 aaKnown RBP18.21■□□□□ 0.51
TMEM260-215ENST00000557626 H0YGN5 161 aa18.21■□□□□ 0.51
TMEM260-215ENST00000557626 PPIP5K2O43314 1243 aa18.21■□□□□ 0.51
TMEM260-215ENST00000557626 IL6STP40189 918 aaPredicted RBP18.21■□□□□ 0.51
TMEM260-215ENST00000557626 CXCL9Q07325 125 aa18.21■□□□□ 0.51
TMEM260-215ENST00000557626 KRT26Q7Z3Y9 468 aa18.21■□□□□ 0.51
TMEM260-215ENST00000557626 EN2P19622 333 aaPredicted RBP18.2■□□□□ 0.5
TMEM260-215ENST00000557626 GRIPAP1Q4V328 841 aa18.2■□□□□ 0.5
TMEM260-215ENST00000557626 NOM1Q5C9Z4 860 aaKnown RBP18.2■□□□□ 0.5
TMEM260-215ENST00000557626 RASAL3Q86YV0 1011 aa18.2■□□□□ 0.5
TMEM260-215ENST00000557626 SLC24A1O60721 1099 aa18.19■□□□□ 0.5
TMEM260-215ENST00000557626 TPTE2Q6XPS3 522 aa18.19■□□□□ 0.5
TMEM260-215ENST00000557626 LGR6Q9HBX8 967 aa18.19■□□□□ 0.5
TMEM260-215ENST00000557626 FKTNO75072 461 aa18.18■□□□□ 0.5
TMEM260-215ENST00000557626 AOC3Q16853 763 aa18.18■□□□□ 0.5
TMEM260-215ENST00000557626 AEBP1Q8IUX7 1158 aa18.18■□□□□ 0.5
TMEM260-215ENST00000557626 RBM27Q9P2N5 1060 aaKnown RBP18.18■□□□□ 0.5
TMEM260-215ENST00000557626 ZNRF3Q9ULT6 936 aa18.18■□□□□ 0.5
TMEM260-215ENST00000557626 DZIP3Q86Y13 1208 aaKnown RBP18.17■□□□□ 0.5
TMEM260-215ENST00000557626 ADM5C9JUS6 153 aa18.16■□□□□ 0.5
TMEM260-215ENST00000557626 H7C1D1 291 aa18.16■□□□□ 0.5
TMEM260-215ENST00000557626 TTC5Q8N0Z6 440 aa18.16■□□□□ 0.5
TMEM260-215ENST00000557626 CNOT7Q9UIV1 285 aaKnown RBP18.16■□□□□ 0.5
TMEM260-215ENST00000557626 LAMA3Q16787 3333 aa18.16■□□□□ 0.5
TMEM260-215ENST00000557626 SHTN1A0MZ66 631 aa18.15■□□□□ 0.5
TMEM260-215ENST00000557626 RNMTO43148 476 aaKnown RBP18.15■□□□□ 0.5
TMEM260-215ENST00000557626 COL25A1Q9BXS0 654 aaPredicted RBP18.15■□□□□ 0.5
TMEM260-215ENST00000557626 FAM177BA6PVY3 158 aa18.14■□□□□ 0.49
TMEM260-215ENST00000557626 CLEC4GQ6UXB4 293 aa18.14■□□□□ 0.49
TMEM260-215ENST00000557626 DCPSQ96C86 337 aaKnown RBP18.14■□□□□ 0.49
TMEM260-215ENST00000557626 SIN3AQ96ST3 1273 aa18.14■□□□□ 0.49
TMEM260-215ENST00000557626 ZNF652Q9Y2D9 606 aa18.14■□□□□ 0.49
TMEM260-215ENST00000557626 TRIM17Q9Y577 477 aa18.14■□□□□ 0.49
TMEM260-215ENST00000557626 RAD17O75943 681 aa18.13■□□□□ 0.49
TMEM260-215ENST00000557626 TNNT2P45379 298 aaPredicted RBP18.13■□□□□ 0.49
TMEM260-215ENST00000557626 NEUROD1Q13562 356 aa18.13■□□□□ 0.49
TMEM260-215ENST00000557626 TNIP1Q15025 636 aa18.13■□□□□ 0.49
TMEM260-215ENST00000557626 MICALL2Q8IY33 904 aa18.13■□□□□ 0.49
TMEM260-215ENST00000557626 CARD14Q9BXL6 1004 aa18.13■□□□□ 0.49
TMEM260-215ENST00000557626 TEX13AQ9BXU3 409 aaPredicted RBP18.13■□□□□ 0.49
TMEM260-215ENST00000557626 GTF2E1P29083 439 aaPredicted RBP18.12■□□□□ 0.49
TMEM260-215ENST00000557626 CRY2Q49AN0 593 aa18.12■□□□□ 0.49
TMEM260-215ENST00000557626 VPS33BQ9H267 617 aa18.12■□□□□ 0.49
TMEM260-215ENST00000557626 NIP7Q9Y221 180 aaKnown RBP eCLIP18.12■□□□□ 0.49
TMEM260-215ENST00000557626 TCERG1O14776 1098 aaKnown RBP18.11■□□□□ 0.49
TMEM260-215ENST00000557626 A1BGP04217 495 aa18.11■□□□□ 0.49
TMEM260-215ENST00000557626 SLC51AQ86UW1 340 aa18.11■□□□□ 0.49
TMEM260-215ENST00000557626 RPGRQ92834 1020 aaKnown RBP18.11■□□□□ 0.49
TMEM260-215ENST00000557626 HEG1Q9ULI3 1381 aa18.11■□□□□ 0.49
TMEM260-215ENST00000557626 VCANP13611 3396 aa18.11■□□□□ 0.49
TMEM260-215ENST00000557626 PPEF1O14829 653 aaPredicted RBP18.1■□□□□ 0.49
TMEM260-215ENST00000557626 SAMD7Q7Z3H4 446 aa18.1■□□□□ 0.49
TMEM260-215ENST00000557626 TMEM106CQ9BVX2 250 aa18.1■□□□□ 0.49
TMEM260-215ENST00000557626 SULT6B1Q6IMI4 303 aa18.09■□□□□ 0.49
TMEM260-215ENST00000557626 OTOP1Q7RTM1 612 aa18.09■□□□□ 0.49
TMEM260-215ENST00000557626 ZNF496Q96IT1 587 aaPredicted RBP18.09■□□□□ 0.49
TMEM260-215ENST00000557626 TM4SF4P48230 202 aa18.08■□□□□ 0.48
TMEM260-215ENST00000557626 TBC1D10BQ4KMP7 808 aaPredicted RBP18.08■□□□□ 0.48
TMEM260-215ENST00000557626 ARMC5Q96C12 935 aa18.08■□□□□ 0.48
TMEM260-215ENST00000557626 TMX4Q9H1E5 349 aaPredicted RBP18.08■□□□□ 0.48
TMEM260-215ENST00000557626 SULF1Q8IWU6 871 aa18.07■□□□□ 0.48
TMEM260-215ENST00000557626 SUPT20HQ8NEM7 779 aa18.07■□□□□ 0.48
TMEM260-215ENST00000557626 CDCA5Q96FF9 252 aa18.07■□□□□ 0.48
TMEM260-215ENST00000557626 CFHR5Q9BXR6 569 aa18.07■□□□□ 0.48
TMEM260-215ENST00000557626 R3HDMLQ9H3Y0 253 aa18.07■□□□□ 0.48
TMEM260-215ENST00000557626 ABCC12Q96J65 1359 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms