RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 KIF1AQ12756 1690 aa19.4■□□□□ 0.7
SHMT2-232ENST00000557487 DNM1Q05193 864 aaKnown RBP19.4■□□□□ 0.7
SHMT2-232ENST00000557487 KIAA1524Q8TCG1 905 aa19.4■□□□□ 0.7
SHMT2-232ENST00000557487 TTC12Q9H892 705 aaPredicted RBP19.4■□□□□ 0.7
SHMT2-232ENST00000557487 PHF8Q9UPP1 1060 aa19.4■□□□□ 0.7
SHMT2-232ENST00000557487 SPG7Q9UQ90 795 aa19.4■□□□□ 0.7
SHMT2-232ENST00000557487 PI4KAP2A4QPH2 592 aa19.39■□□□□ 0.7
SHMT2-232ENST00000557487 PI4KAP1Q8N8J0 262 aa19.39■□□□□ 0.7
SHMT2-232ENST00000557487 FAM200AQ8TCP9 573 aa19.39■□□□□ 0.7
SHMT2-232ENST00000557487 DDX17Q92841 729 aaKnown RBP19.39■□□□□ 0.7
SHMT2-232ENST00000557487 LRRC59Q96AG4 307 aaKnown RBP19.39■□□□□ 0.7
SHMT2-232ENST00000557487 IFIT2P09913 472 aaKnown RBP19.39■□□□□ 0.69
SHMT2-232ENST00000557487 GIMAP6Q6P9H5 292 aa19.39■□□□□ 0.69
SHMT2-232ENST00000557487 OVOS2A0A0G2JMS6 1433 aa19.38■□□□□ 0.69
SHMT2-232ENST00000557487 LARGE1O95461 756 aa19.38■□□□□ 0.69
SHMT2-232ENST00000557487 RNF20Q5VTR2 975 aa19.38■□□□□ 0.69
SHMT2-232ENST00000557487 PRPF40BQ6NWY9 871 aaKnown RBP19.38■□□□□ 0.69
SHMT2-232ENST00000557487 SCAND2PQ9GZW5 306 aaPredicted RBP19.38■□□□□ 0.69
SHMT2-232ENST00000557487 CHPF2Q9P2E5 772 aa19.38■□□□□ 0.69
SHMT2-232ENST00000557487 DBF4Q9UBU7 674 aaPredicted RBP19.38■□□□□ 0.69
SHMT2-232ENST00000557487 MAP3K11Q16584 847 aa19.37■□□□□ 0.69
SHMT2-232ENST00000557487 MAP4K1Q92918 833 aa19.37■□□□□ 0.69
SHMT2-232ENST00000557487 NCAPD2Q15021 1401 aa19.37■□□□□ 0.69
SHMT2-232ENST00000557487 ADCY9O60503 1353 aa19.37■□□□□ 0.69
SHMT2-232ENST00000557487 PTH1RQ03431 593 aa19.37■□□□□ 0.69
SHMT2-232ENST00000557487 ZNF830Q96NB3 372 aaPredicted RBP19.37■□□□□ 0.69
SHMT2-232ENST00000557487 RGPD8O14715 1765 aaPredicted RBP19.36■□□□□ 0.69
SHMT2-232ENST00000557487 PXDNQ92626 1479 aa19.36■□□□□ 0.69
SHMT2-232ENST00000557487 CAVIN2O95810 425 aa19.36■□□□□ 0.69
SHMT2-232ENST00000557487 EIF2S2P20042 333 aaKnown RBP19.36■□□□□ 0.69
SHMT2-232ENST00000557487 LARP1BQ659C4 914 aaKnown RBP19.36■□□□□ 0.69
SHMT2-232ENST00000557487 CREB3L3Q68CJ9 461 aa19.36■□□□□ 0.69
SHMT2-232ENST00000557487 NUP62CLQ9H1M0 184 aa19.36■□□□□ 0.69
SHMT2-232ENST00000557487 DDX19AQ9NUU7 478 aaKnown RBP19.36■□□□□ 0.69
SHMT2-232ENST00000557487 LMO7Q8WWI1 1683 aa19.36■□□□□ 0.69
SHMT2-232ENST00000557487 VPS37CA5D8V6 355 aaPredicted RBP19.35■□□□□ 0.69
SHMT2-232ENST00000557487 ME3Q16798 604 aa19.35■□□□□ 0.69
SHMT2-232ENST00000557487 IP6K1Q92551 441 aa19.35■□□□□ 0.69
SHMT2-232ENST00000557487 HMG20BQ9P0W2 317 aa19.35■□□□□ 0.69
SHMT2-232ENST00000557487 RBM8AQ9Y5S9 174 aaKnown RBP19.35■□□□□ 0.69
SHMT2-232ENST00000557487 ADCK5Q3MIX3 580 aa19.35■□□□□ 0.69
SHMT2-232ENST00000557487 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.35■□□□□ 0.69
SHMT2-232ENST00000557487 TSGA10IPQ3SY00 556 aa19.34■□□□□ 0.69
SHMT2-232ENST00000557487 AKAP4Q5JQC9 854 aa19.34■□□□□ 0.69
SHMT2-232ENST00000557487 C9orf78Q9NZ63 289 aaPredicted RBP19.34■□□□□ 0.69
SHMT2-232ENST00000557487 SPATA31A6Q5VVP1 1343 aa19.34■□□□□ 0.69
SHMT2-232ENST00000557487 ST3GAL1Q11201 340 aa19.33■□□□□ 0.69
SHMT2-232ENST00000557487 KSR2Q6VAB6 950 aa19.33■□□□□ 0.69
SHMT2-232ENST00000557487 ABTB2Q8N961 1025 aa19.33■□□□□ 0.69
SHMT2-232ENST00000557487 UTYO14607 1347 aa19.33■□□□□ 0.69
SHMT2-232ENST00000557487 KCNJ4P48050 445 aa19.33■□□□□ 0.68
SHMT2-232ENST00000557487 TEFQ10587 303 aa19.33■□□□□ 0.68
SHMT2-232ENST00000557487 RBM43Q6ZSC3 357 aaKnown RBP19.33■□□□□ 0.68
SHMT2-232ENST00000557487 GIGYF1O75420 1035 aaPredicted RBP19.32■□□□□ 0.68
SHMT2-232ENST00000557487 CPA1P15085 419 aa19.32■□□□□ 0.68
SHMT2-232ENST00000557487 TYRO3Q06418 890 aa19.32■□□□□ 0.68
SHMT2-232ENST00000557487 AMOTQ4VCS5 1084 aa19.32■□□□□ 0.68
SHMT2-232ENST00000557487 UTP14CQ5TAP6 766 aaKnown RBP19.32■□□□□ 0.68
SHMT2-232ENST00000557487 BLOC1S2Q6QNY1 142 aa19.32■□□□□ 0.68
SHMT2-232ENST00000557487 TTC6Q86TZ1 520 aa19.32■□□□□ 0.68
SHMT2-232ENST00000557487 TPCN1Q9ULQ1 816 aa19.32■□□□□ 0.68
SHMT2-232ENST00000557487 SLC27A2O14975 620 aa19.31■□□□□ 0.68
SHMT2-232ENST00000557487 KRT32Q14532 448 aa19.31■□□□□ 0.68
SHMT2-232ENST00000557487 PLEKHO1Q53GL0 409 aaPredicted RBP19.31■□□□□ 0.68
SHMT2-232ENST00000557487 KRT28Q7Z3Y7 464 aa19.31■□□□□ 0.68
SHMT2-232ENST00000557487 AACSQ86V21 672 aa19.31■□□□□ 0.68
SHMT2-232ENST00000557487 LARP6Q9BRS8 491 aaKnown RBP19.31■□□□□ 0.68
SHMT2-232ENST00000557487 KCNF1Q9H3M0 494 aa19.31■□□□□ 0.68
SHMT2-232ENST00000557487 PHRF1Q9P1Y6 1649 aaKnown RBP19.31■□□□□ 0.68
SHMT2-232ENST00000557487 GOLGA6L4A6NEF3 574 aa19.31■□□□□ 0.68
SHMT2-232ENST00000557487 BTBD11A6QL63 1104 aa19.31■□□□□ 0.68
SHMT2-232ENST00000557487 PLCB2Q00722 1185 aa19.31■□□□□ 0.68
SHMT2-232ENST00000557487 PSME1Q06323 249 aa19.31■□□□□ 0.68
SHMT2-232ENST00000557487 SYCP1Q15431 976 aa19.31■□□□□ 0.68
SHMT2-232ENST00000557487 ZNF710Q8N1W2 664 aa19.31■□□□□ 0.68
SHMT2-232ENST00000557487 LTV1Q96GA3 475 aaPredicted RBP19.31■□□□□ 0.68
SHMT2-232ENST00000557487 PRDM4Q9UKN5 801 aa19.31■□□□□ 0.68
SHMT2-232ENST00000557487 MRVI1Q9Y6F6 885 aa19.31■□□□□ 0.68
SHMT2-232ENST00000557487 AP5Z1O43299 807 aa19.3■□□□□ 0.68
SHMT2-232ENST00000557487 RPS6KB1P23443 525 aa19.3■□□□□ 0.68
SHMT2-232ENST00000557487 G3BP1Q13283 466 aaKnown RBP eCLIP19.3■□□□□ 0.682e-7■■■□□ 18
SHMT2-232ENST00000557487 LINS1Q8NG48 757 aa19.3■□□□□ 0.68
SHMT2-232ENST00000557487 TNMDQ9H2S6 317 aa19.3■□□□□ 0.68
SHMT2-232ENST00000557487 HEG1Q9ULI3 1381 aa19.3■□□□□ 0.68
SHMT2-232ENST00000557487 MAP3K2Q9Y2U5 619 aa19.29■□□□□ 0.68
SHMT2-232ENST00000557487 LTN1O94822 1766 aa19.29■□□□□ 0.68
SHMT2-232ENST00000557487 RFX7Q2KHR2 1363 aa19.29■□□□□ 0.68
SHMT2-232ENST00000557487 MED23Q9ULK4 1368 aa19.29■□□□□ 0.68
SHMT2-232ENST00000557487 NFAT5O94916 1531 aa19.29■□□□□ 0.68
SHMT2-232ENST00000557487 CTIFO43310 598 aaKnown RBP19.29■□□□□ 0.68
SHMT2-232ENST00000557487 DDX58O95786 925 aaKnown RBP19.29■□□□□ 0.68
SHMT2-232ENST00000557487 NMIQ13287 307 aaPredicted RBP19.29■□□□□ 0.68
SHMT2-232ENST00000557487 CLSTN2Q9H4D0 955 aa19.29■□□□□ 0.68
SHMT2-232ENST00000557487 SPATA31A3Q5VYP0 1347 aa19.29■□□□□ 0.68
SHMT2-232ENST00000557487 KCNH5Q8NCM2 988 aa19.28■□□□□ 0.68
SHMT2-232ENST00000557487 TDRD7Q8NHU6 1098 aaKnown RBP19.28■□□□□ 0.68
SHMT2-232ENST00000557487 SPATA32Q96LK8 384 aa19.28■□□□□ 0.68
SHMT2-232ENST00000557487 LGR6Q9HBX8 967 aa19.28■□□□□ 0.68
SHMT2-232ENST00000557487 PYCARDQ9ULZ3 195 aa19.28■□□□□ 0.68
SHMT2-232ENST00000557487 MRC1P22897 1456 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms