RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 SLC6A14Q9UN76 642 aa8.49□□□□□ -1.05
SCFD1-218ENST00000556256 AFF1P51825 1210 aaKnown RBP8.48□□□□□ -1.05
SCFD1-218ENST00000556256 CLDN10P78369 228 aa8.48□□□□□ -1.05
SCFD1-218ENST00000556256 ILDR2Q71H61 639 aa8.48□□□□□ -1.05
SCFD1-218ENST00000556256 TP53INP1Q96A56 240 aa8.48□□□□□ -1.05
SCFD1-218ENST00000556256 CHMP3Q9Y3E7 222 aa8.48□□□□□ -1.05
SCFD1-218ENST00000556256 SSBP4Q9BWG4 385 aaPredicted RBP8.47□□□□□ -1.05
SCFD1-218ENST00000556256 PSAPL1Q6NUJ1 521 aa8.46□□□□□ -1.06
SCFD1-218ENST00000556256 BTLAQ7Z6A9 289 aa8.46□□□□□ -1.06
SCFD1-218ENST00000556256 DMRTC2Q8IXT2 367 aaPredicted RBP8.46□□□□□ -1.06
SCFD1-218ENST00000556256 ATP1A2P50993 1020 aa8.45□□□□□ -1.06
SCFD1-218ENST00000556256 ALDH16A1Q8IZ83 802 aa8.45□□□□□ -1.06
SCFD1-218ENST00000556256 FMR1NBQ8N0W7 255 aaPredicted RBP8.45□□□□□ -1.06
SCFD1-218ENST00000556256 DNAJB12Q9NXW2 375 aaKnown RBP8.45□□□□□ -1.06
SCFD1-218ENST00000556256 USP21Q9UK80 565 aa8.45□□□□□ -1.06
SCFD1-218ENST00000556256 M0R2N6 131 aa8.44□□□□□ -1.06
SCFD1-218ENST00000556256 C21orf2O43822 256 aa8.44□□□□□ -1.06
SCFD1-218ENST00000556256 PPP1R12BO60237 982 aaPredicted RBP8.44□□□□□ -1.06
SCFD1-218ENST00000556256 PLEKHM2Q8IWE5 1019 aa8.44□□□□□ -1.06
SCFD1-218ENST00000556256 TSEN2Q8NCE0 465 aaKnown RBP8.44□□□□□ -1.06
SCFD1-218ENST00000556256 GSX2Q9BZM3 304 aa8.44□□□□□ -1.06
SCFD1-218ENST00000556256 EFCC1Q9HA90 598 aa8.44□□□□□ -1.06
SCFD1-218ENST00000556256 NAGPAQ9UK23 515 aa8.44□□□□□ -1.06
SCFD1-218ENST00000556256 USP17L3A6NCW0 530 aa8.43□□□□□ -1.06
SCFD1-218ENST00000556256 USP17L4A6NCW7 530 aa8.43□□□□□ -1.06
SCFD1-218ENST00000556256 RGS9O75916 674 aaPredicted RBP8.43□□□□□ -1.06
SCFD1-218ENST00000556256 USP17L2Q6R6M4 530 aa8.43□□□□□ -1.06
SCFD1-218ENST00000556256 USP17L1Q7RTZ2 530 aa8.43□□□□□ -1.06
SCFD1-218ENST00000556256 LARGE2Q8N3Y3 721 aa8.43□□□□□ -1.06
SCFD1-218ENST00000556256 OGFOD1Q8N543 542 aa8.43□□□□□ -1.06
SCFD1-218ENST00000556256 PALM3A6NDB9 673 aaPredicted RBP8.42□□□□□ -1.06
SCFD1-218ENST00000556256 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.42□□□□□ -1.06
SCFD1-218ENST00000556256 ATAD2Q6PL18 1390 aa8.41□□□□□ -1.06
SCFD1-218ENST00000556256 ADAMTS19Q8TE59 1207 aa8.41□□□□□ -1.06
SCFD1-218ENST00000556256 POM121Q96HA1 1249 aa8.41□□□□□ -1.06
SCFD1-218ENST00000556256 C2orf49Q9BVC5 232 aaPredicted RBP8.41□□□□□ -1.06
SCFD1-218ENST00000556256 DKK1O94907 266 aa8.4□□□□□ -1.06
SCFD1-218ENST00000556256 CCINQ13939 588 aa8.4□□□□□ -1.06
SCFD1-218ENST00000556256 WWC1Q8IX03 1113 aa8.4□□□□□ -1.06
SCFD1-218ENST00000556256 STAG2Q8N3U4 1231 aa8.4□□□□□ -1.06
SCFD1-218ENST00000556256 WFDC12Q8WWY7 111 aa8.4□□□□□ -1.06
SCFD1-218ENST00000556256 NGLY1Q96IV0 654 aa8.4□□□□□ -1.06
SCFD1-218ENST00000556256 PNMA5Q96PV4 448 aa8.4□□□□□ -1.06
SCFD1-218ENST00000556256 MKRN1Q9UHC7 482 aaKnown RBP8.4□□□□□ -1.06
SCFD1-218ENST00000556256 POM121CA8CG34 1229 aa8.39□□□□□ -1.07
SCFD1-218ENST00000556256 NFKB1P19838 968 aa8.39□□□□□ -1.07
SCFD1-218ENST00000556256 IREB2P48200 963 aaKnown RBP8.39□□□□□ -1.07
SCFD1-218ENST00000556256 HIF1AQ16665 826 aa8.39□□□□□ -1.07
SCFD1-218ENST00000556256 MSL1Q68DK7 614 aa8.39□□□□□ -1.07
SCFD1-218ENST00000556256 FAM35AQ86V20 835 aa8.39□□□□□ -1.07
SCFD1-218ENST00000556256 FBXO11Q86XK2 927 aa8.39□□□□□ -1.07
SCFD1-218ENST00000556256 SIX5Q8N196 739 aa8.39□□□□□ -1.07
SCFD1-218ENST00000556256 ZNF594Q96JF6 807 aaPredicted RBP8.39□□□□□ -1.07
SCFD1-218ENST00000556256 GRIK5Q16478 980 aa8.38□□□□□ -1.07
SCFD1-218ENST00000556256 SCG3Q8WXD2 468 aaKnown RBP8.38□□□□□ -1.07
SCFD1-218ENST00000556256 UCN2Q96RP3 112 aa8.38□□□□□ -1.07
SCFD1-218ENST00000556256 DMGDHQ9UI17 866 aaKnown RBP8.38□□□□□ -1.07
SCFD1-218ENST00000556256 ATP9BO43861 1147 aa8.37□□□□□ -1.07
SCFD1-218ENST00000556256 CPB1P15086 417 aa8.37□□□□□ -1.07
SCFD1-218ENST00000556256 NOS3P29474 1203 aa8.37□□□□□ -1.07
SCFD1-218ENST00000556256 HDGFL1Q5TGJ6 251 aa8.37□□□□□ -1.07
SCFD1-218ENST00000556256 IER5Q5VY09 327 aa8.37□□□□□ -1.07
SCFD1-218ENST00000556256 KRTAP19-1Q8IUB9 90 aa8.37□□□□□ -1.07
SCFD1-218ENST00000556256 DTWD1Q8N5C7 304 aa8.37□□□□□ -1.07
SCFD1-218ENST00000556256 GAS2L2Q8NHY3 880 aa8.37□□□□□ -1.07
SCFD1-218ENST00000556256 CHMP7Q8WUX9 453 aaPredicted RBP8.37□□□□□ -1.07
SCFD1-218ENST00000556256 RNF112Q9ULX5 631 aa8.37□□□□□ -1.07
SCFD1-218ENST00000556256 BCS1LQ9Y276 419 aa8.37□□□□□ -1.07
SCFD1-218ENST00000556256 GRNP28799 593 aaKnown RBP8.36□□□□□ -1.07
SCFD1-218ENST00000556256 RBM19Q9Y4C8 960 aaKnown RBP8.36□□□□□ -1.07
SCFD1-218ENST00000556256 ZBTB42B2RXF5 422 aa8.35□□□□□ -1.07
SCFD1-218ENST00000556256 TGFBR3LH3BV60 316 aa8.35□□□□□ -1.07
SCFD1-218ENST00000556256 MAP3K6O95382 1288 aa8.35□□□□□ -1.07
SCFD1-218ENST00000556256 PLAURQ03405 335 aa8.35□□□□□ -1.07
SCFD1-218ENST00000556256 PCSK7Q16549 785 aa8.35□□□□□ -1.07
SCFD1-218ENST00000556256 PERM1Q5SV97 790 aa8.35□□□□□ -1.07
SCFD1-218ENST00000556256 IGF2-ASQ6U949 168 aa8.35□□□□□ -1.07
SCFD1-218ENST00000556256 LPIN3Q9BQK8 851 aa8.35□□□□□ -1.07
SCFD1-218ENST00000556256 KRTAP9-9Q9BYP9 154 aa8.35□□□□□ -1.07
SCFD1-218ENST00000556256 KRTAP9-4Q9BYQ2 154 aa8.35□□□□□ -1.07
SCFD1-218ENST00000556256 FRRS1LQ9P0K9 344 aa8.35□□□□□ -1.07
SCFD1-218ENST00000556256 RTN1Q16799 776 aa8.34□□□□□ -1.07
SCFD1-218ENST00000556256 TPRNQ4KMQ1 711 aa8.34□□□□□ -1.07
SCFD1-218ENST00000556256 MEGF10Q96KG7 1140 aa8.34□□□□□ -1.07
SCFD1-218ENST00000556256 ZFATQ9P243 1243 aa8.34□□□□□ -1.07
SCFD1-218ENST00000556256 RAD21O60216 631 aa8.33□□□□□ -1.08
SCFD1-218ENST00000556256 WFDC8Q8IUA0 241 aa8.33□□□□□ -1.08
SCFD1-218ENST00000556256 GOLGA2P5Q9HBQ8 144 aa8.33□□□□□ -1.08
SCFD1-218ENST00000556256 DEAF1O75398 565 aaPredicted RBP8.32□□□□□ -1.08
SCFD1-218ENST00000556256 TARSP26639 723 aaKnown RBP8.32□□□□□ -1.08
SCFD1-218ENST00000556256 INPP5BP32019 993 aa8.32□□□□□ -1.08
SCFD1-218ENST00000556256 ELMSAN1Q6PJG2 1045 aa8.32□□□□□ -1.08
SCFD1-218ENST00000556256 PRR23CQ6ZRP0 262 aa8.32□□□□□ -1.08
SCFD1-218ENST00000556256 TRPM4Q8TD43 1214 aa8.32□□□□□ -1.08
SCFD1-218ENST00000556256 TTC9Q92623 222 aa8.32□□□□□ -1.08
SCFD1-218ENST00000556256 RASA1P20936 1047 aa8.31□□□□□ -1.08
SCFD1-218ENST00000556256 SEC13P55735 322 aa8.31□□□□□ -1.08
SCFD1-218ENST00000556256 MLLT1Q03111 559 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-218ENST00000556256 DHX32Q7L7V1 743 aaKnown RBP8.31□□□□□ -1.08
SCFD1-218ENST00000556256 KRT25Q7Z3Z0 450 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms