RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 HMMRO75330 724 aa14.02□□□□□ -0.17
SHMT2-220ENST00000555634 GPTP24298 496 aa14.02□□□□□ -0.17
SHMT2-220ENST00000555634 GTF2E1P29083 439 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-220ENST00000555634 GCKRQ14397 625 aa14.02□□□□□ -0.17
SHMT2-220ENST00000555634 CCDC136Q96JN2 1154 aa14.02□□□□□ -0.17
SHMT2-220ENST00000555634 PPP4R2Q9NY27 417 aa14.02□□□□□ -0.17
SHMT2-220ENST00000555634 TRIM28Q13263 835 aaKnown RBP14.01□□□□□ -0.17
SHMT2-220ENST00000555634 ISCA1Q9BUE6 129 aa14.01□□□□□ -0.17
SHMT2-220ENST00000555634 SPEF2Q9C093 1822 aa14.01□□□□□ -0.17
SHMT2-220ENST00000555634 IGKV5-2P06315 115 aa14□□□□□ -0.17
SHMT2-220ENST00000555634 HLFQ16534 295 aa14□□□□□ -0.17
SHMT2-220ENST00000555634 UBE3BQ7Z3V4 1068 aa14□□□□□ -0.17
SHMT2-220ENST00000555634 NLGN1Q8N2Q7 840 aa14□□□□□ -0.17
SHMT2-220ENST00000555634 MEIS3Q99687 375 aa14□□□□□ -0.17
SHMT2-220ENST00000555634 UTP14AQ9BVJ6 771 aaKnown RBP14□□□□□ -0.17
SHMT2-220ENST00000555634 SRP68Q9UHB9 627 aaKnown RBP14□□□□□ -0.17
SHMT2-220ENST00000555634 TRMT112Q9UI30 125 aaKnown RBP14□□□□□ -0.17
SHMT2-220ENST00000555634 NRXN2Q9P2S2 1712 aa13.99□□□□□ -0.17
SHMT2-220ENST00000555634 PNPLA7Q6ZV29 1317 aa13.99□□□□□ -0.17
SHMT2-220ENST00000555634 SH3TC1Q8TE82 1336 aa13.99□□□□□ -0.17
SHMT2-220ENST00000555634 ZBTB7BO15156 539 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-220ENST00000555634 PCCAP05165 728 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-220ENST00000555634 BICDL1Q6ZP65 573 aa13.99□□□□□ -0.17
SHMT2-220ENST00000555634 NLRP10Q86W26 655 aa13.99□□□□□ -0.17
SHMT2-220ENST00000555634 NBPF5PQ86XG9 351 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-220ENST00000555634 ZNF34Q8IZ26 560 aa13.99□□□□□ -0.17
SHMT2-220ENST00000555634 ZBTB38Q8NAP3 1195 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-220ENST00000555634 ZBTB40Q9NUA8 1239 aa13.99□□□□□ -0.17
SHMT2-220ENST00000555634 UTYO14607 1347 aa13.98□□□□□ -0.17
SHMT2-220ENST00000555634 CDHR2Q9BYE9 1310 aa13.98□□□□□ -0.17
SHMT2-220ENST00000555634 ST5P78524 1137 aa13.98□□□□□ -0.17
SHMT2-220ENST00000555634 RWDD1Q9H446 243 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-220ENST00000555634 ANO8Q9HCE9 1232 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-220ENST00000555634 ZBTB47Q9UFB7 747 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-220ENST00000555634 GYS1P13807 737 aa13.97□□□□□ -0.17
SHMT2-220ENST00000555634 TPTE2Q6XPS3 522 aa13.97□□□□□ -0.17
SHMT2-220ENST00000555634 RPAP2Q8IXW5 612 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-220ENST00000555634 CNBD1Q8NA66 436 aa13.97□□□□□ -0.17
SHMT2-220ENST00000555634 SLC16A10Q8TF71 515 aa13.97□□□□□ -0.17
SHMT2-220ENST00000555634 USP44Q9H0E7 712 aa13.97□□□□□ -0.17
SHMT2-220ENST00000555634 LRRFIP2Q9Y608 721 aaKnown RBP13.97□□□□□ -0.17
SHMT2-220ENST00000555634 UBN2Q6ZU65 1347 aa13.96□□□□□ -0.17
SHMT2-220ENST00000555634 CACNA1SQ13698 1873 aa13.96□□□□□ -0.17
SHMT2-220ENST00000555634 FAM177BA6PVY3 158 aa13.96□□□□□ -0.17
SHMT2-220ENST00000555634 TBC1D9BQ66K14 1250 aa13.96□□□□□ -0.17
SHMT2-220ENST00000555634 COL23A1Q86Y22 540 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-220ENST00000555634 C1orf115Q9H7X2 142 aa13.96□□□□□ -0.17
SHMT2-220ENST00000555634 PARP3Q9Y6F1 533 aa13.96□□□□□ -0.17
SHMT2-220ENST00000555634 NBPF7P0C2Y1 421 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-220ENST00000555634 AMIGO3Q86WK7 504 aa13.95□□□□□ -0.18
SHMT2-220ENST00000555634 CHMP3Q9Y3E7 222 aa13.95□□□□□ -0.18
SHMT2-220ENST00000555634 RIC1Q4ADV7 1423 aa13.95□□□□□ -0.18
SHMT2-220ENST00000555634 TNRC6CQ9HCJ0 1690 aaKnown RBP13.95□□□□□ -0.18
SHMT2-220ENST00000555634 H7C1W4 665 aa13.94□□□□□ -0.18
SHMT2-220ENST00000555634 IRS4O14654 1257 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-220ENST00000555634 NTSR2O95665 410 aa13.94□□□□□ -0.18
SHMT2-220ENST00000555634 NFIXQ14938 502 aa13.94□□□□□ -0.18
SHMT2-220ENST00000555634 TAF7LQ5H9L4 462 aa13.94□□□□□ -0.18
SHMT2-220ENST00000555634 RTL5Q5HYW3 569 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-220ENST00000555634 SMIM5Q71RC9 77 aa13.94□□□□□ -0.18
SHMT2-220ENST00000555634 DLEC1Q9Y238 1755 aa13.94□□□□□ -0.18
SHMT2-220ENST00000555634 ANKRD31Q8N7Z5 1873 aa13.93□□□□□ -0.18
SHMT2-220ENST00000555634 SRGAP3O43295 1099 aa13.93□□□□□ -0.18
SHMT2-220ENST00000555634 PDE8AO60658 829 aa13.93□□□□□ -0.18
SHMT2-220ENST00000555634 POLD1P28340 1107 aa13.93□□□□□ -0.18
SHMT2-220ENST00000555634 HSP90AB4PQ58FF6 505 aa13.93□□□□□ -0.18
SHMT2-220ENST00000555634 SUSD4Q5VX71 490 aa13.93□□□□□ -0.18
SHMT2-220ENST00000555634 CEP85Q6P2H3 762 aa13.93□□□□□ -0.18
SHMT2-220ENST00000555634 CENPQQ7L2Z9 268 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-220ENST00000555634 ANKRD44Q8N8A2 993 aa13.93□□□□□ -0.18
SHMT2-220ENST00000555634 FAM89AQ96GI7 184 aa13.93□□□□□ -0.18
SHMT2-220ENST00000555634 BICC1Q9H694 974 aaKnown RBP13.93□□□□□ -0.18
SHMT2-220ENST00000555634 BCL2L12Q9HB09 334 aa13.93□□□□□ -0.18
SHMT2-220ENST00000555634 CTSWP56202 376 aa13.92□□□□□ -0.18
SHMT2-220ENST00000555634 HDAC1Q13547 482 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-220ENST00000555634 CCDC57Q2TAC2 916 aa13.92□□□□□ -0.18
SHMT2-220ENST00000555634 CCDC152Q4G0S7 254 aa13.92□□□□□ -0.18
SHMT2-220ENST00000555634 SUCLG2Q96I99 432 aa13.92□□□□□ -0.18
SHMT2-220ENST00000555634 KIF13BQ9NQT8 1826 aa13.92□□□□□ -0.18
SHMT2-220ENST00000555634 MMP10P09238 476 aa13.91□□□□□ -0.18
SHMT2-220ENST00000555634 OS9Q13438 667 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-220ENST00000555634 MSL1Q68DK7 614 aa13.91□□□□□ -0.18
SHMT2-220ENST00000555634 GCC1Q96CN9 775 aa13.91□□□□□ -0.18
SHMT2-220ENST00000555634 PLA2G12BQ9BX93 195 aa13.91□□□□□ -0.18
SHMT2-220ENST00000555634 COL11A2P13942 1736 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-220ENST00000555634 SERPINB2P05120 415 aa13.9□□□□□ -0.18
SHMT2-220ENST00000555634 IFIT5Q13325 482 aaKnown RBP13.9□□□□□ -0.18
SHMT2-220ENST00000555634 MTX1Q13505 466 aa13.9□□□□□ -0.18
SHMT2-220ENST00000555634 R3HDM1Q15032 1099 aaKnown RBP13.9□□□□□ -0.18
SHMT2-220ENST00000555634 NUTM1Q86Y26 1132 aa13.9□□□□□ -0.18
SHMT2-220ENST00000555634 NLRP3Q96P20 1036 aa13.9□□□□□ -0.18
SHMT2-220ENST00000555634 MTFR1LQ9H019 292 aa13.9□□□□□ -0.18
SHMT2-220ENST00000555634 A0A1B0GUL6 1792 aa13.9□□□□□ -0.18
SHMT2-220ENST00000555634 LRP5O75197 1615 aa13.9□□□□□ -0.19
SHMT2-220ENST00000555634 ABCC12Q96J65 1359 aa13.89□□□□□ -0.19
SHMT2-220ENST00000555634 ANKRD18BA2A2Z9 1011 aa13.89□□□□□ -0.19
SHMT2-220ENST00000555634 POLRMTO00411 1230 aaKnown RBP13.89□□□□□ -0.19
SHMT2-220ENST00000555634 CASP7P55210 303 aa13.89□□□□□ -0.19
SHMT2-220ENST00000555634 ATP8B2P98198 1209 aa13.89□□□□□ -0.19
SHMT2-220ENST00000555634 RABL6Q3YEC7 729 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 303.7 ms