RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 LMBR1LQ6UX01 489 aa9.55□□□□□ -0.88
SYNE2-220ENST00000555612 PHAXQ9H814 394 aaKnown RBP9.55□□□□□ -0.88
SYNE2-220ENST00000555612 PTPRKQ15262 1439 aa9.55□□□□□ -0.88
SYNE2-220ENST00000555612 GCP02774 474 aa9.55□□□□□ -0.88
SYNE2-220ENST00000555612 ZGPATQ8N5A5 531 aaKnown RBP9.55□□□□□ -0.88
SYNE2-220ENST00000555612 SEPT7Q16181 437 aaKnown RBP9.54□□□□□ -0.88
SYNE2-220ENST00000555612 CCDC150Q8NCX0 1101 aa9.54□□□□□ -0.88
SYNE2-220ENST00000555612 CCNL1Q9UK58 526 aaPredicted RBP9.54□□□□□ -0.88
SYNE2-220ENST00000555612 ENOX2Q16206 610 aaKnown RBP9.54□□□□□ -0.88
SYNE2-220ENST00000555612 NAA16Q6N069 864 aaPredicted RBP9.54□□□□□ -0.88
SYNE2-220ENST00000555612 SLC4A4Q9Y6R1 1079 aa9.54□□□□□ -0.88
SYNE2-220ENST00000555612 ZMYM3Q14202 1370 aa9.54□□□□□ -0.88
SYNE2-220ENST00000555612 GPATCH8Q9UKJ3 1502 aaKnown RBP9.54□□□□□ -0.88
SYNE2-220ENST00000555612 ATP10BO94823 1461 aa9.54□□□□□ -0.88
SYNE2-220ENST00000555612 EIF4A2Q14240 407 aaKnown RBP9.54□□□□□ -0.88
SYNE2-220ENST00000555612 HSP90AA2PQ14568 343 aaPredicted RBP9.53□□□□□ -0.88
SYNE2-220ENST00000555612 C20orf194Q5TEA3 1177 aa9.53□□□□□ -0.88
SYNE2-220ENST00000555612 CKAP2LQ8IYA6 745 aa9.53□□□□□ -0.88
SYNE2-220ENST00000555612 JAG2Q9Y219 1238 aa9.53□□□□□ -0.88
SYNE2-220ENST00000555612 NKTRP30414 1462 aaKnown RBP9.53□□□□□ -0.88
SYNE2-220ENST00000555612 FAM98CQ17RN3 349 aaKnown RBP9.53□□□□□ -0.88
SYNE2-220ENST00000555612 USP16Q9Y5T5 823 aa9.53□□□□□ -0.88
SYNE2-220ENST00000555612 IARSP41252 1262 aaKnown RBP9.53□□□□□ -0.88
SYNE2-220ENST00000555612 HELBQ8NG08 1087 aaPredicted RBP9.53□□□□□ -0.88
SYNE2-220ENST00000555612 ZNF408Q9H9D4 720 aa9.53□□□□□ -0.88
SYNE2-220ENST00000555612 IDEP14735 1019 aa9.53□□□□□ -0.88
SYNE2-220ENST00000555612 BIN2Q9UBW5 565 aaPredicted RBP9.53□□□□□ -0.88
SYNE2-220ENST00000555612 UHRF1BP1Q6BDS2 1440 aa9.53□□□□□ -0.88
SYNE2-220ENST00000555612 CFAP100Q494V2 611 aa9.53□□□□□ -0.88
SYNE2-220ENST00000555612 KIAA1328Q86T90 577 aa9.53□□□□□ -0.88
SYNE2-220ENST00000555612 SYCP2Q9BX26 1530 aa9.53□□□□□ -0.88
SYNE2-220ENST00000555612 SMTNL1A8MU46 457 aa9.52□□□□□ -0.88
SYNE2-220ENST00000555612 AXDND1Q5T1B0 1012 aaPredicted RBP9.52□□□□□ -0.88
SYNE2-220ENST00000555612 EYA3Q99504 573 aa9.52□□□□□ -0.88
SYNE2-220ENST00000555612 PCDH11XQ9BZA7 1347 aa9.52□□□□□ -0.88
SYNE2-220ENST00000555612 PCDH11YQ9BZA8 1340 aa9.52□□□□□ -0.88
SYNE2-220ENST00000555612 FILIP1Q7Z7B0 1213 aa9.52□□□□□ -0.89
SYNE2-220ENST00000555612 NCOA7Q8NI08 942 aa9.52□□□□□ -0.89
SYNE2-220ENST00000555612 TAF4BQ92750 862 aa9.52□□□□□ -0.89
SYNE2-220ENST00000555612 IRS4O14654 1257 aaPredicted RBP9.52□□□□□ -0.89
SYNE2-220ENST00000555612 MTHFSDQ2M296 383 aaKnown RBP9.52□□□□□ -0.89
SYNE2-220ENST00000555612 FKBP15Q5T1M5 1219 aa9.52□□□□□ -0.89
SYNE2-220ENST00000555612 SLC26A6Q9BXS9 759 aa9.52□□□□□ -0.89
SYNE2-220ENST00000555612 METAP2P50579 478 aaKnown RBP eCLIP9.52□□□□□ -0.89
SYNE2-220ENST00000555612 ZNF397Q8NF99 534 aaPredicted RBP9.52□□□□□ -0.89
SYNE2-220ENST00000555612 CALML4Q96GE6 196 aa9.52□□□□□ -0.89
SYNE2-220ENST00000555612 TRAPPC8Q9Y2L5 1435 aa9.52□□□□□ -0.89
SYNE2-220ENST00000555612 CACNA2D4Q7Z3S7 1137 aa9.52□□□□□ -0.89
SYNE2-220ENST00000555612 BICD1Q96G01 975 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 SH2B1Q9NRF2 756 aaPredicted RBP9.51□□□□□ -0.89
SYNE2-220ENST00000555612 CFAP43Q8NDM7 1665 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 EPB41L2O43491 1005 aaKnown RBP9.51□□□□□ -0.89
SYNE2-220ENST00000555612 CNBD1Q8NA66 436 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 TCP11L1Q9NUJ3 509 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 HMGN5P82970 282 aaKnown RBP9.51□□□□□ -0.89
SYNE2-220ENST00000555612 JAKMIP3Q5VZ66 844 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 KSR2Q6VAB6 950 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 RBM17Q96I25 401 aaKnown RBP9.51□□□□□ -0.89
SYNE2-220ENST00000555612 DCAF5Q96JK2 942 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 CETN2P41208 172 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 SYCP3Q8IZU3 236 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 GRM8O00222 908 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 TCERG1LQ5VWI1 586 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 FLT4P35916 1363 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 KIF20AO95235 890 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 WTAPQ15007 396 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 MAP3K11Q16584 847 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 RHPN1Q8TCX5 695 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 CENPHQ9H3R5 247 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 USP21Q9UK80 565 aa9.51□□□□□ -0.89
SYNE2-220ENST00000555612 USP8P40818 1118 aa9.5□□□□□ -0.89
SYNE2-220ENST00000555612 TTC16Q8NEE8 873 aa9.5□□□□□ -0.89
SYNE2-220ENST00000555612 PANK2Q9BZ23 570 aa9.5□□□□□ -0.89
SYNE2-220ENST00000555612 RALGAPBQ86X10 1494 aa9.5□□□□□ -0.89
SYNE2-220ENST00000555612 RAPGEF6Q8TEU7 1601 aa9.5□□□□□ -0.89
SYNE2-220ENST00000555612 GOLGA6L10A6NI86 522 aa9.5□□□□□ -0.89
SYNE2-220ENST00000555612 TAX1BP1Q86VP1 789 aa9.5□□□□□ -0.89
SYNE2-220ENST00000555612 DUOX2Q9NRD8 1548 aa9.5□□□□□ -0.89
SYNE2-220ENST00000555612 PDIA4P13667 645 aaKnown RBP9.5□□□□□ -0.89
SYNE2-220ENST00000555612 SLC9C2Q5TAH2 1124 aa9.5□□□□□ -0.89
SYNE2-220ENST00000555612 ORAI2Q96SN7 254 aa9.5□□□□□ -0.89
SYNE2-220ENST00000555612 IL15P40933 162 aaPredicted RBP9.5□□□□□ -0.89
SYNE2-220ENST00000555612 IFIT1BQ5T764 474 aaKnown RBP9.5□□□□□ -0.89
SYNE2-220ENST00000555612 NEK1Q96PY6 1258 aa9.5□□□□□ -0.89
SYNE2-220ENST00000555612 ORC3Q9UBD5 711 aaPredicted RBP9.5□□□□□ -0.89
SYNE2-220ENST00000555612 LIMCH1Q9UPQ0 1083 aa9.5□□□□□ -0.89
SYNE2-220ENST00000555612 MACROD2A1Z1Q3 448 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 APBA3O96018 575 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 ANAPC15P60006 121 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 DDX17Q92841 729 aaKnown RBP9.49□□□□□ -0.89
SYNE2-220ENST00000555612 MEIS3Q99687 375 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 HEATR3Q7Z4Q2 680 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 CNNM3Q8NE01 707 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 DISP1Q96F81 1524 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 MAGEB6P1A0A0J9YX57 407 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 ZRSR2Q15696 482 aaKnown RBP9.49□□□□□ -0.89
SYNE2-220ENST00000555612 SMARCC2Q8TAQ2 1214 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 ESR2Q92731 530 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 FERMT2Q96AC1 680 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 PUF60Q9UHX1 559 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms