RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 ZBTB7BO15156 539 aaPredicted RBP10.65□□□□□ -0.7
VRK1-205ENST00000555402 POTEAQ6S8J7 498 aa10.65□□□□□ -0.7
VRK1-205ENST00000555402 NUDT8Q8WV74 236 aa10.65□□□□□ -0.7
VRK1-205ENST00000555402 SSBP4Q9BWG4 385 aaPredicted RBP10.65□□□□□ -0.7
VRK1-205ENST00000555402 TSPAN10Q9H1Z9 355 aaPredicted RBP10.65□□□□□ -0.7
VRK1-205ENST00000555402 USP17L5A8MUK1 530 aa10.64□□□□□ -0.71
VRK1-205ENST00000555402 USP21Q9UK80 565 aa10.64□□□□□ -0.71
VRK1-205ENST00000555402 AFF1P51825 1210 aaKnown RBP10.63□□□□□ -0.71
VRK1-205ENST00000555402 ILDR2Q71H61 639 aa10.63□□□□□ -0.71
VRK1-205ENST00000555402 TRIM50Q86XT4 487 aa10.63□□□□□ -0.71
VRK1-205ENST00000555402 FMR1NBQ8N0W7 255 aaPredicted RBP10.63□□□□□ -0.71
VRK1-205ENST00000555402 TPCN2Q8NHX9 752 aa10.63□□□□□ -0.71
VRK1-205ENST00000555402 CCDC102BQ68D86 513 aa10.62□□□□□ -0.71
VRK1-205ENST00000555402 DMRTC2Q8IXT2 367 aaPredicted RBP10.62□□□□□ -0.71
VRK1-205ENST00000555402 KIAA1024Q9UPX6 916 aa10.62□□□□□ -0.71
VRK1-205ENST00000555402 PSAPL1Q6NUJ1 521 aa10.61□□□□□ -0.71
VRK1-205ENST00000555402 EFCC1Q9HA90 598 aa10.61□□□□□ -0.71
VRK1-205ENST00000555402 MCM6Q14566 821 aa10.6□□□□□ -0.71
VRK1-205ENST00000555402 DNAJB12Q9NXW2 375 aaKnown RBP10.6□□□□□ -0.71
VRK1-205ENST00000555402 COG6Q9Y2V7 657 aa10.6□□□□□ -0.71
VRK1-205ENST00000555402 ATP1A2P50993 1020 aa10.59□□□□□ -0.71
VRK1-205ENST00000555402 BTLAQ7Z6A9 289 aa10.59□□□□□ -0.71
VRK1-205ENST00000555402 RGS9O75916 674 aaPredicted RBP10.58□□□□□ -0.72
VRK1-205ENST00000555402 CLDN10P78369 228 aa10.58□□□□□ -0.72
VRK1-205ENST00000555402 KRTAP19-1Q8IUB9 90 aa10.58□□□□□ -0.72
VRK1-205ENST00000555402 GSX2Q9BZM3 304 aa10.58□□□□□ -0.72
VRK1-205ENST00000555402 NAGPAQ9UK23 515 aa10.58□□□□□ -0.72
VRK1-205ENST00000555402 M0R2N6 131 aa10.57□□□□□ -0.72
VRK1-205ENST00000555402 ALDH16A1Q8IZ83 802 aa10.57□□□□□ -0.72
VRK1-205ENST00000555402 PPP1R12BO60237 982 aaPredicted RBP10.56□□□□□ -0.72
VRK1-205ENST00000555402 MSL1Q68DK7 614 aa10.56□□□□□ -0.72
VRK1-205ENST00000555402 WFDC12Q8WWY7 111 aa10.56□□□□□ -0.72
VRK1-205ENST00000555402 KRTAP9-9Q9BYP9 154 aa10.56□□□□□ -0.72
VRK1-205ENST00000555402 KRTAP9-4Q9BYQ2 154 aa10.56□□□□□ -0.72
VRK1-205ENST00000555402 RNF112Q9ULX5 631 aa10.56□□□□□ -0.72
VRK1-205ENST00000555402 PLEKHM2Q8IWE5 1019 aa10.55□□□□□ -0.72
VRK1-205ENST00000555402 PNMA5Q96PV4 448 aa10.55□□□□□ -0.72
VRK1-205ENST00000555402 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.55□□□□□ -0.72
VRK1-205ENST00000555402 BTBD11A6QL63 1104 aa10.54□□□□□ -0.72
VRK1-205ENST00000555402 C21orf2O43822 256 aa10.54□□□□□ -0.72
VRK1-205ENST00000555402 HIF1AQ16665 826 aa10.54□□□□□ -0.72
VRK1-205ENST00000555402 FBXO11Q86XK2 927 aa10.54□□□□□ -0.72
VRK1-205ENST00000555402 LARGE2Q8N3Y3 721 aa10.54□□□□□ -0.72
VRK1-205ENST00000555402 DTWD1Q8N5C7 304 aa10.54□□□□□ -0.72
VRK1-205ENST00000555402 TSEN2Q8NCE0 465 aaKnown RBP10.54□□□□□ -0.72
VRK1-205ENST00000555402 GOLGA2P5Q9HBQ8 144 aa10.54□□□□□ -0.72
VRK1-205ENST00000555402 IREB2P48200 963 aaKnown RBP10.53□□□□□ -0.72
VRK1-205ENST00000555402 CCINQ13939 588 aa10.53□□□□□ -0.72
VRK1-205ENST00000555402 USP17L3A6NCW0 530 aa10.52□□□□□ -0.73
VRK1-205ENST00000555402 USP17L4A6NCW7 530 aa10.52□□□□□ -0.73
VRK1-205ENST00000555402 PALM3A6NDB9 673 aaPredicted RBP10.52□□□□□ -0.73
VRK1-205ENST00000555402 NFKB1P19838 968 aa10.52□□□□□ -0.73
VRK1-205ENST00000555402 NOS3P29474 1203 aa10.52□□□□□ -0.73
VRK1-205ENST00000555402 USP17L2Q6R6M4 530 aa10.52□□□□□ -0.73
VRK1-205ENST00000555402 USP17L1Q7RTZ2 530 aa10.52□□□□□ -0.73
VRK1-205ENST00000555402 WWC1Q8IX03 1113 aa10.52□□□□□ -0.73
VRK1-205ENST00000555402 STAG2Q8N3U4 1231 aa10.52□□□□□ -0.73
VRK1-205ENST00000555402 OGFOD1Q8N543 542 aa10.52□□□□□ -0.73
VRK1-205ENST00000555402 C2orf49Q9BVC5 232 aaPredicted RBP10.52□□□□□ -0.73
VRK1-205ENST00000555402 ATAD2Q6PL18 1390 aa10.52□□□□□ -0.73
VRK1-205ENST00000555402 GRIK5Q16478 980 aa10.51□□□□□ -0.73
VRK1-205ENST00000555402 FAM35AQ86V20 835 aa10.51□□□□□ -0.73
VRK1-205ENST00000555402 NGLY1Q96IV0 654 aa10.5□□□□□ -0.73
VRK1-205ENST00000555402 CPB1P15086 417 aa10.49□□□□□ -0.73
VRK1-205ENST00000555402 PCSK7Q16549 785 aa10.49□□□□□ -0.73
VRK1-205ENST00000555402 IGF2-ASQ6U949 168 aa10.49□□□□□ -0.73
VRK1-205ENST00000555402 SIX5Q8N196 739 aa10.49□□□□□ -0.73
VRK1-205ENST00000555402 MKRN1Q9UHC7 482 aaKnown RBP10.49□□□□□ -0.73
VRK1-205ENST00000555402 DKK1O94907 266 aa10.48□□□□□ -0.73
VRK1-205ENST00000555402 IER5Q5VY09 327 aa10.48□□□□□ -0.73
VRK1-205ENST00000555402 MCTP1Q6DN14 999 aa10.48□□□□□ -0.73
VRK1-205ENST00000555402 GAS2L2Q8NHY3 880 aa10.48□□□□□ -0.73
VRK1-205ENST00000555402 SCG3Q8WXD2 468 aaKnown RBP10.48□□□□□ -0.73
VRK1-205ENST00000555402 MEGF10Q96KG7 1140 aa10.48□□□□□ -0.73
VRK1-205ENST00000555402 LPIN3Q9BQK8 851 aa10.48□□□□□ -0.73
VRK1-205ENST00000555402 FRRS1LQ9P0K9 344 aa10.48□□□□□ -0.73
VRK1-205ENST00000555402 DMGDHQ9UI17 866 aaKnown RBP10.48□□□□□ -0.73
VRK1-205ENST00000555402 PRR23CQ6ZRP0 262 aa10.47□□□□□ -0.73
VRK1-205ENST00000555402 WFDC8Q8IUA0 241 aa10.47□□□□□ -0.73
VRK1-205ENST00000555402 ADAMTS19Q8TE59 1207 aa10.47□□□□□ -0.73
VRK1-205ENST00000555402 CHMP7Q8WUX9 453 aaPredicted RBP10.47□□□□□ -0.73
VRK1-205ENST00000555402 RBM19Q9Y4C8 960 aaKnown RBP10.47□□□□□ -0.73
VRK1-205ENST00000555402 ZBTB42B2RXF5 422 aa10.46□□□□□ -0.73
VRK1-205ENST00000555402 SUPT5HO00267 1087 aaKnown RBP10.46□□□□□ -0.73
VRK1-205ENST00000555402 PLAURQ03405 335 aa10.46□□□□□ -0.73
VRK1-205ENST00000555402 PERM1Q5SV97 790 aa10.46□□□□□ -0.73
VRK1-205ENST00000555402 POM121Q96HA1 1249 aa10.46□□□□□ -0.73
VRK1-205ENST00000555402 ZNF594Q96JF6 807 aaPredicted RBP10.46□□□□□ -0.73
VRK1-205ENST00000555402 BCS1LQ9Y276 419 aa10.46□□□□□ -0.73
VRK1-205ENST00000555402 TGFBR3LH3BV60 316 aa10.45□□□□□ -0.74
VRK1-205ENST00000555402 ATP9BO43861 1147 aa10.45□□□□□ -0.74
VRK1-205ENST00000555402 MAP3K6O95382 1288 aa10.45□□□□□ -0.74
VRK1-205ENST00000555402 GRNP28799 593 aaKnown RBP10.45□□□□□ -0.74
VRK1-205ENST00000555402 UCN2Q96RP3 112 aa10.45□□□□□ -0.74
VRK1-205ENST00000555402 RTN1Q16799 776 aa10.44□□□□□ -0.74
VRK1-205ENST00000555402 ELMSAN1Q6PJG2 1045 aa10.44□□□□□ -0.74
VRK1-205ENST00000555402 TTC9Q92623 222 aa10.44□□□□□ -0.74
VRK1-205ENST00000555402 PCMTD2Q9NV79 361 aa10.44□□□□□ -0.74
VRK1-205ENST00000555402 ZFATQ9P243 1243 aa10.44□□□□□ -0.74
VRK1-205ENST00000555402 POM121CA8CG34 1229 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms