RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 CCT4P50991 539 aaKnown RBP13.58□□□□□ -0.24
TDP1-211ENST00000555178 NPM2Q86SE8 214 aaKnown RBP13.58□□□□□ -0.24
TDP1-211ENST00000555178 KAZALD1Q96I82 304 aa13.58□□□□□ -0.24
TDP1-211ENST00000555178 DDX60Q8IY21 1712 aaKnown RBP13.58□□□□□ -0.24
TDP1-211ENST00000555178 A0A087WZG4 1122 aa13.58□□□□□ -0.24
TDP1-211ENST00000555178 PSDA5PKW4 1024 aaPredicted RBP13.58□□□□□ -0.24
TDP1-211ENST00000555178 ZPR1O75312 459 aa13.58□□□□□ -0.24
TDP1-211ENST00000555178 EPHA10Q5JZY3 1008 aa13.58□□□□□ -0.24
TDP1-211ENST00000555178 NIP7Q9Y221 180 aaKnown RBP eCLIP13.58□□□□□ -0.24
TDP1-211ENST00000555178 SRCAPQ6ZRS2 3230 aa13.57□□□□□ -0.24
TDP1-211ENST00000555178 CASP7P55210 303 aa13.57□□□□□ -0.24
TDP1-211ENST00000555178 FAM89AQ96GI7 184 aa13.57□□□□□ -0.24
TDP1-211ENST00000555178 NFIXQ14938 502 aa13.56□□□□□ -0.24
TDP1-211ENST00000555178 R3HDM1Q15032 1099 aaKnown RBP13.56□□□□□ -0.24
TDP1-211ENST00000555178 NUTM1Q86Y26 1132 aa13.56□□□□□ -0.24
TDP1-211ENST00000555178 LAMB2P55268 1798 aa13.56□□□□□ -0.24
TDP1-211ENST00000555178 ADRA2BP18089 450 aa13.56□□□□□ -0.24
TDP1-211ENST00000555178 DDR1Q08345 913 aa13.56□□□□□ -0.24
TDP1-211ENST00000555178 NEXNQ0ZGT2 675 aa13.56□□□□□ -0.24
TDP1-211ENST00000555178 UBE3BQ7Z3V4 1068 aa13.56□□□□□ -0.24
TDP1-211ENST00000555178 SUCLG2Q96I99 432 aa13.56□□□□□ -0.24
TDP1-211ENST00000555178 GOLGB1Q14789 3259 aaKnown RBP13.55□□□□□ -0.24
TDP1-211ENST00000555178 COL4A1P02462 1669 aa13.55□□□□□ -0.24
TDP1-211ENST00000555178 ALDH1L1O75891 902 aa13.55□□□□□ -0.24
TDP1-211ENST00000555178 CWC25Q9NXE8 425 aaPredicted RBP13.55□□□□□ -0.24
TDP1-211ENST00000555178 LRRFIP2Q9Y608 721 aaKnown RBP13.55□□□□□ -0.24
TDP1-211ENST00000555178 MYH3P11055 1940 aa13.55□□□□□ -0.24
TDP1-211ENST00000555178 H7C1W4 665 aa13.55□□□□□ -0.24
TDP1-211ENST00000555178 GRM8O00222 908 aa13.55□□□□□ -0.24
TDP1-211ENST00000555178 IGHDP01880 384 aa13.55□□□□□ -0.24
TDP1-211ENST00000555178 TRIM28Q13263 835 aaKnown RBP13.55□□□□□ -0.24
TDP1-211ENST00000555178 SIRT2Q8IXJ6 389 aa13.55□□□□□ -0.24
TDP1-211ENST00000555178 TNRC6CQ9HCJ0 1690 aaKnown RBP13.54□□□□□ -0.24
TDP1-211ENST00000555178 NTSR2O95665 410 aa13.54□□□□□ -0.24
TDP1-211ENST00000555178 TM4SF1P30408 202 aa13.54□□□□□ -0.24
TDP1-211ENST00000555178 CLEC4GQ6UXB4 293 aa13.54□□□□□ -0.24
TDP1-211ENST00000555178 CCDC191Q8NCU4 936 aa13.54□□□□□ -0.24
TDP1-211ENST00000555178 C9orf78Q9NZ63 289 aaPredicted RBP13.54□□□□□ -0.24
TDP1-211ENST00000555178 UTYO14607 1347 aa13.54□□□□□ -0.24
TDP1-211ENST00000555178 ANKRD31Q8N7Z5 1873 aa13.54□□□□□ -0.24
TDP1-211ENST00000555178 C3orf67Q6ZVT6 689 aa13.54□□□□□ -0.24
TDP1-211ENST00000555178 HCLS1P14317 486 aaPredicted RBP13.52□□□□□ -0.24
TDP1-211ENST00000555178 ERFEQ4G0M1 354 aa13.52□□□□□ -0.24
TDP1-211ENST00000555178 SKAP1Q86WV1 359 aa13.52□□□□□ -0.24
TDP1-211ENST00000555178 TRMT112Q9UI30 125 aaKnown RBP13.52□□□□□ -0.24
TDP1-211ENST00000555178 CARMIL3Q8ND23 1372 aa13.52□□□□□ -0.24
TDP1-211ENST00000555178 ABCC12Q96J65 1359 aa13.52□□□□□ -0.24
TDP1-211ENST00000555178 ZBTB7AO95365 584 aa13.52□□□□□ -0.25
TDP1-211ENST00000555178 ANKRD44Q8N8A2 993 aa13.52□□□□□ -0.25
TDP1-211ENST00000555178 CCDC85AQ96PX6 553 aaPredicted RBP13.52□□□□□ -0.25
TDP1-211ENST00000555178 BICC1Q9H694 974 aaKnown RBP13.52□□□□□ -0.25
TDP1-211ENST00000555178 ZNF652Q9Y2D9 606 aa13.52□□□□□ -0.25
TDP1-211ENST00000555178 NRXN2Q9P2S2 1712 aa13.52□□□□□ -0.25
TDP1-211ENST00000555178 KDM2BQ8NHM5 1336 aa13.52□□□□□ -0.25
TDP1-211ENST00000555178 PNMA6EA0A0J9YXQ4 647 aa13.51□□□□□ -0.25
TDP1-211ENST00000555178 POLRMTO00411 1230 aaKnown RBP13.51□□□□□ -0.25
TDP1-211ENST00000555178 UBTFL1P0CB47 393 aaPredicted RBP13.51□□□□□ -0.25
TDP1-211ENST00000555178 FOXO4P98177 505 aa13.51□□□□□ -0.25
TDP1-211ENST00000555178 HSP90AB3PQ58FF7 597 aa13.51□□□□□ -0.25
TDP1-211ENST00000555178 SETDB2Q96T68 719 aa13.51□□□□□ -0.25
TDP1-211ENST00000555178 SPEF2Q9C093 1822 aa13.51□□□□□ -0.25
TDP1-211ENST00000555178 PCCAP05165 728 aaPredicted RBP13.51□□□□□ -0.25
TDP1-211ENST00000555178 ZBTB38Q8NAP3 1195 aaPredicted RBP13.51□□□□□ -0.25
TDP1-211ENST00000555178 MMP10P09238 476 aa13.5□□□□□ -0.25
TDP1-211ENST00000555178 CEP85Q6P2H3 762 aa13.5□□□□□ -0.25
TDP1-211ENST00000555178 SLC51AQ86UW1 340 aa13.5□□□□□ -0.25
TDP1-211ENST00000555178 FLAD1Q8NFF5 587 aa13.49□□□□□ -0.25
TDP1-211ENST00000555178 UTP14AQ9BVJ6 771 aaKnown RBP13.49□□□□□ -0.25
TDP1-211ENST00000555178 ATF5Q9Y2D1 282 aaPredicted RBP13.49□□□□□ -0.25
TDP1-211ENST00000555178 IRS4O14654 1257 aaPredicted RBP13.49□□□□□ -0.25
TDP1-211ENST00000555178 GNAI2P04899 355 aa13.49□□□□□ -0.25
TDP1-211ENST00000555178 SERPINB2P05120 415 aa13.49□□□□□ -0.25
TDP1-211ENST00000555178 GNAI3P08754 354 aa13.49□□□□□ -0.25
TDP1-211ENST00000555178 AAMPQ13685 434 aa13.49□□□□□ -0.25
TDP1-211ENST00000555178 PRR5LQ6MZQ0 368 aa13.49□□□□□ -0.25
TDP1-211ENST00000555178 KLHDC4Q8TBB5 520 aa13.49□□□□□ -0.25
TDP1-211ENST00000555178 NBPF5PQ86XG9 351 aaPredicted RBP13.48□□□□□ -0.25
TDP1-211ENST00000555178 PARP10Q53GL7 1025 aa13.48□□□□□ -0.25
TDP1-211ENST00000555178 LMBR1LQ6UX01 489 aa13.47□□□□□ -0.25
TDP1-211ENST00000555178 PPP1R42Q7Z4L9 355 aa13.47□□□□□ -0.25
TDP1-211ENST00000555178 NLGN1Q8N2Q7 840 aa13.47□□□□□ -0.25
TDP1-211ENST00000555178 CHMP4BQ9H444 224 aaKnown RBP13.47□□□□□ -0.25
TDP1-211ENST00000555178 SH3TC1Q8TE82 1336 aa13.47□□□□□ -0.25
TDP1-211ENST00000555178 CACNA1SQ13698 1873 aa13.47□□□□□ -0.25
TDP1-211ENST00000555178 IBTKQ9P2D0 1353 aaPredicted RBP13.47□□□□□ -0.25
TDP1-211ENST00000555178 COL11A2P13942 1736 aaPredicted RBP13.47□□□□□ -0.25
TDP1-211ENST00000555178 RGL2O15211 777 aa13.47□□□□□ -0.25
TDP1-211ENST00000555178 PA2G4Q9UQ80 394 aaKnown RBP13.47□□□□□ -0.25
TDP1-211ENST00000555178 CDHR2Q9BYE9 1310 aa13.46□□□□□ -0.25
TDP1-211ENST00000555178 ATP8B2P98198 1209 aa13.45□□□□□ -0.26
TDP1-211ENST00000555178 HDAC1Q13547 482 aaPredicted RBP13.45□□□□□ -0.26
TDP1-211ENST00000555178 TTLL11Q8NHH1 800 aa13.45□□□□□ -0.26
TDP1-211ENST00000555178 ZNF594Q96JF6 807 aaPredicted RBP13.45□□□□□ -0.26
TDP1-211ENST00000555178 SEC31BQ9NQW1 1179 aa13.45□□□□□ -0.26
TDP1-211ENST00000555178 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.45□□□□□ -0.26
TDP1-211ENST00000555178 FAM161AQ3B820 660 aa13.45□□□□□ -0.26
TDP1-211ENST00000555178 RABL6Q3YEC7 729 aaPredicted RBP13.45□□□□□ -0.26
TDP1-211ENST00000555178 CENPQQ7L2Z9 268 aaPredicted RBP13.45□□□□□ -0.26
TDP1-211ENST00000555178 GREM2Q9H772 168 aa13.45□□□□□ -0.26
TDP1-211ENST00000555178 HMGB2P26583 209 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms