RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 H0YIN7 160 aa18.21■□□□□ 0.51
SHMT2-217ENST00000555116 FLIIQ13045 1269 aa18.21■□□□□ 0.51
SHMT2-217ENST00000555116 TRIM28Q13263 835 aaKnown RBP18.21■□□□□ 0.51
SHMT2-217ENST00000555116 KSR2Q6VAB6 950 aa18.21■□□□□ 0.51
SHMT2-217ENST00000555116 UTP14AQ9BVJ6 771 aaKnown RBP18.21■□□□□ 0.51
SHMT2-217ENST00000555116 RIC1Q4ADV7 1423 aa18.2■□□□□ 0.5
SHMT2-217ENST00000555116 KLRG2A4D1S0 409 aaPredicted RBP18.2■□□□□ 0.5
SHMT2-217ENST00000555116 GTF2E1P29083 439 aaPredicted RBP18.2■□□□□ 0.5
SHMT2-217ENST00000555116 METTL22Q9BUU2 404 aaPredicted RBP18.2■□□□□ 0.5
SHMT2-217ENST00000555116 MAP3K2Q9Y2U5 619 aa18.2■□□□□ 0.5
SHMT2-217ENST00000555116 LAMB2P55268 1798 aa18.2■□□□□ 0.5
SHMT2-217ENST00000555116 PI4KAP2A4QPH2 592 aa18.2■□□□□ 0.5
SHMT2-217ENST00000555116 PI4KAP1Q8N8J0 262 aa18.2■□□□□ 0.5
SHMT2-217ENST00000555116 RNF123Q5XPI4 1314 aa18.19■□□□□ 0.5
SHMT2-217ENST00000555116 MYD88Q99836 296 aa18.19■□□□□ 0.5
SHMT2-217ENST00000555116 BCS1LQ9Y276 419 aa18.19■□□□□ 0.5
SHMT2-217ENST00000555116 DDX60Q8IY21 1712 aaKnown RBP18.19■□□□□ 0.5
SHMT2-217ENST00000555116 ZBED9Q6R2W3 1325 aa18.18■□□□□ 0.5
SHMT2-217ENST00000555116 GRIN3BO60391 1043 aa18.18■□□□□ 0.5
SHMT2-217ENST00000555116 SRGNP10124 158 aa18.18■□□□□ 0.5
SHMT2-217ENST00000555116 DALRD3Q5D0E6 543 aaKnown RBP18.18■□□□□ 0.5
SHMT2-217ENST00000555116 SLC10A5Q5PT55 438 aa18.18■□□□□ 0.5
SHMT2-217ENST00000555116 SLX4Q8IY92 1834 aa18.18■□□□□ 0.5
SHMT2-217ENST00000555116 GTF3C3Q9Y5Q9 886 aa18.18■□□□□ 0.5
SHMT2-217ENST00000555116 FKBP5Q13451 457 aaPredicted RBP18.17■□□□□ 0.5
SHMT2-217ENST00000555116 STYK1Q6J9G0 422 aa18.17■□□□□ 0.5
SHMT2-217ENST00000555116 SYNE4Q8N205 404 aa18.17■□□□□ 0.5
SHMT2-217ENST00000555116 ZNF428Q96B54 188 aa18.17■□□□□ 0.5
SHMT2-217ENST00000555116 TRMT112Q9UI30 125 aaKnown RBP18.17■□□□□ 0.5
SHMT2-217ENST00000555116 GOLGB1Q14789 3259 aaKnown RBP18.16■□□□□ 0.5
SHMT2-217ENST00000555116 CT47B1P0C2W7 299 aaPredicted RBP18.16■□□□□ 0.5
SHMT2-217ENST00000555116 MRPL50Q8N5N7 158 aaKnown RBP18.16■□□□□ 0.5
SHMT2-217ENST00000555116 TTLL6Q8N841 843 aa18.16■□□□□ 0.5
SHMT2-217ENST00000555116 SSH1Q8WYL5 1049 aa18.16■□□□□ 0.5
SHMT2-217ENST00000555116 ZNF622Q969S3 477 aaKnown RBP eCLIP18.16■□□□□ 0.5
SHMT2-217ENST00000555116 SH3TC1Q8TE82 1336 aa18.16■□□□□ 0.5
SHMT2-217ENST00000555116 IGKV5-2P06315 115 aa18.16■□□□□ 0.5
SHMT2-217ENST00000555116 CRY2Q49AN0 593 aa18.16■□□□□ 0.5
SHMT2-217ENST00000555116 MASTLQ96GX5 879 aa18.16■□□□□ 0.5
SHMT2-217ENST00000555116 C3orf67Q6ZVT6 689 aa18.15■□□□□ 0.5
SHMT2-217ENST00000555116 CCDC191Q8NCU4 936 aa18.15■□□□□ 0.5
SHMT2-217ENST00000555116 NPR1P16066 1061 aa18.14■□□□□ 0.49
SHMT2-217ENST00000555116 ALDH1L2Q3SY69 923 aa18.14■□□□□ 0.49
SHMT2-217ENST00000555116 DNAAF4Q8WXU2 420 aa18.14■□□□□ 0.49
SHMT2-217ENST00000555116 FAM89AQ96GI7 184 aa18.14■□□□□ 0.49
SHMT2-217ENST00000555116 CWC25Q9NXE8 425 aaPredicted RBP18.14■□□□□ 0.49
SHMT2-217ENST00000555116 HCLS1P14317 486 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-217ENST00000555116 NEXNQ0ZGT2 675 aa18.13■□□□□ 0.49
SHMT2-217ENST00000555116 CNKSR1Q969H4 720 aa18.13■□□□□ 0.49
SHMT2-217ENST00000555116 NEURL1BA8MQ27 555 aa18.12■□□□□ 0.49
SHMT2-217ENST00000555116 F6X3S4 739 aa18.12■□□□□ 0.49
SHMT2-217ENST00000555116 NLRP3Q96P20 1036 aa18.12■□□□□ 0.49
SHMT2-217ENST00000555116 SBF1O95248 1867 aa18.12■□□□□ 0.49
SHMT2-217ENST00000555116 TAF1P21675 1872 aa18.12■□□□□ 0.49
SHMT2-217ENST00000555116 PCCAP05165 728 aaPredicted RBP18.12■□□□□ 0.49
SHMT2-217ENST00000555116 CWF19L2Q2TBE0 894 aaKnown RBP18.12■□□□□ 0.49
SHMT2-217ENST00000555116 ZBTB38Q8NAP3 1195 aaPredicted RBP18.12■□□□□ 0.49
SHMT2-217ENST00000555116 BCL2L13Q9BXK5 485 aa18.12■□□□□ 0.49
SHMT2-217ENST00000555116 FER1L6Q2WGJ9 1857 aa18.11■□□□□ 0.49
SHMT2-217ENST00000555116 MYH3P11055 1940 aa18.11■□□□□ 0.49
SHMT2-217ENST00000555116 UTRNP46939 3433 aa18.11■□□□□ 0.49
SHMT2-217ENST00000555116 HOXA10P31260 410 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-217ENST00000555116 CCDC88AQ3V6T2 1871 aa18.1■□□□□ 0.49
SHMT2-217ENST00000555116 RTL5Q5HYW3 569 aaPredicted RBP18.1■□□□□ 0.49
SHMT2-217ENST00000555116 PRPF40BQ6NWY9 871 aaKnown RBP18.1■□□□□ 0.49
SHMT2-217ENST00000555116 LINS1Q8NG48 757 aa18.1■□□□□ 0.49
SHMT2-217ENST00000555116 SMC4Q9NTJ3 1288 aa18.1■□□□□ 0.49
SHMT2-217ENST00000555116 IRS4O14654 1257 aaPredicted RBP18.09■□□□□ 0.49
SHMT2-217ENST00000555116 RARSP54136 660 aaKnown RBP18.09■□□□□ 0.49
SHMT2-217ENST00000555116 ARHGAP27Q6ZUM4 889 aa18.09■□□□□ 0.49
SHMT2-217ENST00000555116 JARID2Q92833 1246 aaPredicted RBP18.09■□□□□ 0.49
SHMT2-217ENST00000555116 BRPF1P55201 1214 aaPredicted RBP18.09■□□□□ 0.49
SHMT2-217ENST00000555116 BEND3Q5T5X7 828 aa18.09■□□□□ 0.49
SHMT2-217ENST00000555116 RPGRQ92834 1020 aaKnown RBP18.09■□□□□ 0.49
SHMT2-217ENST00000555116 CRAMP1Q96RY5 1269 aa18.09■□□□□ 0.49
SHMT2-217ENST00000555116 PTPRCP08575 1304 aa18.09■□□□□ 0.49
SHMT2-217ENST00000555116 ALDH1B1P30837 517 aa18.08■□□□□ 0.49
SHMT2-217ENST00000555116 GCKRQ14397 625 aa18.08■□□□□ 0.49
SHMT2-217ENST00000555116 C7orf43Q8WVR3 580 aa18.08■□□□□ 0.49
SHMT2-217ENST00000555116 C21orf2O43822 256 aa18.07■□□□□ 0.48
SHMT2-217ENST00000555116 RBM17Q96I25 401 aaKnown RBP18.07■□□□□ 0.48
SHMT2-217ENST00000555116 CDHR2Q9BYE9 1310 aa18.07■□□□□ 0.48
SHMT2-217ENST00000555116 H7C1W4 665 aa18.07■□□□□ 0.48
SHMT2-217ENST00000555116 SF3B3Q15393 1217 aaKnown RBP18.07■□□□□ 0.48
SHMT2-217ENST00000555116 ZNF219Q9P2Y4 722 aaPredicted RBP18.07■□□□□ 0.48
SHMT2-217ENST00000555116 YY1P25490 414 aa18.05■□□□□ 0.48
SHMT2-217ENST00000555116 CASP7P55210 303 aa18.05■□□□□ 0.48
SHMT2-217ENST00000555116 SLC4A10Q6U841 1118 aa18.05■□□□□ 0.48
SHMT2-217ENST00000555116 ABCC4O15439 1325 aa18.05■□□□□ 0.48
SHMT2-217ENST00000555116 COL4A1P02462 1669 aa18.04■□□□□ 0.48
SHMT2-217ENST00000555116 NFKBIEO00221 500 aa18.04■□□□□ 0.48
SHMT2-217ENST00000555116 PDE8AO60658 829 aa18.04■□□□□ 0.48
SHMT2-217ENST00000555116 HSP90B1P14625 803 aaKnown RBP18.04■□□□□ 0.48
SHMT2-217ENST00000555116 UBE3BQ7Z3V4 1068 aa18.04■□□□□ 0.48
SHMT2-217ENST00000555116 NOB1Q9ULX3 412 aaKnown RBP18.04■□□□□ 0.48
SHMT2-217ENST00000555116 DICER1Q9UPY3 1922 aaKnown RBP18.04■□□□□ 0.48
SHMT2-217ENST00000555116 ALDH1L1O75891 902 aa18.03■□□□□ 0.48
SHMT2-217ENST00000555116 OLFM4Q6UX06 510 aa18.03■□□□□ 0.48
SHMT2-217ENST00000555116 SNED1Q8TER0 1413 aa18.03■□□□□ 0.48
SHMT2-217ENST00000555116 RASSF7Q02833 373 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms