RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 NYXQ9GZU5 481 aa18.2■□□□□ 0.5
SHMT2-210ENST00000553950 ZBTB40Q9NUA8 1239 aa18.2■□□□□ 0.5
SHMT2-210ENST00000553950 NIP7Q9Y221 180 aaKnown RBP eCLIP18.2■□□□□ 0.5
SHMT2-210ENST00000553950 ATP5J2-PTCD1G3V325 749 aa18.19■□□□□ 0.5
SHMT2-210ENST00000553950 NLRP10Q86W26 655 aa18.19■□□□□ 0.5
SHMT2-210ENST00000553950 DDX60Q8IY21 1712 aaKnown RBP18.19■□□□□ 0.5
SHMT2-210ENST00000553950 MEIS3Q99687 375 aa18.19■□□□□ 0.5
SHMT2-210ENST00000553950 NRXN2Q9P2S2 1712 aa18.18■□□□□ 0.5
SHMT2-210ENST00000553950 MSH5O43196 834 aa18.18■□□□□ 0.5
SHMT2-210ENST00000553950 PCCAP05165 728 aaPredicted RBP18.18■□□□□ 0.5
SHMT2-210ENST00000553950 AMIGO3Q86WK7 504 aa18.18■□□□□ 0.5
SHMT2-210ENST00000553950 ZBTB38Q8NAP3 1195 aaPredicted RBP18.18■□□□□ 0.5
SHMT2-210ENST00000553950 SETDB2Q96T68 719 aa18.18■□□□□ 0.5
SHMT2-210ENST00000553950 USP44Q9H0E7 712 aa18.18■□□□□ 0.5
SHMT2-210ENST00000553950 SRP68Q9UHB9 627 aaKnown RBP18.18■□□□□ 0.5
SHMT2-210ENST00000553950 CDHR2Q9BYE9 1310 aa18.18■□□□□ 0.5
SHMT2-210ENST00000553950 GYS1P13807 737 aa18.17■□□□□ 0.5
SHMT2-210ENST00000553950 GPTP24298 496 aa18.17■□□□□ 0.5
SHMT2-210ENST00000553950 NLGN1Q8N2Q7 840 aa18.17■□□□□ 0.5
SHMT2-210ENST00000553950 PPP4R2Q9NY27 417 aa18.17■□□□□ 0.5
SHMT2-210ENST00000553950 GTF3C3Q9Y5Q9 886 aa18.17■□□□□ 0.5
SHMT2-210ENST00000553950 UBN2Q6ZU65 1347 aa18.17■□□□□ 0.5
SHMT2-210ENST00000553950 RIC1Q4ADV7 1423 aa18.16■□□□□ 0.5
SHMT2-210ENST00000553950 UBE3BQ7Z3V4 1068 aa18.16■□□□□ 0.5
SHMT2-210ENST00000553950 COL23A1Q86Y22 540 aaPredicted RBP18.16■□□□□ 0.5
SHMT2-210ENST00000553950 SLC16A10Q8TF71 515 aa18.16■□□□□ 0.5
SHMT2-210ENST00000553950 UTP14AQ9BVJ6 771 aaKnown RBP18.16■□□□□ 0.5
SHMT2-210ENST00000553950 BCL2L12Q9HB09 334 aa18.16■□□□□ 0.5
SHMT2-210ENST00000553950 SH3TC1Q8TE82 1336 aa18.16■□□□□ 0.5
SHMT2-210ENST00000553950 HMMRO75330 724 aa18.15■□□□□ 0.5
SHMT2-210ENST00000553950 TRMT112Q9UI30 125 aaKnown RBP18.15■□□□□ 0.5
SHMT2-210ENST00000553950 H7C1W4 665 aa18.14■□□□□ 0.49
SHMT2-210ENST00000553950 TBC1D9BQ66K14 1250 aa18.14■□□□□ 0.49
SHMT2-210ENST00000553950 RPAP2Q8IXW5 612 aaPredicted RBP18.14■□□□□ 0.49
SHMT2-210ENST00000553950 NPHP1O15259 732 aa18.13■□□□□ 0.49
SHMT2-210ENST00000553950 NTSR2O95665 410 aa18.13■□□□□ 0.49
SHMT2-210ENST00000553950 NBPF7P0C2Y1 421 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-210ENST00000553950 NBPF5PQ86XG9 351 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-210ENST00000553950 TPTE2Q6XPS3 522 aa18.12■□□□□ 0.49
SHMT2-210ENST00000553950 CCDC136Q96JN2 1154 aa18.12■□□□□ 0.49
SHMT2-210ENST00000553950 PLA2G12BQ9BX93 195 aa18.12■□□□□ 0.49
SHMT2-210ENST00000553950 LRRFIP2Q9Y608 721 aaKnown RBP18.12■□□□□ 0.49
SHMT2-210ENST00000553950 GTF2E1P29083 439 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-210ENST00000553950 CASP7P55210 303 aa18.11■□□□□ 0.49
SHMT2-210ENST00000553950 MTX1Q13505 466 aa18.11■□□□□ 0.49
SHMT2-210ENST00000553950 NFIXQ14938 502 aa18.11■□□□□ 0.49
SHMT2-210ENST00000553950 SUSD4Q5VX71 490 aa18.11■□□□□ 0.49
SHMT2-210ENST00000553950 BICDL1Q6ZP65 573 aa18.11■□□□□ 0.49
SHMT2-210ENST00000553950 SMIM5Q71RC9 77 aa18.11■□□□□ 0.49
SHMT2-210ENST00000553950 ANKRD44Q8N8A2 993 aa18.11■□□□□ 0.49
SHMT2-210ENST00000553950 CNBD1Q8NA66 436 aa18.11■□□□□ 0.49
SHMT2-210ENST00000553950 ST5P78524 1137 aa18.1■□□□□ 0.49
SHMT2-210ENST00000553950 HDAC1Q13547 482 aaPredicted RBP18.1■□□□□ 0.49
SHMT2-210ENST00000553950 CEP85Q6P2H3 762 aa18.1■□□□□ 0.49
SHMT2-210ENST00000553950 RWDD1Q9H446 243 aaPredicted RBP18.1■□□□□ 0.49
SHMT2-210ENST00000553950 C1orf115Q9H7X2 142 aa18.1■□□□□ 0.49
SHMT2-210ENST00000553950 IRS4O14654 1257 aaPredicted RBP18.09■□□□□ 0.49
SHMT2-210ENST00000553950 PDE8AO60658 829 aa18.09■□□□□ 0.49
SHMT2-210ENST00000553950 RABL6Q3YEC7 729 aaPredicted RBP18.09■□□□□ 0.49
SHMT2-210ENST00000553950 FAM89AQ96GI7 184 aa18.09■□□□□ 0.49
SHMT2-210ENST00000553950 SUCLG2Q96I99 432 aa18.09■□□□□ 0.49
SHMT2-210ENST00000553950 PARP3Q9Y6F1 533 aa18.09■□□□□ 0.49
SHMT2-210ENST00000553950 TM4SF1P30408 202 aa18.08■□□□□ 0.48
SHMT2-210ENST00000553950 BICC1Q9H694 974 aaKnown RBP18.08■□□□□ 0.48
SHMT2-210ENST00000553950 TNRC6CQ9HCJ0 1690 aaKnown RBP18.08■□□□□ 0.48
SHMT2-210ENST00000553950 RTL9Q8NET4 1388 aa18.07■□□□□ 0.48
SHMT2-210ENST00000553950 POLRMTO00411 1230 aaKnown RBP18.07■□□□□ 0.48
SHMT2-210ENST00000553950 CTSWP56202 376 aa18.07■□□□□ 0.48
SHMT2-210ENST00000553950 CENPQQ7L2Z9 268 aaPredicted RBP18.07■□□□□ 0.48
SHMT2-210ENST00000553950 LRP5O75197 1615 aa18.07■□□□□ 0.48
SHMT2-210ENST00000553950 ANKRD31Q8N7Z5 1873 aa18.07■□□□□ 0.48
SHMT2-210ENST00000553950 SOCS7O14512 581 aa18.06■□□□□ 0.48
SHMT2-210ENST00000553950 SERPINB2P05120 415 aa18.06■□□□□ 0.48
SHMT2-210ENST00000553950 ATP8B2P98198 1209 aa18.06■□□□□ 0.48
SHMT2-210ENST00000553950 MTFR1LQ9H019 292 aa18.06■□□□□ 0.48
SHMT2-210ENST00000553950 PCDHB15Q9Y5E8 787 aa18.06■□□□□ 0.48
SHMT2-210ENST00000553950 KIF13BQ9NQT8 1826 aa18.06■□□□□ 0.48
SHMT2-210ENST00000553950 ABCC12Q96J65 1359 aa18.05■□□□□ 0.48
SHMT2-210ENST00000553950 FAM177BA6PVY3 158 aa18.05■□□□□ 0.48
SHMT2-210ENST00000553950 SRGAP3O43295 1099 aa18.05■□□□□ 0.48
SHMT2-210ENST00000553950 MMP10P09238 476 aa18.05■□□□□ 0.48
SHMT2-210ENST00000553950 CCDC152Q4G0S7 254 aa18.05■□□□□ 0.48
SHMT2-210ENST00000553950 RTL5Q5HYW3 569 aaPredicted RBP18.05■□□□□ 0.48
SHMT2-210ENST00000553950 SLC10A5Q5PT55 438 aa18.05■□□□□ 0.48
SHMT2-210ENST00000553950 SPEF2Q9C093 1822 aa18.05■□□□□ 0.48
SHMT2-210ENST00000553950 DLEC1Q9Y238 1755 aa18.04■□□□□ 0.48
SHMT2-210ENST00000553950 DDR1Q08345 913 aa18.04■□□□□ 0.48
SHMT2-210ENST00000553950 HSP90AB4PQ58FF6 505 aa18.04■□□□□ 0.48
SHMT2-210ENST00000553950 SSH3Q8TE77 659 aa18.04■□□□□ 0.48
SHMT2-210ENST00000553950 GCC1Q96CN9 775 aa18.04■□□□□ 0.48
SHMT2-210ENST00000553950 KAZALD1Q96I82 304 aa18.04■□□□□ 0.48
SHMT2-210ENST00000553950 FOXO4P98177 505 aa18.03■□□□□ 0.48
SHMT2-210ENST00000553950 R3HDM1Q15032 1099 aaKnown RBP18.03■□□□□ 0.48
SHMT2-210ENST00000553950 ERFEQ4G0M1 354 aa18.03■□□□□ 0.48
SHMT2-210ENST00000553950 PRR5LQ6MZQ0 368 aa18.03■□□□□ 0.48
SHMT2-210ENST00000553950 LMBR1LQ6UX01 489 aa18.03■□□□□ 0.48
SHMT2-210ENST00000553950 NUTM1Q86Y26 1132 aa18.03■□□□□ 0.48
SHMT2-210ENST00000553950 NLRP3Q96P20 1036 aa18.03■□□□□ 0.48
SHMT2-210ENST00000553950 PDZRN3Q9UPQ7 1066 aa18.03■□□□□ 0.48
SHMT2-210ENST00000553950 CHMP3Q9Y3E7 222 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms