RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 CCDC191Q8NCU4 936 aa26.85■■□□□ 1.89
VPS29-206ENST00000549578 CWC25Q9NXE8 425 aaPredicted RBP26.85■■□□□ 1.89
VPS29-206ENST00000549578 N4BP2Q86UW6 1770 aaPredicted RBP26.84■■□□□ 1.89
VPS29-206ENST00000549578 CENPBP07199 599 aaPredicted RBP26.84■■□□□ 1.89
VPS29-206ENST00000549578 NTSR2O95665 410 aa26.83■■□□□ 1.89
VPS29-206ENST00000549578 CCT4P50991 539 aaKnown RBP26.83■■□□□ 1.89
VPS29-206ENST00000549578 PPP1R42Q7Z4L9 355 aa26.83■■□□□ 1.89
VPS29-206ENST00000549578 PANK1Q8TE04 598 aa26.83■■□□□ 1.89
VPS29-206ENST00000549578 UTP14AQ9BVJ6 771 aaKnown RBP26.83■■□□□ 1.89
VPS29-206ENST00000549578 SUPT16HQ9Y5B9 1047 aaKnown RBP26.83■■□□□ 1.89
VPS29-206ENST00000549578 GCKRQ14397 625 aa26.82■■□□□ 1.88
VPS29-206ENST00000549578 NUTM1Q86Y26 1132 aa26.82■■□□□ 1.88
VPS29-206ENST00000549578 CCDC24Q8N4L8 307 aa26.82■■□□□ 1.88
VPS29-206ENST00000549578 TMEM57Q8N5G2 664 aa26.82■■□□□ 1.88
VPS29-206ENST00000549578 NRXN2Q9P2S2 1712 aa26.82■■□□□ 1.88
VPS29-206ENST00000549578 NPHP1O15259 732 aa26.81■■□□□ 1.88
VPS29-206ENST00000549578 ALDH1L1O75891 902 aa26.81■■□□□ 1.88
VPS29-206ENST00000549578 RTL5Q5HYW3 569 aaPredicted RBP26.81■■□□□ 1.88
VPS29-206ENST00000549578 C20orf194Q5TEA3 1177 aa26.81■■□□□ 1.88
VPS29-206ENST00000549578 CNBD1Q8NA66 436 aa26.81■■□□□ 1.88
VPS29-206ENST00000549578 TRMT112Q9UI30 125 aaKnown RBP26.81■■□□□ 1.88
VPS29-206ENST00000549578 INTS3Q68E01 1043 aaKnown RBP26.8■■□□□ 1.88
VPS29-206ENST00000549578 PRR5LQ6MZQ0 368 aa26.8■■□□□ 1.88
VPS29-206ENST00000549578 TPTE2Q6XPS3 522 aa26.8■■□□□ 1.88
VPS29-206ENST00000549578 JARID2Q92833 1246 aaPredicted RBP26.8■■□□□ 1.88
VPS29-206ENST00000549578 NYXQ9GZU5 481 aa26.8■■□□□ 1.88
VPS29-206ENST00000549578 IBTKQ9P2D0 1353 aaPredicted RBP26.8■■□□□ 1.88
VPS29-206ENST00000549578 SYNE4Q8N205 404 aa26.8■■□□□ 1.88
VPS29-206ENST00000549578 FAM89AQ96GI7 184 aa26.8■■□□□ 1.88
VPS29-206ENST00000549578 GTF2E1P29083 439 aaPredicted RBP26.79■■□□□ 1.88
VPS29-206ENST00000549578 ERFEQ4G0M1 354 aa26.79■■□□□ 1.88
VPS29-206ENST00000549578 RNF123Q5XPI4 1314 aa26.78■■□□□ 1.88
VPS29-206ENST00000549578 MS4A1P11836 297 aa26.78■■□□□ 1.88
VPS29-206ENST00000549578 ABCC12Q96J65 1359 aa26.78■■□□□ 1.88
VPS29-206ENST00000549578 SH3TC1Q8TE82 1336 aa26.77■■□□□ 1.88
VPS29-206ENST00000549578 ZBTB38Q8NAP3 1195 aaPredicted RBP26.77■■□□□ 1.88
VPS29-206ENST00000549578 SRCAPQ6ZRS2 3230 aa26.77■■□□□ 1.88
VPS29-206ENST00000549578 PCCAP05165 728 aaPredicted RBP26.76■■□□□ 1.87
VPS29-206ENST00000549578 UBE3BQ7Z3V4 1068 aa26.76■■□□□ 1.87
VPS29-206ENST00000549578 ITPRIPQ8IWB1 547 aa26.76■■□□□ 1.87
VPS29-206ENST00000549578 GRM8O00222 908 aa26.75■■□□□ 1.87
VPS29-206ENST00000549578 ST5P78524 1137 aa26.75■■□□□ 1.87
VPS29-206ENST00000549578 PDE3AQ14432 1141 aa26.75■■□□□ 1.87
VPS29-206ENST00000549578 C9orf78Q9NZ63 289 aaPredicted RBP26.75■■□□□ 1.87
VPS29-206ENST00000549578 H7C1W4 665 aa26.75■■□□□ 1.87
VPS29-206ENST00000549578 USP44Q9H0E7 712 aa26.74■■□□□ 1.87
VPS29-206ENST00000549578 COG6Q9Y2V7 657 aa26.74■■□□□ 1.87
VPS29-206ENST00000549578 C10orf71Q711Q0 1435 aa26.74■■□□□ 1.87
VPS29-206ENST00000549578 NBPF7P0C2Y1 421 aaPredicted RBP26.73■■□□□ 1.87
VPS29-206ENST00000549578 HCLS1P14317 486 aaPredicted RBP26.73■■□□□ 1.87
VPS29-206ENST00000549578 CASP7P55210 303 aa26.73■■□□□ 1.87
VPS29-206ENST00000549578 ANKRD31Q8N7Z5 1873 aa26.72■■□□□ 1.87
VPS29-206ENST00000549578 IRS4O14654 1257 aaPredicted RBP26.71■■□□□ 1.87
VPS29-206ENST00000549578 MVPQ14764 893 aaKnown RBP26.71■■□□□ 1.87
VPS29-206ENST00000549578 KLHL34Q8N239 644 aa26.71■■□□□ 1.87
VPS29-206ENST00000549578 MEIS3Q99687 375 aa26.71■■□□□ 1.87
VPS29-206ENST00000549578 PPP1R1BQ9UD71 204 aaPredicted RBP26.71■■□□□ 1.87
VPS29-206ENST00000549578 TNRC6CQ9HCJ0 1690 aaKnown RBP26.71■■□□□ 1.87
VPS29-206ENST00000549578 DDX60Q8IY21 1712 aaKnown RBP26.71■■□□□ 1.87
VPS29-206ENST00000549578 UTYO14607 1347 aa26.7■■□□□ 1.87
VPS29-206ENST00000549578 CDHR2Q9BYE9 1310 aa26.7■■□□□ 1.87
VPS29-206ENST00000549578 LRP5O75197 1615 aa26.7■■□□□ 1.86
VPS29-206ENST00000549578 SLC10A5Q5PT55 438 aa26.7■■□□□ 1.86
VPS29-206ENST00000549578 BRIP1Q9BX63 1249 aa26.7■■□□□ 1.86
VPS29-206ENST00000549578 LAMB2P55268 1798 aa26.69■■□□□ 1.86
VPS29-206ENST00000549578 KIF13BQ9NQT8 1826 aa26.69■■□□□ 1.86
VPS29-206ENST00000549578 C3orf67Q6ZVT6 689 aa26.69■■□□□ 1.86
VPS29-206ENST00000549578 RIC1Q4ADV7 1423 aa26.68■■□□□ 1.86
VPS29-206ENST00000549578 UBTFL1P0CB47 393 aaPredicted RBP26.66■■□□□ 1.86
VPS29-206ENST00000549578 SUCLG2Q96I99 432 aa26.66■■□□□ 1.86
VPS29-206ENST00000549578 ZBTB7BO15156 539 aaPredicted RBP26.65■■□□□ 1.86
VPS29-206ENST00000549578 NLRP3Q96P20 1036 aa26.65■■□□□ 1.86
VPS29-206ENST00000549578 PDE8AO60658 829 aa26.65■■□□□ 1.86
VPS29-206ENST00000549578 GNAI3P08754 354 aa26.65■■□□□ 1.86
VPS29-206ENST00000549578 KAZALD1Q96I82 304 aa26.65■■□□□ 1.86
VPS29-206ENST00000549578 FHDC1Q9C0D6 1143 aaPredicted RBP26.65■■□□□ 1.86
VPS29-206ENST00000549578 DDX19BQ9UMR2 479 aa26.65■■□□□ 1.86
VPS29-206ENST00000549578 CD2APQ9Y5K6 639 aa26.65■■□□□ 1.86
VPS29-206ENST00000549578 HSP90B1P14625 803 aaKnown RBP26.64■■□□□ 1.85
VPS29-206ENST00000549578 PDE6BP35913 854 aa26.64■■□□□ 1.85
VPS29-206ENST00000549578 EPHA10Q5JZY3 1008 aa26.64■■□□□ 1.85
VPS29-206ENST00000549578 CRBNQ96SW2 442 aa26.64■■□□□ 1.85
VPS29-206ENST00000549578 IRX6P78412 446 aaPredicted RBP26.63■■□□□ 1.85
VPS29-206ENST00000549578 PLA2G12BQ9BX93 195 aa26.63■■□□□ 1.85
VPS29-206ENST00000549578 COL11A2P13942 1736 aaPredicted RBP26.63■■□□□ 1.85
VPS29-206ENST00000549578 CHRNA5P30532 468 aa26.62■■□□□ 1.85
VPS29-206ENST00000549578 C2CD5Q86YS7 1000 aa26.62■■□□□ 1.85
VPS29-206ENST00000549578 LRRFIP2Q9Y608 721 aaKnown RBP26.62■■□□□ 1.85
VPS29-206ENST00000549578 MYH3P11055 1940 aa26.62■■□□□ 1.85
VPS29-206ENST00000549578 KLRG2A4D1S0 409 aaPredicted RBP26.61■■□□□ 1.85
VPS29-206ENST00000549578 CTSWP56202 376 aa26.61■■□□□ 1.85
VPS29-206ENST00000549578 FOXO4P98177 505 aa26.61■■□□□ 1.85
VPS29-206ENST00000549578 CCDC85AQ96PX6 553 aaPredicted RBP26.61■■□□□ 1.85
VPS29-206ENST00000549578 KIAA1551Q9HCM1 1747 aa26.61■■□□□ 1.85
VPS29-206ENST00000549578 CRY2Q49AN0 593 aa26.6■■□□□ 1.85
VPS29-206ENST00000549578 BICC1Q9H694 974 aaKnown RBP26.6■■□□□ 1.85
VPS29-206ENST00000549578 C1orf115Q9H7X2 142 aa26.6■■□□□ 1.85
VPS29-206ENST00000549578 A0A0G2JLW4 131 aa26.6■■□□□ 1.85
VPS29-206ENST00000549578 NLGN2Q8NFZ4 835 aa26.6■■□□□ 1.85
VPS29-206ENST00000549578 H0YIN7 160 aa26.59■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms