RNA–Protein interactions for RNA: ENST00000549271.1

DDX54-206, Transcript of DEAD-box helicase 54, humanhuman

TSL 2

Gene DDX54, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-206ENST00000549271 TEFQ10587 303 aa16.38■□□□□ 0.21
DDX54-206ENST00000549271 ZNF652Q9Y2D9 606 aa16.38■□□□□ 0.21
DDX54-206ENST00000549271 COL3A1P02461 1466 aaPredicted RBP16.37■□□□□ 0.21
DDX54-206ENST00000549271 CELF2O95319 508 aaKnown RBP16.37■□□□□ 0.21
DDX54-206ENST00000549271 CRY2Q49AN0 593 aa16.37■□□□□ 0.21
DDX54-206ENST00000549271 PRPF38BQ5VTL8 546 aaKnown RBP16.37■□□□□ 0.21
DDX54-206ENST00000549271 CC2D2BQ6DHV5 1058 aa16.37■□□□□ 0.21
DDX54-206ENST00000549271 CIAPIN1Q6FI81 312 aa16.37■□□□□ 0.21
DDX54-206ENST00000549271 PIP4K2AP48426 406 aaPredicted RBP16.36■□□□□ 0.21
DDX54-206ENST00000549271 CC2D1BQ5T0F9 858 aaKnown RBP16.36■□□□□ 0.21
DDX54-206ENST00000549271 GPRC5DQ9NZD1 345 aa16.36■□□□□ 0.21
DDX54-206ENST00000549271 NIP7Q9Y221 180 aaKnown RBP eCLIP16.36■□□□□ 0.21
DDX54-206ENST00000549271 USP16Q9Y5T5 823 aa16.36■□□□□ 0.21
DDX54-206ENST00000549271 GNAT3A8MTJ3 354 aa16.35■□□□□ 0.21
DDX54-206ENST00000549271 KCNQ3O43525 872 aa16.35■□□□□ 0.21
DDX54-206ENST00000549271 SOX10P56693 466 aa16.35■□□□□ 0.21
DDX54-206ENST00000549271 ADARB2Q9NS39 739 aaKnown RBP16.35■□□□□ 0.21
DDX54-206ENST00000549271 PGAP2Q9UHJ9 254 aa16.35■□□□□ 0.21
DDX54-206ENST00000549271 CEMIPQ8WUJ3 1361 aa16.35■□□□□ 0.21
DDX54-206ENST00000549271 GRIPAP1Q4V328 841 aa16.34■□□□□ 0.21
DDX54-206ENST00000549271 LARGE2Q8N3Y3 721 aa16.34■□□□□ 0.21
DDX54-206ENST00000549271 ZIC5Q96T25 663 aa16.34■□□□□ 0.21
DDX54-206ENST00000549271 NOGQ13253 232 aa16.33■□□□□ 0.2
DDX54-206ENST00000549271 GLIS2Q9BZE0 524 aaPredicted RBP16.33■□□□□ 0.2
DDX54-206ENST00000549271 PRAMEF22A3QJZ6 481 aa16.32■□□□□ 0.2
DDX54-206ENST00000549271 FAM177BA6PVY3 158 aa16.32■□□□□ 0.2
DDX54-206ENST00000549271 HOXA10P31260 410 aaPredicted RBP16.32■□□□□ 0.2
DDX54-206ENST00000549271 NUP98P52948 1817 aa16.32■□□□□ 0.2
DDX54-206ENST00000549271 GAS2L2Q8NHY3 880 aa16.32■□□□□ 0.2
DDX54-206ENST00000549271 ABCC12Q96J65 1359 aa16.32■□□□□ 0.2
DDX54-206ENST00000549271 RIC1Q4ADV7 1423 aa16.31■□□□□ 0.2
DDX54-206ENST00000549271 BTBD11A6QL63 1104 aa16.31■□□□□ 0.2
DDX54-206ENST00000549271 NBPF26B4DH59 902 aa16.31■□□□□ 0.2
DDX54-206ENST00000549271 NBPF10Q6P3W6 841 aaKnown RBP16.31■□□□□ 0.2
DDX54-206ENST00000549271 SLC51AQ86UW1 340 aa16.31■□□□□ 0.2
DDX54-206ENST00000549271 NIM1KQ8IY84 436 aa16.31■□□□□ 0.2
DDX54-206ENST00000549271 NBPF15Q8N660 670 aa16.31■□□□□ 0.2
DDX54-206ENST00000549271 AKAP11Q9UKA4 1901 aa16.31■□□□□ 0.2
DDX54-206ENST00000549271 GTF2E1P29083 439 aaPredicted RBP16.3■□□□□ 0.2
DDX54-206ENST00000549271 HLFQ16534 295 aa16.3■□□□□ 0.2
DDX54-206ENST00000549271 SAGE1Q9NXZ1 904 aa16.3■□□□□ 0.2
DDX54-206ENST00000549271 U2SURPO15042 1029 aaKnown RBP16.29■□□□□ 0.2
DDX54-206ENST00000549271 ZC3H15Q8WU90 426 aaKnown RBP16.29■□□□□ 0.2
DDX54-206ENST00000549271 ZNF408Q9H9D4 720 aa16.29■□□□□ 0.2
DDX54-206ENST00000549271 FAM155AB1AL88 458 aaPredicted RBP16.28■□□□□ 0.2
DDX54-206ENST00000549271 SNRPA1P09661 255 aaKnown RBP16.28■□□□□ 0.2
DDX54-206ENST00000549271 GMPSP49915 693 aaPredicted RBP16.28■□□□□ 0.2
DDX54-206ENST00000549271 HIRAP54198 1017 aaPredicted RBP16.28■□□□□ 0.2
DDX54-206ENST00000549271 CXCL9Q07325 125 aa16.28■□□□□ 0.2
DDX54-206ENST00000549271 RPGRQ92834 1020 aaKnown RBP16.28■□□□□ 0.2
DDX54-206ENST00000549271 VPS33BQ9H267 617 aa16.28■□□□□ 0.2
DDX54-206ENST00000549271 CDHR2Q9BYE9 1310 aa16.27■□□□□ 0.2
DDX54-206ENST00000549271 PPEF1O14829 653 aaPredicted RBP16.27■□□□□ 0.2
DDX54-206ENST00000549271 PPIP5K2O43314 1243 aa16.27■□□□□ 0.2
DDX54-206ENST00000549271 HUNKP57058 714 aa16.27■□□□□ 0.2
DDX54-206ENST00000549271 AOC3Q16853 763 aa16.27■□□□□ 0.2
DDX54-206ENST00000549271 CDC37L1Q7L3B6 337 aa16.27■□□□□ 0.2
DDX54-206ENST00000549271 NUTM1Q86Y26 1132 aa16.27■□□□□ 0.2
DDX54-206ENST00000549271 CRAMP1Q96RY5 1269 aa16.27■□□□□ 0.2
DDX54-206ENST00000549271 NYXQ9GZU5 481 aa16.27■□□□□ 0.2
DDX54-206ENST00000549271 LAMB4A4D0S4 1761 aa16.26■□□□□ 0.19
DDX54-206ENST00000549271 POLR2AP24928 1970 aaKnown RBP16.26■□□□□ 0.19
DDX54-206ENST00000549271 CNGB1Q14028 1251 aaPredicted RBP16.26■□□□□ 0.19
DDX54-206ENST00000549271 ZNRF3Q9ULT6 936 aa16.26■□□□□ 0.19
DDX54-206ENST00000549271 TRPM4Q8TD43 1214 aa16.25■□□□□ 0.19
DDX54-206ENST00000549271 CFAP53Q96M91 514 aa16.25■□□□□ 0.19
DDX54-206ENST00000549271 RSPH6AQ9H0K4 717 aa16.25■□□□□ 0.19
DDX54-206ENST00000549271 IBTKQ9P2D0 1353 aaPredicted RBP16.25■□□□□ 0.19
DDX54-206ENST00000549271 RGMBQ6NW40 437 aa16.24■□□□□ 0.19
DDX54-206ENST00000549271 RBM17Q96I25 401 aaKnown RBP16.24■□□□□ 0.19
DDX54-206ENST00000549271 PHACTR3Q96KR7 559 aa16.24■□□□□ 0.19
DDX54-206ENST00000549271 RNF186Q9NXI6 227 aa16.24■□□□□ 0.19
DDX54-206ENST00000549271 TCERG1O14776 1098 aaKnown RBP16.23■□□□□ 0.19
DDX54-206ENST00000549271 PRKAR2BP31323 418 aa16.23■□□□□ 0.19
DDX54-206ENST00000549271 KIF23Q02241 960 aaPredicted RBP16.23■□□□□ 0.19
DDX54-206ENST00000549271 CTU1Q7Z7A3 348 aaKnown RBP16.23■□□□□ 0.19
DDX54-206ENST00000549271 RTFDC1Q9BY42 306 aaPredicted RBP16.23■□□□□ 0.19
DDX54-206ENST00000549271 NUDCQ9Y266 331 aa16.23■□□□□ 0.19
DDX54-206ENST00000549271 ERVV-1B6SEH8 477 aa16.22■□□□□ 0.19
DDX54-206ENST00000549271 TRPA1O75762 1119 aa16.22■□□□□ 0.19
DDX54-206ENST00000549271 DLK2Q6UY11 383 aa16.22■□□□□ 0.19
DDX54-206ENST00000549271 USP48Q86UV5 1035 aa16.22■□□□□ 0.19
DDX54-206ENST00000549271 CCDC102AQ96A19 550 aa16.22■□□□□ 0.19
DDX54-206ENST00000549271 ATP6V0A2Q9Y487 856 aa16.22■□□□□ 0.19
DDX54-206ENST00000549271 UBN2Q6ZU65 1347 aa16.21■□□□□ 0.19
DDX54-206ENST00000549271 C3orf67Q6ZVT6 689 aa16.21■□□□□ 0.19
DDX54-206ENST00000549271 SUPT20HQ8NEM7 779 aa16.21■□□□□ 0.19
DDX54-206ENST00000549271 BCL2L13Q9BXK5 485 aa16.21■□□□□ 0.19
DDX54-206ENST00000549271 CNOT7Q9UIV1 285 aaKnown RBP16.21■□□□□ 0.19
DDX54-206ENST00000549271 SHTN1A0MZ66 631 aa16.2■□□□□ 0.18
DDX54-206ENST00000549271 TNIP1Q15025 636 aa16.2■□□□□ 0.18
DDX54-206ENST00000549271 HPS5Q9UPZ3 1129 aa16.2■□□□□ 0.18
DDX54-206ENST00000549271 MAP3K15Q6ZN16 1313 aa16.19■□□□□ 0.18
DDX54-206ENST00000549271 LAMB2P55268 1798 aa16.19■□□□□ 0.18
DDX54-206ENST00000549271 HTATSF1O43719 755 aaKnown RBP16.19■□□□□ 0.18
DDX54-206ENST00000549271 RAD17O75943 681 aa16.19■□□□□ 0.18
DDX54-206ENST00000549271 NTSR2O95665 410 aa16.19■□□□□ 0.18
DDX54-206ENST00000549271 PPP2R1AP30153 589 aa16.19■□□□□ 0.18
DDX54-206ENST00000549271 KIAA2012Q0VF49 1180 aa16.19■□□□□ 0.18
DDX54-206ENST00000549271 SUSD4Q5VX71 490 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms