RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 CICQ96RK0 1608 aaPredicted RBP16.47■□□□□ 0.23
PTCH1-215ENST00000547672 NUP188Q5SRE5 1749 aa16.47■□□□□ 0.23
PTCH1-215ENST00000547672 GLRX3O76003 335 aaKnown RBP16.46■□□□□ 0.23
PTCH1-215ENST00000547672 REC8O95072 547 aa16.46■□□□□ 0.23
PTCH1-215ENST00000547672 CRKLP46109 303 aaKnown RBP16.46■□□□□ 0.23
PTCH1-215ENST00000547672 RC3H1Q5TC82 1133 aaKnown RBP16.46■□□□□ 0.23
PTCH1-215ENST00000547672 IL27Q8NEV9 243 aa16.46■□□□□ 0.23
PTCH1-215ENST00000547672 PLA2G12BQ9BX93 195 aa16.46■□□□□ 0.23
PTCH1-215ENST00000547672 C22orf23Q9BZE7 217 aa16.46■□□□□ 0.23
PTCH1-215ENST00000547672 QTRT2Q9H974 415 aaKnown RBP16.46■□□□□ 0.23
PTCH1-215ENST00000547672 SALL3Q9BXA9 1300 aa16.45■□□□□ 0.22
PTCH1-215ENST00000547672 CDHR2Q9BYE9 1310 aa16.45■□□□□ 0.22
PTCH1-215ENST00000547672 USP42Q9H9J4 1324 aaKnown RBP16.45■□□□□ 0.22
PTCH1-215ENST00000547672 SDSP20132 328 aa16.45■□□□□ 0.22
PTCH1-215ENST00000547672 PARP10Q53GL7 1025 aa16.45■□□□□ 0.22
PTCH1-215ENST00000547672 LMBR1LQ6UX01 489 aa16.45■□□□□ 0.22
PTCH1-215ENST00000547672 TBC1D9Q6ZT07 1266 aa16.45■□□□□ 0.22
PTCH1-215ENST00000547672 ZBTB1Q9Y2K1 713 aa16.45■□□□□ 0.22
PTCH1-215ENST00000547672 THSD7AQ9UPZ6 1657 aa16.44■□□□□ 0.22
PTCH1-215ENST00000547672 MFAP1P55081 439 aaKnown RBP16.44■□□□□ 0.22
PTCH1-215ENST00000547672 FOXO4P98177 505 aa16.44■□□□□ 0.22
PTCH1-215ENST00000547672 INTS5Q6P9B9 1019 aaKnown RBP16.44■□□□□ 0.22
PTCH1-215ENST00000547672 CLEC4GQ6UXB4 293 aa16.44■□□□□ 0.22
PTCH1-215ENST00000547672 BCL11AQ9H165 835 aa16.44■□□□□ 0.22
PTCH1-215ENST00000547672 IL1RAPL2Q9NP60 686 aa16.44■□□□□ 0.22
PTCH1-215ENST00000547672 ECHDC1Q9NTX5 307 aa16.44■□□□□ 0.22
PTCH1-215ENST00000547672 EPB41L2O43491 1005 aaKnown RBP16.43■□□□□ 0.22
PTCH1-215ENST00000547672 CIAO1O76071 339 aa16.43■□□□□ 0.22
PTCH1-215ENST00000547672 SEC24BO95487 1268 aa16.43■□□□□ 0.22
PTCH1-215ENST00000547672 GSPT1P15170 499 aaKnown RBP16.43■□□□□ 0.22
PTCH1-215ENST00000547672 CCDC57Q2TAC2 916 aa16.43■□□□□ 0.22
PTCH1-215ENST00000547672 ZNF772Q68DY9 489 aaPredicted RBP16.43■□□□□ 0.22
PTCH1-215ENST00000547672 CNTROBQ8N137 903 aa16.43■□□□□ 0.22
PTCH1-215ENST00000547672 GPR108Q9NPR9 543 aa16.43■□□□□ 0.22
PTCH1-215ENST00000547672 CNTNAP4Q9C0A0 1308 aa16.43■□□□□ 0.22
PTCH1-215ENST00000547672 TJP1Q07157 1748 aa16.42■□□□□ 0.22
PTCH1-215ENST00000547672 TRIM6-TRIM34B2RNG4 842 aa16.42■□□□□ 0.22
PTCH1-215ENST00000547672 KCNQ2O43526 872 aa16.42■□□□□ 0.22
PTCH1-215ENST00000547672 IL15P40933 162 aaPredicted RBP16.42■□□□□ 0.22
PTCH1-215ENST00000547672 RBM25P49756 843 aaKnown RBP16.42■□□□□ 0.22
PTCH1-215ENST00000547672 NLRP10Q86W26 655 aa16.42■□□□□ 0.22
PTCH1-215ENST00000547672 TICAM2Q86XR7 235 aa16.42■□□□□ 0.22
PTCH1-215ENST00000547672 SEPT12Q8IYM1 358 aa16.42■□□□□ 0.22
PTCH1-215ENST00000547672 OTUD7AQ8TE49 926 aaPredicted RBP16.42■□□□□ 0.22
PTCH1-215ENST00000547672 CHMP3Q9Y3E7 222 aa16.42■□□□□ 0.22
PTCH1-215ENST00000547672 HIP1O00291 1037 aa16.41■□□□□ 0.22
PTCH1-215ENST00000547672 PTPN12Q05209 780 aaKnown RBP16.41■□□□□ 0.22
PTCH1-215ENST00000547672 EPHA10Q5JZY3 1008 aa16.41■□□□□ 0.22
PTCH1-215ENST00000547672 FAM196AQ6ZSG2 479 aa16.41■□□□□ 0.22
PTCH1-215ENST00000547672 AACSQ86V21 672 aa16.41■□□□□ 0.22
PTCH1-215ENST00000547672 ZNF34Q8IZ26 560 aa16.41■□□□□ 0.22
PTCH1-215ENST00000547672 TRMT112Q9UI30 125 aaKnown RBP16.41■□□□□ 0.22
PTCH1-215ENST00000547672 RFX5P48382 616 aaPredicted RBP16.4■□□□□ 0.22
PTCH1-215ENST00000547672 NUTM1Q86Y26 1132 aa16.4■□□□□ 0.22
PTCH1-215ENST00000547672 RUFY2Q8WXA3 655 aa16.4■□□□□ 0.22
PTCH1-215ENST00000547672 BCL11BQ9C0K0 894 aaPredicted RBP16.4■□□□□ 0.22
PTCH1-215ENST00000547672 TBC1D2BQ9UPU7 963 aa16.4■□□□□ 0.22
PTCH1-215ENST00000547672 PA2G4Q9UQ80 394 aaKnown RBP16.4■□□□□ 0.22
PTCH1-215ENST00000547672 AKAP2Q9Y2D5 859 aa16.4■□□□□ 0.22
PTCH1-215ENST00000547672 PDE8AO60658 829 aa16.39■□□□□ 0.21
PTCH1-215ENST00000547672 SASH1O94885 1247 aa16.39■□□□□ 0.21
PTCH1-215ENST00000547672 CSF1RP07333 972 aa16.39■□□□□ 0.21
PTCH1-215ENST00000547672 IFIT5Q13325 482 aaKnown RBP16.39■□□□□ 0.21
PTCH1-215ENST00000547672 ITPK1Q13572 414 aa16.39■□□□□ 0.21
PTCH1-215ENST00000547672 TAF7LQ5H9L4 462 aa16.39■□□□□ 0.21
PTCH1-215ENST00000547672 RILPL2Q969X0 211 aa16.39■□□□□ 0.21
PTCH1-215ENST00000547672 UTP14AQ9BVJ6 771 aaKnown RBP16.39■□□□□ 0.21
PTCH1-215ENST00000547672 RREB1Q92766 1687 aa16.39■□□□□ 0.21
PTCH1-215ENST00000547672 RPS6KA4O75676 772 aa16.38■□□□□ 0.21
PTCH1-215ENST00000547672 MCCP23508 829 aa16.38■□□□□ 0.21
PTCH1-215ENST00000547672 HLFQ16534 295 aa16.38■□□□□ 0.21
PTCH1-215ENST00000547672 SIL1Q9H173 461 aa16.38■□□□□ 0.21
PTCH1-215ENST00000547672 NHSQ6T4R5 1651 aa16.37■□□□□ 0.21
PTCH1-215ENST00000547672 EYA2O00167 538 aa16.37■□□□□ 0.21
PTCH1-215ENST00000547672 JARID2Q92833 1246 aaPredicted RBP16.37■□□□□ 0.21
PTCH1-215ENST00000547672 EVI5LQ96CN4 794 aa16.37■□□□□ 0.21
PTCH1-215ENST00000547672 CEP126Q9P2H0 1117 aa16.37■□□□□ 0.21
PTCH1-215ENST00000547672 CCNL1Q9UK58 526 aaPredicted RBP16.37■□□□□ 0.21
PTCH1-215ENST00000547672 SH3TC1Q8TE82 1336 aa16.37■□□□□ 0.21
PTCH1-215ENST00000547672 ANKRD36CQ5JPF3 1778 aa16.36■□□□□ 0.21
PTCH1-215ENST00000547672 NUP98P52948 1817 aa16.36■□□□□ 0.21
PTCH1-215ENST00000547672 ANKRD18BA2A2Z9 1011 aa16.36■□□□□ 0.21
PTCH1-215ENST00000547672 IRS4O14654 1257 aaPredicted RBP16.36■□□□□ 0.21
PTCH1-215ENST00000547672 CAMTA2O94983 1202 aa16.36■□□□□ 0.21
PTCH1-215ENST00000547672 GPTP24298 496 aa16.36■□□□□ 0.21
PTCH1-215ENST00000547672 RBM6P78332 1123 aaKnown RBP16.36■□□□□ 0.21
PTCH1-215ENST00000547672 PI4K2BQ8TCG2 481 aa16.36■□□□□ 0.21
PTCH1-215ENST00000547672 FAM89AQ96GI7 184 aa16.36■□□□□ 0.21
PTCH1-215ENST00000547672 CHMLP26374 656 aa16.35■□□□□ 0.21
PTCH1-215ENST00000547672 TNNI3KQ59H18 835 aa16.35■□□□□ 0.21
PTCH1-215ENST00000547672 KRT27Q7Z3Y8 459 aa16.35■□□□□ 0.21
PTCH1-215ENST00000547672 RTCBQ9Y3I0 505 aaKnown RBP16.35■□□□□ 0.21
PTCH1-215ENST00000547672 FPGT-TNNI3KV9GXZ4 949 aa16.35■□□□□ 0.21
PTCH1-215ENST00000547672 ZPR1O75312 459 aa16.34■□□□□ 0.21
PTCH1-215ENST00000547672 ATP5JP18859 108 aa16.34■□□□□ 0.21
PTCH1-215ENST00000547672 CTSWP56202 376 aa16.34■□□□□ 0.21
PTCH1-215ENST00000547672 TFCP2Q12800 502 aa16.34■□□□□ 0.21
PTCH1-215ENST00000547672 RTL5Q5HYW3 569 aaPredicted RBP16.34■□□□□ 0.21
PTCH1-215ENST00000547672 SLC27A3Q5K4L6 730 aa16.34■□□□□ 0.21
PTCH1-215ENST00000547672 KIAA1211Q6ZU35 1233 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms