RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 PDE4DIPQ5VU43 2346 aa12.68□□□□□ -0.38
CHD4-212ENST00000545083 U2SURPO15042 1029 aaKnown RBP12.68□□□□□ -0.38
CHD4-212ENST00000545083 CRY2Q49AN0 593 aa12.68□□□□□ -0.38
CHD4-212ENST00000545083 CFAP44Q96MT7 982 aa12.68□□□□□ -0.38
CHD4-212ENST00000545083 MAP2K2P36507 400 aa12.67□□□□□ -0.38
CHD4-212ENST00000545083 PHACTR3Q96KR7 559 aa12.67□□□□□ -0.38
CHD4-212ENST00000545083 CC2D1BQ5T0F9 858 aaKnown RBP12.66□□□□□ -0.38
CHD4-212ENST00000545083 USP50Q70EL3 339 aaPredicted RBP12.66□□□□□ -0.38
CHD4-212ENST00000545083 SAPCD2Q86UD0 394 aa12.66□□□□□ -0.38
CHD4-212ENST00000545083 NUTM1Q86Y26 1132 aa12.66□□□□□ -0.38
CHD4-212ENST00000545083 LARGE2Q8N3Y3 721 aa12.66□□□□□ -0.38
CHD4-212ENST00000545083 TRPM7Q96QT4 1865 aa12.65□□□□□ -0.38
CHD4-212ENST00000545083 CASP8AP2Q9UKL3 1982 aa12.65□□□□□ -0.38
CHD4-212ENST00000545083 RGL2O15211 777 aa12.65□□□□□ -0.38
CHD4-212ENST00000545083 PER1O15534 1290 aaPredicted RBP12.65□□□□□ -0.38
CHD4-212ENST00000545083 CELF2O95319 508 aaKnown RBP12.65□□□□□ -0.38
CHD4-212ENST00000545083 SNRPA1P09661 255 aaKnown RBP12.65□□□□□ -0.38
CHD4-212ENST00000545083 GTF2E1P29083 439 aaPredicted RBP12.65□□□□□ -0.38
CHD4-212ENST00000545083 ZIC5Q96T25 663 aa12.65□□□□□ -0.38
CHD4-212ENST00000545083 GLIS2Q9BZE0 524 aaPredicted RBP12.65□□□□□ -0.38
CHD4-212ENST00000545083 DGKZQ13574 1117 aa12.64□□□□□ -0.39
CHD4-212ENST00000545083 CC2D2BQ6DHV5 1058 aa12.64□□□□□ -0.39
CHD4-212ENST00000545083 GPRC5DQ9NZD1 345 aa12.64□□□□□ -0.39
CHD4-212ENST00000545083 TCERG1O14776 1098 aaKnown RBP12.63□□□□□ -0.39
CHD4-212ENST00000545083 CA12O43570 354 aa12.63□□□□□ -0.39
CHD4-212ENST00000545083 HOXA10P31260 410 aaPredicted RBP12.63□□□□□ -0.39
CHD4-212ENST00000545083 PRKAR2BP31323 418 aa12.63□□□□□ -0.39
CHD4-212ENST00000545083 BRPF1P55201 1214 aaPredicted RBP12.63□□□□□ -0.39
CHD4-212ENST00000545083 CIAPIN1Q6FI81 312 aa12.63□□□□□ -0.39
CHD4-212ENST00000545083 MCM10Q7L590 875 aa12.63□□□□□ -0.39
CHD4-212ENST00000545083 KIF7Q2M1P5 1343 aa12.62□□□□□ -0.39
CHD4-212ENST00000545083 AOC3Q16853 763 aa12.62□□□□□ -0.39
CHD4-212ENST00000545083 C3orf67Q6ZVT6 689 aa12.62□□□□□ -0.39
CHD4-212ENST00000545083 NIM1KQ8IY84 436 aa12.62□□□□□ -0.39
CHD4-212ENST00000545083 RSPH6AQ9H0K4 717 aa12.62□□□□□ -0.39
CHD4-212ENST00000545083 ADARB2Q9NS39 739 aaKnown RBP12.62□□□□□ -0.39
CHD4-212ENST00000545083 RIC1Q4ADV7 1423 aa12.62□□□□□ -0.39
CHD4-212ENST00000545083 UBN2Q6ZU65 1347 aa12.62□□□□□ -0.39
CHD4-212ENST00000545083 NPC1L1Q9UHC9 1359 aa12.61□□□□□ -0.39
CHD4-212ENST00000545083 PPEF1O14829 653 aaPredicted RBP12.61□□□□□ -0.39
CHD4-212ENST00000545083 PPIP5K2O43314 1243 aa12.61□□□□□ -0.39
CHD4-212ENST00000545083 HIRAP54198 1017 aaPredicted RBP12.61□□□□□ -0.39
CHD4-212ENST00000545083 CXCL9Q07325 125 aa12.61□□□□□ -0.39
CHD4-212ENST00000545083 CNGB1Q14028 1251 aaPredicted RBP12.61□□□□□ -0.39
CHD4-212ENST00000545083 DCTN1Q14203 1278 aa12.61□□□□□ -0.39
CHD4-212ENST00000545083 RPGRQ92834 1020 aaKnown RBP12.61□□□□□ -0.39
CHD4-212ENST00000545083 HHIPL1Q96JK4 782 aa12.61□□□□□ -0.39
CHD4-212ENST00000545083 PGAP2Q9UHJ9 254 aa12.61□□□□□ -0.39
CHD4-212ENST00000545083 GPTP24298 496 aa12.6□□□□□ -0.39
CHD4-212ENST00000545083 GMPSP49915 693 aaPredicted RBP12.6□□□□□ -0.39
CHD4-212ENST00000545083 SUSD4Q5VX71 490 aa12.6□□□□□ -0.39
CHD4-212ENST00000545083 DLK2Q6UY11 383 aa12.6□□□□□ -0.39
CHD4-212ENST00000545083 TTLL7Q6ZT98 887 aa12.6□□□□□ -0.39
CHD4-212ENST00000545083 NGEFQ8N5V2 710 aa12.6□□□□□ -0.39
CHD4-212ENST00000545083 CRAMP1Q96RY5 1269 aa12.6□□□□□ -0.39
CHD4-212ENST00000545083 NYXQ9GZU5 481 aa12.6□□□□□ -0.39
CHD4-212ENST00000545083 ZNF408Q9H9D4 720 aa12.6□□□□□ -0.39
CHD4-212ENST00000545083 SHTN1A0MZ66 631 aa12.59□□□□□ -0.39
CHD4-212ENST00000545083 SOX10P56693 466 aa12.59□□□□□ -0.39
CHD4-212ENST00000545083 GRIPAP1Q4V328 841 aa12.59□□□□□ -0.39
CHD4-212ENST00000545083 TRPM4Q8TD43 1214 aa12.59□□□□□ -0.39
CHD4-212ENST00000545083 RBM17Q96I25 401 aaKnown RBP12.59□□□□□ -0.39
CHD4-212ENST00000545083 MIS18AQ9NYP9 233 aa12.59□□□□□ -0.39
CHD4-212ENST00000545083 MAP3K15Q6ZN16 1313 aa12.59□□□□□ -0.39
CHD4-212ENST00000545083 ERVV-1B6SEH8 477 aa12.58□□□□□ -0.4
CHD4-212ENST00000545083 NTSR2O95665 410 aa12.58□□□□□ -0.4
CHD4-212ENST00000545083 ZNRF3Q9ULT6 936 aa12.58□□□□□ -0.4
CHD4-212ENST00000545083 CLSPNQ9HAW4 1339 aa12.58□□□□□ -0.4
CHD4-212ENST00000545083 IBTKQ9P2D0 1353 aaPredicted RBP12.57□□□□□ -0.4
CHD4-212ENST00000545083 NOGQ13253 232 aa12.57□□□□□ -0.4
CHD4-212ENST00000545083 RTF1Q92541 710 aaKnown RBP12.57□□□□□ -0.4
CHD4-212ENST00000545083 ZBTB3Q9H5J0 574 aa12.57□□□□□ -0.4
CHD4-212ENST00000545083 ATP6V0A2Q9Y487 856 aa12.57□□□□□ -0.4
CHD4-212ENST00000545083 NUP98P52948 1817 aa12.56□□□□□ -0.4
CHD4-212ENST00000545083 FAM155AB1AL88 458 aaPredicted RBP12.56□□□□□ -0.4
CHD4-212ENST00000545083 RAD17O75943 681 aa12.56□□□□□ -0.4
CHD4-212ENST00000545083 HUNKP57058 714 aa12.56□□□□□ -0.4
CHD4-212ENST00000545083 TRIM26Q12899 539 aaPredicted RBP12.56□□□□□ -0.4
CHD4-212ENST00000545083 CDC37L1Q7L3B6 337 aa12.56□□□□□ -0.4
CHD4-212ENST00000545083 ZNF34Q8IZ26 560 aa12.56□□□□□ -0.4
CHD4-212ENST00000545083 ZC3H15Q8WU90 426 aaKnown RBP12.56□□□□□ -0.4
CHD4-212ENST00000545083 RTFDC1Q9BY42 306 aaPredicted RBP12.56□□□□□ -0.4
CHD4-212ENST00000545083 TAF7Q15545 349 aaPredicted RBP12.55□□□□□ -0.4
CHD4-212ENST00000545083 USP48Q86UV5 1035 aa12.55□□□□□ -0.4
CHD4-212ENST00000545083 BCL2L13Q9BXK5 485 aa12.55□□□□□ -0.4
CHD4-212ENST00000545083 VPS33BQ9H267 617 aa12.55□□□□□ -0.4
CHD4-212ENST00000545083 RRP7AQ9Y3A4 280 aaKnown RBP12.55□□□□□ -0.4
CHD4-212ENST00000545083 LAMB4A4D0S4 1761 aa12.55□□□□□ -0.4
CHD4-212ENST00000545083 ABCC4O15439 1325 aa12.55□□□□□ -0.4
CHD4-212ENST00000545083 CDHR2Q9BYE9 1310 aa12.55□□□□□ -0.4
CHD4-212ENST00000545083 YDJCA8MPS7 323 aa12.54□□□□□ -0.4
CHD4-212ENST00000545083 MYL6BP14649 208 aa12.54□□□□□ -0.4
CHD4-212ENST00000545083 KIAA2012Q0VF49 1180 aa12.54□□□□□ -0.4
CHD4-212ENST00000545083 KIF6Q6ZMV9 814 aa12.54□□□□□ -0.4
CHD4-212ENST00000545083 PCGF6Q9BYE7 350 aa12.54□□□□□ -0.4
CHD4-212ENST00000545083 CNOT7Q9UIV1 285 aaKnown RBP12.54□□□□□ -0.4
CHD4-212ENST00000545083 HTATSF1O43719 755 aaKnown RBP12.53□□□□□ -0.4
CHD4-212ENST00000545083 KIF23Q02241 960 aaPredicted RBP12.53□□□□□ -0.4
CHD4-212ENST00000545083 SUPT20HQ8NEM7 779 aa12.53□□□□□ -0.4
CHD4-212ENST00000545083 NLRP3Q96P20 1036 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms