RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 SPTLC1O15269 473 aa5.86□□□□□ -1.47
SNHG1-220ENST00000544550 SSFA2P28290 1259 aa5.86□□□□□ -1.47
SNHG1-220ENST00000544550 GJA5P36382 358 aa5.86□□□□□ -1.47
SNHG1-220ENST00000544550 GCGRP47871 477 aa5.86□□□□□ -1.47
SNHG1-220ENST00000544550 ARHGAP27Q6ZUM4 889 aa5.86□□□□□ -1.47
SNHG1-220ENST00000544550 RIC3Q7Z5B4 369 aa5.86□□□□□ -1.47
SNHG1-220ENST00000544550 NUTM1Q86Y26 1132 aa5.86□□□□□ -1.47
SNHG1-220ENST00000544550 RDH13Q8NBN7 331 aa5.86□□□□□ -1.47
SNHG1-220ENST00000544550 ZMYND15Q9H091 742 aa5.86□□□□□ -1.47
SNHG1-220ENST00000544550 LY75O60449 1722 aa5.85□□□□□ -1.47
SNHG1-220ENST00000544550 PXDNLA1KZ92 1463 aa5.85□□□□□ -1.47
SNHG1-220ENST00000544550 KTN1Q86UP2 1357 aaKnown RBP5.85□□□□□ -1.47
SNHG1-220ENST00000544550 PALLDQ8WX93 1383 aa5.85□□□□□ -1.47
SNHG1-220ENST00000544550 CGNL1Q0VF96 1302 aa5.85□□□□□ -1.47
SNHG1-220ENST00000544550 ZC3H4Q9UPT8 1303 aaKnown RBP5.85□□□□□ -1.47
SNHG1-220ENST00000544550 SLC10A3P09131 477 aa5.85□□□□□ -1.47
SNHG1-220ENST00000544550 C9orf131Q5VYM1 1079 aa5.85□□□□□ -1.47
SNHG1-220ENST00000544550 RSBN1LQ6PCB5 846 aaPredicted RBP5.85□□□□□ -1.47
SNHG1-220ENST00000544550 ZCRB1Q8TBF4 217 aaKnown RBP5.85□□□□□ -1.47
SNHG1-220ENST00000544550 SMARCC1Q92922 1105 aaPredicted RBP5.85□□□□□ -1.47
SNHG1-220ENST00000544550 PRDM10Q9NQV6 1147 aa5.85□□□□□ -1.47
SNHG1-220ENST00000544550 V9GY48 417 aaPredicted RBP5.85□□□□□ -1.47
SNHG1-220ENST00000544550 TUBGCP6Q96RT7 1819 aa5.85□□□□□ -1.47
SNHG1-220ENST00000544550 SOWAHBA6NEL2 793 aa5.84□□□□□ -1.47
SNHG1-220ENST00000544550 MOXD2PA6NHM9 499 aa5.84□□□□□ -1.47
SNHG1-220ENST00000544550 KDM4AO75164 1064 aa5.84□□□□□ -1.47
SNHG1-220ENST00000544550 PPP2R2DQ66LE6 453 aa5.84□□□□□ -1.47
SNHG1-220ENST00000544550 IP6K1Q92551 441 aa5.84□□□□□ -1.47
SNHG1-220ENST00000544550 RRAGCQ9HB90 399 aa5.84□□□□□ -1.47
SNHG1-220ENST00000544550 GOLGB1Q14789 3259 aaKnown RBP5.84□□□□□ -1.47
SNHG1-220ENST00000544550 KCPQ6ZWJ8 1503 aa5.84□□□□□ -1.48
SNHG1-220ENST00000544550 MMP10P09238 476 aa5.83□□□□□ -1.48
SNHG1-220ENST00000544550 NDUFV2P19404 249 aa5.83□□□□□ -1.48
SNHG1-220ENST00000544550 USP46P62068 366 aa5.83□□□□□ -1.48
SNHG1-220ENST00000544550 SAMD7Q7Z3H4 446 aa5.83□□□□□ -1.48
SNHG1-220ENST00000544550 SLF2Q8IX21 1173 aa5.83□□□□□ -1.48
SNHG1-220ENST00000544550 AIDAQ96BJ3 306 aa5.83□□□□□ -1.48
SNHG1-220ENST00000544550 CCDC87Q9NVE4 849 aa5.83□□□□□ -1.48
SNHG1-220ENST00000544550 RNF181Q9P0P0 153 aa5.83□□□□□ -1.48
SNHG1-220ENST00000544550 DOT1LQ8TEK3 1739 aa5.82□□□□□ -1.48
SNHG1-220ENST00000544550 KIAA1210Q9ULL0 1709 aa5.82□□□□□ -1.48
SNHG1-220ENST00000544550 C5P01031 1676 aa5.82□□□□□ -1.48
SNHG1-220ENST00000544550 HOXA2O43364 376 aa5.82□□□□□ -1.48
SNHG1-220ENST00000544550 VEGFAP15692 232 aaPredicted RBP5.82□□□□□ -1.48
SNHG1-220ENST00000544550 RFC5P40937 340 aa5.82□□□□□ -1.48
SNHG1-220ENST00000544550 CTCFP49711 727 aaPredicted RBP5.82□□□□□ -1.48
SNHG1-220ENST00000544550 MLLT1Q03111 559 aaPredicted RBP5.82□□□□□ -1.48
SNHG1-220ENST00000544550 MCM6Q14566 821 aa5.82□□□□□ -1.48
SNHG1-220ENST00000544550 NBPF1Q3BBV0 1214 aa5.82□□□□□ -1.48
SNHG1-220ENST00000544550 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.82□□□□□ -1.48
SNHG1-220ENST00000544550 NLGN1Q8N2Q7 840 aa5.82□□□□□ -1.48
SNHG1-220ENST00000544550 ZFRQ96KR1 1074 aaKnown RBP5.82□□□□□ -1.48
SNHG1-220ENST00000544550 PIM2Q9P1W9 311 aa5.82□□□□□ -1.48
SNHG1-220ENST00000544550 USP54Q70EL1 1684 aa5.82□□□□□ -1.48
SNHG1-220ENST00000544550 PCDH11XQ9BZA7 1347 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 PCDH11YQ9BZA8 1340 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 RGPD5Q99666 1765 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 A0A0G2JLW4 131 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 LILRB3O75022 631 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 DPEP1P16444 411 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 SLC4A3P48751 1232 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 DALRD3Q5D0E6 543 aaKnown RBP5.81□□□□□ -1.48
SNHG1-220ENST00000544550 MPRIPQ6WCQ1 1025 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 HDGFL2Q7Z4V5 671 aaPredicted RBP5.81□□□□□ -1.48
SNHG1-220ENST00000544550 BANK1Q8NDB2 785 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 RAPGEF4Q8WZA2 1011 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 LTV1Q96GA3 475 aaPredicted RBP5.81□□□□□ -1.48
SNHG1-220ENST00000544550 DCAF5Q96JK2 942 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 PRKD2Q9BZL6 878 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 PCDHB15Q9Y5E8 787 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 PARP3Q9Y6F1 533 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 C4BP0C0L5 1744 aa5.81□□□□□ -1.48
SNHG1-220ENST00000544550 TNRC6CQ9HCJ0 1690 aaKnown RBP5.81□□□□□ -1.48
SNHG1-220ENST00000544550 FAM208AQ9UK61 1670 aaKnown RBP5.81□□□□□ -1.48
SNHG1-220ENST00000544550 GLTPD2A6NH11 291 aa5.8□□□□□ -1.48
SNHG1-220ENST00000544550 FOXN1O15353 648 aa5.8□□□□□ -1.48
SNHG1-220ENST00000544550 TATP17735 454 aaPredicted RBP5.8□□□□□ -1.48
SNHG1-220ENST00000544550 TMF1P82094 1093 aa5.8□□□□□ -1.48
SNHG1-220ENST00000544550 QPCTQ16769 361 aa5.8□□□□□ -1.48
SNHG1-220ENST00000544550 TMEM259Q4ZIN3 620 aa5.8□□□□□ -1.48
SNHG1-220ENST00000544550 TRAPPC3LQ5T215 181 aa5.8□□□□□ -1.48
SNHG1-220ENST00000544550 PRPF38BQ5VTL8 546 aaKnown RBP5.8□□□□□ -1.48
SNHG1-220ENST00000544550 NME9Q86XW9 330 aa5.8□□□□□ -1.48
SNHG1-220ENST00000544550 ABHD8Q96I13 439 aa5.8□□□□□ -1.48
SNHG1-220ENST00000544550 SMG6Q86US8 1419 aaKnown RBP5.8□□□□□ -1.48
SNHG1-220ENST00000544550 MEGF6O75095 1541 aa5.79□□□□□ -1.48
SNHG1-220ENST00000544550 CD163L1Q9NR16 1453 aa5.79□□□□□ -1.48
SNHG1-220ENST00000544550 LOC102724428A0A0B4J2F2 783 aa5.79□□□□□ -1.48
SNHG1-220ENST00000544550 SPDYE5A6NIY4 337 aa5.79□□□□□ -1.48
SNHG1-220ENST00000544550 CFHP08603 1231 aa5.79□□□□□ -1.48
SNHG1-220ENST00000544550 FDX1P10109 184 aa5.79□□□□□ -1.48
SNHG1-220ENST00000544550 HOXC9P31274 260 aa5.79□□□□□ -1.48
SNHG1-220ENST00000544550 AMPHP49418 695 aa5.79□□□□□ -1.48
SNHG1-220ENST00000544550 RGS19P49795 217 aa5.79□□□□□ -1.48
SNHG1-220ENST00000544550 SIK1P57059 783 aa5.79□□□□□ -1.48
SNHG1-220ENST00000544550 AMIGO3Q86WK7 504 aa5.79□□□□□ -1.48
SNHG1-220ENST00000544550 PCDHGC3Q9UN70 934 aa5.79□□□□□ -1.48
SNHG1-220ENST00000544550 RTCBQ9Y3I0 505 aaKnown RBP5.79□□□□□ -1.48
SNHG1-220ENST00000544550 EDC4Q6P2E9 1401 aaKnown RBP5.79□□□□□ -1.48
SNHG1-220ENST00000544550 RTL1A6NKG5 1358 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms