RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	A1BG	P04217	495 aa		12.01	□□□□□ -0.49
YBX3-215	ENST00000544504	INTS3	Q68E01	1043 aa	Known RBP	12.01	□□□□□ -0.49
YBX3-215	ENST00000544504	DPY19L2	Q6NUT2	758 aa		12.01	□□□□□ -0.49
YBX3-215	ENST00000544504	KSR2	Q6VAB6	950 aa		12.01	□□□□□ -0.49
YBX3-215	ENST00000544504	G2E3	Q7L622	706 aa		12.01	□□□□□ -0.49
YBX3-215	ENST00000544504	PANK1	Q8TE04	598 aa		12.01	□□□□□ -0.49
YBX3-215	ENST00000544504	CLUAP1	Q96AJ1	413 aa		12.01	□□□□□ -0.49
YBX3-215	ENST00000544504	AIDA	Q96BJ3	306 aa		12.01	□□□□□ -0.49
YBX3-215	ENST00000544504	PHAX	Q9H814	394 aa	Known RBP	12.01	□□□□□ -0.49
YBX3-215	ENST00000544504		A0A087WZG4	1122 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	POTEC	B2RU33	542 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	POLRMT	O00411	1230 aa	Known RBP	12	□□□□□ -0.49
YBX3-215	ENST00000544504	CRKL	P46109	303 aa	Known RBP	12	□□□□□ -0.49
YBX3-215	ENST00000544504	NEXN	Q0ZGT2	675 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	FAM161A	Q3B820	660 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	CHADL	Q6NUI6	762 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	KIF6	Q6ZMV9	814 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	RIC3	Q7Z5B4	369 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	ITPRIP	Q8IWB1	547 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	PLBD2	Q8NHP8	589 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	XAGE3	Q8WTP9	111 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	DNAAF4	Q8WXU2	420 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	SRP68	Q9UHB9	627 aa	Known RBP	12	□□□□□ -0.49
YBX3-215	ENST00000544504	HDAC5	Q9UQL6	1122 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	CNTNAP1	P78357	1384 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	SBF1	O95248	1867 aa		12	□□□□□ -0.49
YBX3-215	ENST00000544504	PI4KAP2	A4QPH2	592 aa		11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	NBPF26	B4DH59	902 aa		11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	TM4SF1	P30408	202 aa		11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	IRX6	P78412	446 aa	Predicted RBP	11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	PROSER3	Q2NL68	480 aa		11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	C20orf194	Q5TEA3	1177 aa		11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	NBPF10	Q6P3W6	841 aa	Known RBP	11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	ANKRD13D	Q6ZTN6	518 aa		11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	COPS6	Q7L5N1	327 aa		11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	LRP10	Q7Z4F1	713 aa		11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	NBPF15	Q8N660	670 aa		11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	PI4KAP1	Q8N8J0	262 aa		11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	CRBN	Q96SW2	442 aa		11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	COG6	Q9Y2V7	657 aa		11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	COL5A3	P25940	1745 aa	Predicted RBP	11.99	□□□□□ -0.49
YBX3-215	ENST00000544504	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.98	□□□□□ -0.49
YBX3-215	ENST00000544504	RGL2	O15211	777 aa		11.98	□□□□□ -0.49
YBX3-215	ENST00000544504	ANXA1	P04083	346 aa		11.98	□□□□□ -0.49
YBX3-215	ENST00000544504	AIMP1	Q12904	312 aa	Known RBP	11.98	□□□□□ -0.49
YBX3-215	ENST00000544504	SLC4A10	Q6U841	1118 aa		11.98	□□□□□ -0.49
YBX3-215	ENST00000544504	TMEM57	Q8N5G2	664 aa		11.98	□□□□□ -0.49
YBX3-215	ENST00000544504	TTLL6	Q8N841	843 aa		11.98	□□□□□ -0.49
YBX3-215	ENST00000544504	PPP4R2	Q9NY27	417 aa		11.98	□□□□□ -0.49
YBX3-215	ENST00000544504	NFKBIE	O00221	500 aa		11.97	□□□□□ -0.49
YBX3-215	ENST00000544504	ALDH1L1	O75891	902 aa		11.97	□□□□□ -0.49
YBX3-215	ENST00000544504	RLBP1	P12271	317 aa		11.97	□□□□□ -0.49
YBX3-215	ENST00000544504	EIF5	P55010	431 aa	Known RBP	11.97	□□□□□ -0.49
YBX3-215	ENST00000544504	HSP90AB3P	Q58FF7	597 aa		11.97	□□□□□ -0.49
YBX3-215	ENST00000544504	INTS5	Q6P9B9	1019 aa	Known RBP	11.97	□□□□□ -0.49
YBX3-215	ENST00000544504	LINS1	Q8NG48	757 aa		11.97	□□□□□ -0.49
YBX3-215	ENST00000544504	EXOC6	Q8TAG9	804 aa		11.97	□□□□□ -0.49
YBX3-215	ENST00000544504	ABHD8	Q96I13	439 aa		11.97	□□□□□ -0.49
YBX3-215	ENST00000544504	SRCIN1	Q9C0H9	1055 aa		11.97	□□□□□ -0.49
YBX3-215	ENST00000544504	ZBTB1	Q9Y2K1	713 aa		11.97	□□□□□ -0.49
YBX3-215	ENST00000544504	MAP3K2	Q9Y2U5	619 aa		11.97	□□□□□ -0.49
YBX3-215	ENST00000544504	ERVV-1	B6SEH8	477 aa		11.96	□□□□□ -0.49
YBX3-215	ENST00000544504		F6X3S4	739 aa		11.96	□□□□□ -0.49
YBX3-215	ENST00000544504	ZPR1	O75312	459 aa		11.96	□□□□□ -0.49
YBX3-215	ENST00000544504	GNAI3	P08754	354 aa		11.96	□□□□□ -0.49
YBX3-215	ENST00000544504	METTL22	Q9BUU2	404 aa	Predicted RBP	11.96	□□□□□ -0.49
YBX3-215	ENST00000544504	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.96	□□□□□ -0.49
YBX3-215	ENST00000544504	TIAM2	Q8IVF5	1701 aa		11.95	□□□□□ -0.5
YBX3-215	ENST00000544504	MAP3K15	Q6ZN16	1313 aa		11.95	□□□□□ -0.5
YBX3-215	ENST00000544504	VEGFB	P49765	207 aa		11.95	□□□□□ -0.5
YBX3-215	ENST00000544504	LBX1	P52954	281 aa		11.95	□□□□□ -0.5
YBX3-215	ENST00000544504	MLLT1	Q03111	559 aa	Predicted RBP	11.95	□□□□□ -0.5
YBX3-215	ENST00000544504	DZIP3	Q86Y13	1208 aa	Known RBP	11.95	□□□□□ -0.5
YBX3-215	ENST00000544504	WBP1L	Q9NX94	342 aa		11.95	□□□□□ -0.5
YBX3-215	ENST00000544504	TNN	Q9UQP3	1299 aa		11.95	□□□□□ -0.5
YBX3-215	ENST00000544504	ZNF652	Q9Y2D9	606 aa		11.95	□□□□□ -0.5
YBX3-215	ENST00000544504	COL15A1	P39059	1388 aa		11.94	□□□□□ -0.5
YBX3-215	ENST00000544504	PASK	Q96RG2	1323 aa		11.94	□□□□□ -0.5
YBX3-215	ENST00000544504	PIP4K2A	P48426	406 aa	Predicted RBP	11.94	□□□□□ -0.5
YBX3-215	ENST00000544504	ERFE	Q4G0M1	354 aa		11.94	□□□□□ -0.5
YBX3-215	ENST00000544504	BEND3	Q5T5X7	828 aa		11.94	□□□□□ -0.5
YBX3-215	ENST00000544504	USPL1	Q5W0Q7	1092 aa		11.94	□□□□□ -0.5
YBX3-215	ENST00000544504	TMEM88B	A6NKF7	163 aa		11.93	□□□□□ -0.5
YBX3-215	ENST00000544504		H0YIN7	160 aa		11.93	□□□□□ -0.5
YBX3-215	ENST00000544504	ZBTB7B	O15156	539 aa	Predicted RBP	11.93	□□□□□ -0.5
YBX3-215	ENST00000544504	POTEI	P0CG38	1075 aa		11.93	□□□□□ -0.5
YBX3-215	ENST00000544504	POTEJ	P0CG39	1038 aa		11.93	□□□□□ -0.5
YBX3-215	ENST00000544504	TRIM28	Q13263	835 aa	Known RBP	11.93	□□□□□ -0.5
YBX3-215	ENST00000544504	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.93	□□□□□ -0.5
YBX3-215	ENST00000544504	TTLL7	Q6ZT98	887 aa		11.93	□□□□□ -0.5
YBX3-215	ENST00000544504	C2CD5	Q86YS7	1000 aa		11.93	□□□□□ -0.5
YBX3-215	ENST00000544504	CCDC136	Q96JN2	1154 aa		11.93	□□□□□ -0.5
YBX3-215	ENST00000544504	ZBTB40	Q9NUA8	1239 aa		11.93	□□□□□ -0.5
YBX3-215	ENST00000544504	ARFGEF2	Q9Y6D5	1785 aa		11.92	□□□□□ -0.5
YBX3-215	ENST00000544504	MYH14	Q7Z406	1995 aa	Known RBP	11.92	□□□□□ -0.5
YBX3-215	ENST00000544504	IQCA1L	A6NCM1	817 aa		11.92	□□□□□ -0.5
YBX3-215	ENST00000544504	UBTFL1	P0CB47	393 aa	Predicted RBP	11.92	□□□□□ -0.5
YBX3-215	ENST00000544504	RGS19	P49795	217 aa		11.92	□□□□□ -0.5
YBX3-215	ENST00000544504	TCIRG1	Q13488	830 aa		11.92	□□□□□ -0.5
YBX3-215	ENST00000544504	NFIX	Q14938	502 aa		11.92	□□□□□ -0.5

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