RNA–Protein interactions for RNA: ENST00000543590.1

VPS37B-204, Transcript of VPS37B, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS37B, Length 1,457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS37B-204ENST00000543590 NMRK2Q9NPI5 230 aa18.51■□□□□ 0.55
VPS37B-204ENST00000543590 FER1L6Q2WGJ9 1857 aa18.5■□□□□ 0.55
VPS37B-204ENST00000543590 LTBP3Q9NS15 1303 aa18.5■□□□□ 0.55
VPS37B-204ENST00000543590 ZC3H4Q9UPT8 1303 aaKnown RBP18.5■□□□□ 0.55
VPS37B-204ENST00000543590 ANKRD13DQ6ZTN6 518 aa18.5■□□□□ 0.55
VPS37B-204ENST00000543590 NLRP10Q86W26 655 aa18.5■□□□□ 0.55
VPS37B-204ENST00000543590 TAOK3Q9H2K8 898 aa18.5■□□□□ 0.55
VPS37B-204ENST00000543590 KDM2BQ8NHM5 1336 aa18.49■□□□□ 0.55
VPS37B-204ENST00000543590 TSR2Q969E8 191 aaKnown RBP18.49■□□□□ 0.55
VPS37B-204ENST00000543590 CCDC88AQ3V6T2 1871 aa18.49■□□□□ 0.55
VPS37B-204ENST00000543590 ANKRD36CQ5JPF3 1778 aa18.48■□□□□ 0.55
VPS37B-204ENST00000543590 HOXA10P31260 410 aaPredicted RBP18.48■□□□□ 0.55
VPS37B-204ENST00000543590 CCDC93Q567U6 631 aa18.48■□□□□ 0.55
VPS37B-204ENST00000543590 SLC10A5Q5PT55 438 aa18.48■□□□□ 0.55
VPS37B-204ENST00000543590 C3orf67Q6ZVT6 689 aa18.48■□□□□ 0.55
VPS37B-204ENST00000543590 TSPYL6Q8N831 410 aa18.48■□□□□ 0.55
VPS37B-204ENST00000543590 RPGRQ92834 1020 aaKnown RBP18.48■□□□□ 0.55
VPS37B-204ENST00000543590 IL16Q14005 1332 aa18.47■□□□□ 0.55
VPS37B-204ENST00000543590 RNF123Q5XPI4 1314 aa18.47■□□□□ 0.55
VPS37B-204ENST00000543590 OLFM4Q6UX06 510 aa18.47■□□□□ 0.55
VPS37B-204ENST00000543590 FAM9BQ8IZU0 186 aa18.46■□□□□ 0.55
VPS37B-204ENST00000543590 NLRP3Q96P20 1036 aa18.46■□□□□ 0.55
VPS37B-204ENST00000543590 CHMP4AQ9BY43 222 aa18.46■□□□□ 0.55
VPS37B-204ENST00000543590 PHAXQ9H814 394 aaKnown RBP18.46■□□□□ 0.55
VPS37B-204ENST00000543590 TRMT112Q9UI30 125 aaKnown RBP18.46■□□□□ 0.55
VPS37B-204ENST00000543590 SALL2Q9Y467 1007 aaPredicted RBP18.46■□□□□ 0.55
VPS37B-204ENST00000543590 CCDC30Q5VVM6 783 aa18.46■□□□□ 0.54
VPS37B-204ENST00000543590 SYNE4Q8N205 404 aa18.46■□□□□ 0.54
VPS37B-204ENST00000543590 RBM17Q96I25 401 aaKnown RBP18.46■□□□□ 0.54
VPS37B-204ENST00000543590 CRAMP1Q96RY5 1269 aa18.46■□□□□ 0.54
VPS37B-204ENST00000543590 GLTPD2A6NH11 291 aa18.45■□□□□ 0.54
VPS37B-204ENST00000543590 RTKN2Q8IZC4 609 aa18.45■□□□□ 0.54
VPS37B-204ENST00000543590 ISCA1Q9BUE6 129 aa18.45■□□□□ 0.54
VPS37B-204ENST00000543590 RRAGCQ9HB90 399 aa18.45■□□□□ 0.54
VPS37B-204ENST00000543590 TIAM2Q8IVF5 1701 aa18.45■□□□□ 0.54
VPS37B-204ENST00000543590 SH3TC1Q8TE82 1336 aa18.44■□□□□ 0.54
VPS37B-204ENST00000543590 ATP5J2-PTCD1G3V325 749 aa18.44■□□□□ 0.54
VPS37B-204ENST00000543590 TOMM70O94826 608 aa18.44■□□□□ 0.54
VPS37B-204ENST00000543590 HCLS1P14317 486 aaPredicted RBP18.44■□□□□ 0.54
VPS37B-204ENST00000543590 FKBP4Q02790 459 aaKnown RBP eCLIP18.44■□□□□ 0.54
VPS37B-204ENST00000543590 ZNF428Q96B54 188 aa18.44■□□□□ 0.54
VPS37B-204ENST00000543590 DICER1Q9UPY3 1922 aaKnown RBP18.44■□□□□ 0.54
VPS37B-204ENST00000543590 GOLGA2Q08379 1002 aa18.43■□□□□ 0.54
VPS37B-204ENST00000543590 RIC3Q7Z5B4 369 aa18.43■□□□□ 0.54
VPS37B-204ENST00000543590 WDR63Q8IWG1 891 aa18.43■□□□□ 0.54
VPS37B-204ENST00000543590 TWISTNBQ3B726 338 aaPredicted RBP18.42■□□□□ 0.54
VPS37B-204ENST00000543590 CC2D2BQ6DHV5 1058 aa18.42■□□□□ 0.54
VPS37B-204ENST00000543590 DPY19L2Q6NUT2 758 aa18.42■□□□□ 0.54
VPS37B-204ENST00000543590 ZNF277Q9NRM2 450 aaPredicted RBP18.42■□□□□ 0.54
VPS37B-204ENST00000543590 TRIM28Q13263 835 aaKnown RBP18.41■□□□□ 0.54
VPS37B-204ENST00000543590 C16orf71Q8IYS4 520 aaPredicted RBP18.41■□□□□ 0.54
VPS37B-204ENST00000543590 PPEF1O14829 653 aaPredicted RBP18.4■□□□□ 0.54
VPS37B-204ENST00000543590 FAM89AQ96GI7 184 aa18.4■□□□□ 0.54
VPS37B-204ENST00000543590 SNED1Q8TER0 1413 aa18.4■□□□□ 0.54
VPS37B-204ENST00000543590 FANCIQ9NVI1 1328 aa18.4■□□□□ 0.54
VPS37B-204ENST00000543590 TCERG1O14776 1098 aaKnown RBP18.39■□□□□ 0.54
VPS37B-204ENST00000543590 PSMD1Q99460 953 aa18.39■□□□□ 0.54
VPS37B-204ENST00000543590 STK31Q9BXU1 1019 aa18.39■□□□□ 0.54
VPS37B-204ENST00000543590 ABCC4O15439 1325 aa18.39■□□□□ 0.53
VPS37B-204ENST00000543590 DDX58O95786 925 aaKnown RBP18.39■□□□□ 0.53
VPS37B-204ENST00000543590 VEGFAP15692 232 aaPredicted RBP18.39■□□□□ 0.53
VPS37B-204ENST00000543590 HSPA6P17066 643 aa18.39■□□□□ 0.53
VPS37B-204ENST00000543590 SLC51AQ86UW1 340 aa18.39■□□□□ 0.53
VPS37B-204ENST00000543590 RBM46Q8TBY0 533 aaKnown RBP18.39■□□□□ 0.53
VPS37B-204ENST00000543590 MYD88Q99836 296 aa18.39■□□□□ 0.53
VPS37B-204ENST00000543590 LAMB2P55268 1798 aa18.39■□□□□ 0.53
VPS37B-204ENST00000543590 IARSP41252 1262 aaKnown RBP18.38■□□□□ 0.53
VPS37B-204ENST00000543590 GRIPAP1Q4V328 841 aa18.38■□□□□ 0.53
VPS37B-204ENST00000543590 RTL5Q5HYW3 569 aaPredicted RBP18.38■□□□□ 0.53
VPS37B-204ENST00000543590 DDX46Q7L014 1031 aaKnown RBP18.37■□□□□ 0.53
VPS37B-204ENST00000543590 METTL22Q9BUU2 404 aaPredicted RBP18.37■□□□□ 0.53
VPS37B-204ENST00000543590 SPINK5Q9NQ38 1064 aaPredicted RBP18.37■□□□□ 0.53
VPS37B-204ENST00000543590 ATP6V0A2Q9Y487 856 aa18.37■□□□□ 0.53
VPS37B-204ENST00000543590 POTECB2RU33 542 aa18.36■□□□□ 0.53
VPS37B-204ENST00000543590 BBOX1O75936 387 aa18.36■□□□□ 0.53
VPS37B-204ENST00000543590 DDNO94850 711 aaPredicted RBP18.36■□□□□ 0.53
VPS37B-204ENST00000543590 SLC4A2P04920 1241 aa18.36■□□□□ 0.53
VPS37B-204ENST00000543590 ZBTB38Q8NAP3 1195 aaPredicted RBP18.36■□□□□ 0.53
VPS37B-204ENST00000543590 CCDC191Q8NCU4 936 aa18.36■□□□□ 0.53
VPS37B-204ENST00000543590 MAP3K2Q9Y2U5 619 aa18.36■□□□□ 0.53
VPS37B-204ENST00000543590 IRS4O14654 1257 aaPredicted RBP18.35■□□□□ 0.53
VPS37B-204ENST00000543590 EXOSC9Q06265 439 aaKnown RBP18.35■□□□□ 0.53
VPS37B-204ENST00000543590 SF3B3Q15393 1217 aaKnown RBP18.35■□□□□ 0.53
VPS37B-204ENST00000543590 KSR2Q6VAB6 950 aa18.35■□□□□ 0.53
VPS37B-204ENST00000543590 G2E3Q7L622 706 aa18.35■□□□□ 0.53
VPS37B-204ENST00000543590 TMX4Q9H1E5 349 aaPredicted RBP18.35■□□□□ 0.53
VPS37B-204ENST00000543590 DDX60Q8IY21 1712 aaKnown RBP18.35■□□□□ 0.53
VPS37B-204ENST00000543590 WDR90Q96KV7 1748 aa18.35■□□□□ 0.53
VPS37B-204ENST00000543590 PI4KAP2A4QPH2 592 aa18.34■□□□□ 0.53
VPS37B-204ENST00000543590 VAMP4O75379 141 aa18.34■□□□□ 0.53
VPS37B-204ENST00000543590 GRAPQ13588 217 aa18.34■□□□□ 0.53
VPS37B-204ENST00000543590 SP8Q8IXZ3 490 aa18.34■□□□□ 0.53
VPS37B-204ENST00000543590 PI4KAP1Q8N8J0 262 aa18.34■□□□□ 0.53
VPS37B-204ENST00000543590 GRAPLQ8TC17 118 aaPredicted RBP18.34■□□□□ 0.53
VPS37B-204ENST00000543590 FSTL1Q12841 308 aa18.33■□□□□ 0.53
VPS37B-204ENST00000543590 CWC25Q9NXE8 425 aaPredicted RBP18.33■□□□□ 0.53
VPS37B-204ENST00000543590 FZD9O00144 591 aa18.33■□□□□ 0.52
VPS37B-204ENST00000543590 PCCAP05165 728 aaPredicted RBP18.33■□□□□ 0.52
VPS37B-204ENST00000543590 JDP2Q8WYK2 163 aa18.33■□□□□ 0.52
VPS37B-204ENST00000543590 MYH16Q9H6N6 1097 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms