RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 EXOC6BQ9Y2D4 811 aa9.15□□□□□ -0.94
VPS53-205ENST00000541903 AFDNP55196 1824 aaKnown RBP9.15□□□□□ -0.95
VPS53-205ENST00000541903 CDHR2Q9BYE9 1310 aa9.14□□□□□ -0.95
VPS53-205ENST00000541903 APBA3O96018 575 aa9.14□□□□□ -0.95
VPS53-205ENST00000541903 PDE4AP27815 886 aa9.14□□□□□ -0.95
VPS53-205ENST00000541903 RABL6Q3YEC7 729 aaPredicted RBP9.14□□□□□ -0.95
VPS53-205ENST00000541903 CLEC4GQ6UXB4 293 aa9.14□□□□□ -0.95
VPS53-205ENST00000541903 ERC1Q8IUD2 1116 aa9.14□□□□□ -0.95
VPS53-205ENST00000541903 ZNF34Q8IZ26 560 aa9.14□□□□□ -0.95
VPS53-205ENST00000541903 KAZALD1Q96I82 304 aa9.14□□□□□ -0.95
VPS53-205ENST00000541903 LRRCC1Q9C099 1032 aa9.14□□□□□ -0.95
VPS53-205ENST00000541903 C4BP0C0L5 1744 aa9.14□□□□□ -0.95
VPS53-205ENST00000541903 ZPR1O75312 459 aa9.13□□□□□ -0.95
VPS53-205ENST00000541903 ADRA2BP18089 450 aa9.13□□□□□ -0.95
VPS53-205ENST00000541903 TXNRD1Q16881 649 aa9.13□□□□□ -0.95
VPS53-205ENST00000541903 RTL5Q5HYW3 569 aaPredicted RBP9.13□□□□□ -0.95
VPS53-205ENST00000541903 EPHA10Q5JZY3 1008 aa9.13□□□□□ -0.95
VPS53-205ENST00000541903 LRRC4BQ9NT99 713 aa9.13□□□□□ -0.95
VPS53-205ENST00000541903 NARFQ9UHQ1 456 aa9.13□□□□□ -0.95
VPS53-205ENST00000541903 TRMT112Q9UI30 125 aaKnown RBP9.13□□□□□ -0.95
VPS53-205ENST00000541903 NIP7Q9Y221 180 aaKnown RBP eCLIP9.13□□□□□ -0.95
VPS53-205ENST00000541903 NOP58Q9Y2X3 529 aaKnown RBP9.13□□□□□ -0.95
VPS53-205ENST00000541903 CHMP3Q9Y3E7 222 aa9.13□□□□□ -0.95
VPS53-205ENST00000541903 SCN7AQ01118 1682 aa9.13□□□□□ -0.95
VPS53-205ENST00000541903 ANKRD36CQ5JPF3 1778 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 UBN2Q6ZU65 1347 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 PLSCR1O15162 318 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 PHF14O94880 888 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 HSP90B1P14625 803 aaKnown RBP9.12□□□□□ -0.95
VPS53-205ENST00000541903 RFC4P35249 363 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 FOXO4P98177 505 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 G3BP1Q13283 466 aaKnown RBP eCLIP9.12□□□□□ -0.95
VPS53-205ENST00000541903 FAM161AQ3B820 660 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 TRAPPC3LQ5T215 181 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 LMBR1LQ6UX01 489 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 KIF1BPQ96EK5 621 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 FAM89AQ96GI7 184 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 UTP14AQ9BVJ6 771 aaKnown RBP9.12□□□□□ -0.95
VPS53-205ENST00000541903 PLA2G12BQ9BX93 195 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 BCL11AQ9H165 835 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 BCORQ6W2J9 1755 aa9.12□□□□□ -0.95
VPS53-205ENST00000541903 SH3TC1Q8TE82 1336 aa9.11□□□□□ -0.95
VPS53-205ENST00000541903 USP42Q9H9J4 1324 aaKnown RBP9.11□□□□□ -0.95
VPS53-205ENST00000541903 IRS4O14654 1257 aaPredicted RBP9.11□□□□□ -0.95
VPS53-205ENST00000541903 SMARCA5O60264 1052 aaPredicted RBP9.11□□□□□ -0.95
VPS53-205ENST00000541903 SUSD4Q5VX71 490 aa9.11□□□□□ -0.95
VPS53-205ENST00000541903 USPL1Q5W0Q7 1092 aa9.11□□□□□ -0.95
VPS53-205ENST00000541903 RHPN1Q8TCX5 695 aa9.11□□□□□ -0.95
VPS53-205ENST00000541903 COPRSQ9NQ92 184 aa9.11□□□□□ -0.95
VPS53-205ENST00000541903 TSHZ2Q9NRE2 1034 aa9.11□□□□□ -0.95
VPS53-205ENST00000541903 PA2G4Q9UQ80 394 aaKnown RBP9.11□□□□□ -0.95
VPS53-205ENST00000541903 MYH14Q7Z406 1995 aaKnown RBP9.11□□□□□ -0.95
VPS53-205ENST00000541903 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.1□□□□□ -0.95
VPS53-205ENST00000541903 FAM177BA6PVY3 158 aa9.1□□□□□ -0.95
VPS53-205ENST00000541903 PDE8AO60658 829 aa9.1□□□□□ -0.95
VPS53-205ENST00000541903 SSFA2P28290 1259 aa9.1□□□□□ -0.95
VPS53-205ENST00000541903 RFX5P48382 616 aaPredicted RBP9.1□□□□□ -0.95
VPS53-205ENST00000541903 CTSWP56202 376 aa9.1□□□□□ -0.95
VPS53-205ENST00000541903 BICDL1Q6ZP65 573 aa9.1□□□□□ -0.95
VPS53-205ENST00000541903 ARHGEF1Q92888 912 aaKnown RBP9.1□□□□□ -0.95
VPS53-205ENST00000541903 SIL1Q9H173 461 aa9.1□□□□□ -0.95
VPS53-205ENST00000541903 IL1RAPL2Q9NP60 686 aa9.1□□□□□ -0.95
VPS53-205ENST00000541903 SRP68Q9UHB9 627 aaKnown RBP9.1□□□□□ -0.95
VPS53-205ENST00000541903 TAF1LQ8IZX4 1826 aa9.1□□□□□ -0.95
VPS53-205ENST00000541903 TNS1Q9HBL0 1735 aaKnown RBP9.09□□□□□ -0.95
VPS53-205ENST00000541903 NTSR2O95665 410 aa9.09□□□□□ -0.95
VPS53-205ENST00000541903 SF3B2Q13435 895 aaKnown RBP9.09□□□□□ -0.95
VPS53-205ENST00000541903 CCDC57Q2TAC2 916 aa9.09□□□□□ -0.95
VPS53-205ENST00000541903 BMP2KLQ5H9B9 411 aa9.09□□□□□ -0.95
VPS53-205ENST00000541903 TAF7LQ5H9L4 462 aa9.09□□□□□ -0.95
VPS53-205ENST00000541903 TBC1D9BQ66K14 1250 aa9.09□□□□□ -0.95
VPS53-205ENST00000541903 SMIM5Q71RC9 77 aa9.09□□□□□ -0.95
VPS53-205ENST00000541903 AMIGO3Q86WK7 504 aa9.09□□□□□ -0.95
VPS53-205ENST00000541903 PLEKHM2Q8IWE5 1019 aa9.09□□□□□ -0.95
VPS53-205ENST00000541903 C16orf71Q8IYS4 520 aaPredicted RBP9.09□□□□□ -0.95
VPS53-205ENST00000541903 CLASRPQ8N2M8 674 aaKnown RBP9.09□□□□□ -0.95
VPS53-205ENST00000541903 SETDB2Q96T68 719 aa9.09□□□□□ -0.95
VPS53-205ENST00000541903 NYXQ9GZU5 481 aa9.09□□□□□ -0.95
VPS53-205ENST00000541903 BCL2L12Q9HB09 334 aa9.09□□□□□ -0.95
VPS53-205ENST00000541903 NUP98P52948 1817 aa9.08□□□□□ -0.96
VPS53-205ENST00000541903 ANKRD18BA2A2Z9 1011 aa9.08□□□□□ -0.96
VPS53-205ENST00000541903 CSF1RP07333 972 aa9.08□□□□□ -0.96
VPS53-205ENST00000541903 MX1P20591 662 aa9.08□□□□□ -0.96
VPS53-205ENST00000541903 GTF2E1P29083 439 aaPredicted RBP9.08□□□□□ -0.96
VPS53-205ENST00000541903 PTPN12Q05209 780 aaKnown RBP9.08□□□□□ -0.96
VPS53-205ENST00000541903 IFIT5Q13325 482 aaKnown RBP9.08□□□□□ -0.96
VPS53-205ENST00000541903 TTC22Q5TAA0 569 aa9.08□□□□□ -0.96
VPS53-205ENST00000541903 NBPF5PQ86XG9 351 aaPredicted RBP9.08□□□□□ -0.96
VPS53-205ENST00000541903 PROM2Q8N271 834 aa9.08□□□□□ -0.96
VPS53-205ENST00000541903 KLHDC4Q8TBB5 520 aa9.08□□□□□ -0.96
VPS53-205ENST00000541903 OTUD7AQ8TE49 926 aaPredicted RBP9.08□□□□□ -0.96
VPS53-205ENST00000541903 GPATCH3Q96I76 525 aa9.08□□□□□ -0.96
VPS53-205ENST00000541903 CCDC85AQ96PX6 553 aaPredicted RBP9.08□□□□□ -0.96
VPS53-205ENST00000541903 BACH2Q9BYV9 841 aa9.08□□□□□ -0.96
VPS53-205ENST00000541903 TFCP2L1Q9NZI6 479 aa9.08□□□□□ -0.96
VPS53-205ENST00000541903 RGPD3A6NKT7 1758 aaPredicted RBP9.08□□□□□ -0.96
VPS53-205ENST00000541903 RGPD4Q7Z3J3 1758 aa9.08□□□□□ -0.96
VPS53-205ENST00000541903 AOX1Q06278 1338 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 EYA2O00167 538 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 NPHP1O15259 732 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms