RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 SLC39A6Q13433 755 aa12.98□□□□□ -0.33
YBX3-211ENST00000541351 GBA2Q9HCG7 927 aaPredicted RBP12.98□□□□□ -0.33
YBX3-211ENST00000541351 SIN3AQ96ST3 1273 aa12.97□□□□□ -0.33
YBX3-211ENST00000541351 ZIC5Q96T25 663 aa12.97□□□□□ -0.33
YBX3-211ENST00000541351 BCL2L13Q9BXK5 485 aa12.97□□□□□ -0.33
YBX3-211ENST00000541351 AKAP11Q9UKA4 1901 aa12.97□□□□□ -0.33
YBX3-211ENST00000541351 FAM155AB1AL88 458 aaPredicted RBP12.96□□□□□ -0.33
YBX3-211ENST00000541351 RGL2O15211 777 aa12.96□□□□□ -0.33
YBX3-211ENST00000541351 SCN11AQ9UI33 1791 aa12.95□□□□□ -0.34
YBX3-211ENST00000541351 H7C1D1 291 aa12.95□□□□□ -0.34
YBX3-211ENST00000541351 PPIP5K2O43314 1243 aa12.95□□□□□ -0.34
YBX3-211ENST00000541351 CAMTA2O94983 1202 aa12.95□□□□□ -0.34
YBX3-211ENST00000541351 TNIP1Q15025 636 aa12.95□□□□□ -0.34
YBX3-211ENST00000541351 NOM1Q5C9Z4 860 aaKnown RBP12.95□□□□□ -0.34
YBX3-211ENST00000541351 DZIP3Q86Y13 1208 aaKnown RBP12.95□□□□□ -0.34
YBX3-211ENST00000541351 SUPT20HQ8NEM7 779 aa12.95□□□□□ -0.34
YBX3-211ENST00000541351 MRC1P22897 1456 aa12.94□□□□□ -0.34
YBX3-211ENST00000541351 RNMTO43148 476 aaKnown RBP12.94□□□□□ -0.34
YBX3-211ENST00000541351 SLC10A3P09131 477 aa12.94□□□□□ -0.34
YBX3-211ENST00000541351 OLFM4Q6UX06 510 aa12.94□□□□□ -0.34
YBX3-211ENST00000541351 RPGRQ92834 1020 aaKnown RBP12.94□□□□□ -0.34
YBX3-211ENST00000541351 CSRNP1Q96S65 589 aa12.94□□□□□ -0.34
YBX3-211ENST00000541351 ZNRF3Q9ULT6 936 aa12.94□□□□□ -0.34
YBX3-211ENST00000541351 SULT6B1Q6IMI4 303 aa12.93□□□□□ -0.34
YBX3-211ENST00000541351 NPC1L1Q9UHC9 1359 aa12.93□□□□□ -0.34
YBX3-211ENST00000541351 GMPSP49915 693 aaPredicted RBP12.92□□□□□ -0.34
YBX3-211ENST00000541351 KRT26Q7Z3Y9 468 aa12.92□□□□□ -0.34
YBX3-211ENST00000541351 USP48Q86UV5 1035 aa12.92□□□□□ -0.34
YBX3-211ENST00000541351 ZNF296Q8WUU4 475 aaPredicted RBP12.92□□□□□ -0.34
YBX3-211ENST00000541351 DCPSQ96C86 337 aaKnown RBP12.92□□□□□ -0.34
YBX3-211ENST00000541351 NYXQ9GZU5 481 aa12.92□□□□□ -0.34
YBX3-211ENST00000541351 TNNT2P45379 298 aaPredicted RBP12.91□□□□□ -0.34
YBX3-211ENST00000541351 MNX1P50219 401 aaPredicted RBP12.91□□□□□ -0.34
YBX3-211ENST00000541351 CARD14Q9BXL6 1004 aa12.91□□□□□ -0.34
YBX3-211ENST00000541351 LGR6Q9HBX8 967 aa12.91□□□□□ -0.34
YBX3-211ENST00000541351 NIP7Q9Y221 180 aaKnown RBP eCLIP12.91□□□□□ -0.34
YBX3-211ENST00000541351 HEG1Q9ULI3 1381 aa12.91□□□□□ -0.34
YBX3-211ENST00000541351 CXCL9Q07325 125 aa12.9□□□□□ -0.34
YBX3-211ENST00000541351 AEBP1Q8IUX7 1158 aa12.9□□□□□ -0.34
YBX3-211ENST00000541351 FMNL2Q96PY5 1086 aa12.9□□□□□ -0.34
YBX3-211ENST00000541351 COLQQ9Y215 455 aaPredicted RBP12.9□□□□□ -0.34
YBX3-211ENST00000541351 KIF7Q2M1P5 1343 aa12.89□□□□□ -0.35
YBX3-211ENST00000541351 SNED1Q8TER0 1413 aa12.89□□□□□ -0.35
YBX3-211ENST00000541351 FKTNO75072 461 aa12.89□□□□□ -0.35
YBX3-211ENST00000541351 FKBP1BP68106 108 aa12.89□□□□□ -0.35
YBX3-211ENST00000541351 TEFQ10587 303 aa12.89□□□□□ -0.35
YBX3-211ENST00000541351 CRY2Q49AN0 593 aa12.89□□□□□ -0.35
YBX3-211ENST00000541351 RBM17Q96I25 401 aaKnown RBP12.89□□□□□ -0.35
YBX3-211ENST00000541351 CNOT7Q9UIV1 285 aaKnown RBP12.89□□□□□ -0.35
YBX3-211ENST00000541351 GPR25O00155 361 aa12.88□□□□□ -0.35
YBX3-211ENST00000541351 ZNF790Q6PG37 636 aa12.88□□□□□ -0.35
YBX3-211ENST00000541351 SULF1Q8IWU6 871 aa12.88□□□□□ -0.35
YBX3-211ENST00000541351 ZNF496Q96IT1 587 aaPredicted RBP12.88□□□□□ -0.35
YBX3-211ENST00000541351 CUL9Q8IWT3 2517 aa12.87□□□□□ -0.35
YBX3-211ENST00000541351 PPEF1O14829 653 aaPredicted RBP12.87□□□□□ -0.35
YBX3-211ENST00000541351 HOXA10P31260 410 aaPredicted RBP12.87□□□□□ -0.35
YBX3-211ENST00000541351 HIRAP54198 1017 aaPredicted RBP12.87□□□□□ -0.35
YBX3-211ENST00000541351 AOC3Q16853 763 aa12.87□□□□□ -0.35
YBX3-211ENST00000541351 DPF2Q92785 391 aa12.87□□□□□ -0.35
YBX3-211ENST00000541351 CRAMP1Q96RY5 1269 aa12.87□□□□□ -0.35
YBX3-211ENST00000541351 A1BGP04217 495 aa12.86□□□□□ -0.35
YBX3-211ENST00000541351 SREBF2Q12772 1141 aa12.86□□□□□ -0.35
YBX3-211ENST00000541351 TRPM4Q8TD43 1214 aa12.86□□□□□ -0.35
YBX3-211ENST00000541351 TMEM106CQ9BVX2 250 aa12.86□□□□□ -0.35
YBX3-211ENST00000541351 UBR2Q8IWV8 1755 aa12.86□□□□□ -0.35
YBX3-211ENST00000541351 COL4A5P29400 1685 aa12.86□□□□□ -0.35
YBX3-211ENST00000541351 FAM177BA6PVY3 158 aa12.85□□□□□ -0.35
YBX3-211ENST00000541351 TBC1D8O95759 1140 aa12.85□□□□□ -0.35
YBX3-211ENST00000541351 RASAL3Q86YV0 1011 aa12.85□□□□□ -0.35
YBX3-211ENST00000541351 MICALL2Q8IY33 904 aa12.85□□□□□ -0.35
YBX3-211ENST00000541351 PITPNM2Q9BZ72 1349 aa12.85□□□□□ -0.35
YBX3-211ENST00000541351 ALDH1A1P00352 501 aa12.84□□□□□ -0.35
YBX3-211ENST00000541351 POTEFA5A3E0 1075 aa12.83□□□□□ -0.36
YBX3-211ENST00000541351 RAD17O75943 681 aa12.83□□□□□ -0.36
YBX3-211ENST00000541351 RPS12P25398 132 aaKnown RBP12.83□□□□□ -0.36
YBX3-211ENST00000541351 DPP8Q6V1X1 898 aaPredicted RBP12.83□□□□□ -0.36
YBX3-211ENST00000541351 CFHR5Q9BXR6 569 aa12.83□□□□□ -0.36
YBX3-211ENST00000541351 RTFDC1Q9BY42 306 aaPredicted RBP12.83□□□□□ -0.36
YBX3-211ENST00000541351 TRIOBPQ9H2D6 2365 aa12.83□□□□□ -0.36
YBX3-211ENST00000541351 RIC1Q4ADV7 1423 aa12.82□□□□□ -0.36
YBX3-211ENST00000541351 TM4SF4P48230 202 aa12.82□□□□□ -0.36
YBX3-211ENST00000541351 KIAA2012Q0VF49 1180 aa12.82□□□□□ -0.36
YBX3-211ENST00000541351 ATP6V0A2Q9Y487 856 aa12.82□□□□□ -0.36
YBX3-211ENST00000541351 TRIM17Q9Y577 477 aa12.82□□□□□ -0.36
YBX3-211ENST00000541351 ADM5C9JUS6 153 aa12.8□□□□□ -0.36
YBX3-211ENST00000541351 TCERG1O14776 1098 aaKnown RBP12.8□□□□□ -0.36
YBX3-211ENST00000541351 NBPF11Q86T75 865 aa12.8□□□□□ -0.36
YBX3-211ENST00000541351 MPNDQ8N594 471 aa12.8□□□□□ -0.36
YBX3-211ENST00000541351 IBTKQ9P2D0 1353 aaPredicted RBP12.8□□□□□ -0.36
YBX3-211ENST00000541351 KIAA0100Q14667 2235 aaKnown RBP12.79□□□□□ -0.36
YBX3-211ENST00000541351 PRAMEF22A3QJZ6 481 aa12.79□□□□□ -0.36
YBX3-211ENST00000541351 IL13P35225 146 aa12.79□□□□□ -0.36
YBX3-211ENST00000541351 TCIRG1Q13488 830 aa12.79□□□□□ -0.36
YBX3-211ENST00000541351 ARHGEF6Q15052 776 aa12.79□□□□□ -0.36
YBX3-211ENST00000541351 TBC1D10BQ4KMP7 808 aaPredicted RBP12.79□□□□□ -0.36
YBX3-211ENST00000541351 CHRDL2Q6WN34 429 aa12.79□□□□□ -0.36
YBX3-211ENST00000541351 ANKRD13DQ6ZTN6 518 aa12.79□□□□□ -0.36
YBX3-211ENST00000541351 SAMD7Q7Z3H4 446 aa12.79□□□□□ -0.36
YBX3-211ENST00000541351 CDCA5Q96FF9 252 aa12.79□□□□□ -0.36
YBX3-211ENST00000541351 OTUD5Q96G74 571 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms