RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 UTP14AQ9BVJ6 771 aaKnown RBP22.19■■□□□ 1.14
CLSTN3-210ENST00000540931 NOB1Q9ULX3 412 aaKnown RBP22.19■■□□□ 1.14
CLSTN3-210ENST00000540931 CD2APQ9Y5K6 639 aa22.19■■□□□ 1.14
CLSTN3-210ENST00000540931 ADCY9O60503 1353 aa22.19■■□□□ 1.14
CLSTN3-210ENST00000540931 PXDNLA1KZ92 1463 aa22.19■■□□□ 1.14
CLSTN3-210ENST00000540931 ARFGEF2Q9Y6D5 1785 aa22.18■■□□□ 1.14
CLSTN3-210ENST00000540931 CCT4P50991 539 aaKnown RBP22.18■■□□□ 1.14
CLSTN3-210ENST00000540931 ATF7IPQ6VMQ6 1270 aa22.18■■□□□ 1.14
CLSTN3-210ENST00000540931 MYD88Q99836 296 aa22.18■■□□□ 1.14
CLSTN3-210ENST00000540931 CWC25Q9NXE8 425 aaPredicted RBP22.18■■□□□ 1.14
CLSTN3-210ENST00000540931 ANKRD36CQ5JPF3 1778 aa22.17■■□□□ 1.14
CLSTN3-210ENST00000540931 NLRP10Q86W26 655 aa22.17■■□□□ 1.14
CLSTN3-210ENST00000540931 SRCIN1Q9C0H9 1055 aa22.17■■□□□ 1.14
CLSTN3-210ENST00000540931 BCAR3O75815 825 aa22.16■■□□□ 1.14
CLSTN3-210ENST00000540931 FRAT1Q92837 279 aaPredicted RBP22.16■■□□□ 1.14
CLSTN3-210ENST00000540931 SH3TC1Q8TE82 1336 aa22.15■■□□□ 1.14
CLSTN3-210ENST00000540931 GPTP24298 496 aa22.15■■□□□ 1.14
CLSTN3-210ENST00000540931 PDE6BP35913 854 aa22.15■■□□□ 1.14
CLSTN3-210ENST00000540931 DDR1Q08345 913 aa22.15■■□□□ 1.14
CLSTN3-210ENST00000540931 ZBTB38Q8NAP3 1195 aaPredicted RBP22.15■■□□□ 1.14
CLSTN3-210ENST00000540931 BRIP1Q9BX63 1249 aa22.15■■□□□ 1.14
CLSTN3-210ENST00000540931 TRMT112Q9UI30 125 aaKnown RBP22.15■■□□□ 1.14
CLSTN3-210ENST00000540931 TGFB2P61812 414 aa22.14■■□□□ 1.13
CLSTN3-210ENST00000540931 BEND3Q5T5X7 828 aa22.14■■□□□ 1.13
CLSTN3-210ENST00000540931 SLC4A10Q6U841 1118 aa22.14■■□□□ 1.13
CLSTN3-210ENST00000540931 CHMP4BQ9H444 224 aaKnown RBP22.14■■□□□ 1.13
CLSTN3-210ENST00000540931 RIC1Q4ADV7 1423 aa22.14■■□□□ 1.13
CLSTN3-210ENST00000540931 UBN2Q6ZU65 1347 aa22.13■■□□□ 1.13
CLSTN3-210ENST00000540931 NEURL1BA8MQ27 555 aa22.13■■□□□ 1.13
CLSTN3-210ENST00000540931 PCCAP05165 728 aaPredicted RBP22.13■■□□□ 1.13
CLSTN3-210ENST00000540931 FTSJ3Q8IY81 847 aaKnown RBP22.13■■□□□ 1.13
CLSTN3-210ENST00000540931 CEP350Q5VT06 3117 aa22.13■■□□□ 1.13
CLSTN3-210ENST00000540931 NRXN2Q9P2S2 1712 aa22.13■■□□□ 1.13
CLSTN3-210ENST00000540931 ATP5J2-PTCD1G3V325 749 aa22.12■■□□□ 1.13
CLSTN3-210ENST00000540931 SLC10A5Q5PT55 438 aa22.12■■□□□ 1.13
CLSTN3-210ENST00000540931 SUSD4Q5VX71 490 aa22.12■■□□□ 1.13
CLSTN3-210ENST00000540931 PRR5LQ6MZQ0 368 aa22.12■■□□□ 1.13
CLSTN3-210ENST00000540931 F6X3S4 739 aa22.11■■□□□ 1.13
CLSTN3-210ENST00000540931 NTSR2O95665 410 aa22.11■■□□□ 1.13
CLSTN3-210ENST00000540931 GCKRQ14397 625 aa22.11■■□□□ 1.13
CLSTN3-210ENST00000540931 IGKV5-2P06315 115 aa22.1■■□□□ 1.13
CLSTN3-210ENST00000540931 TRIM27P14373 513 aa22.1■■□□□ 1.13
CLSTN3-210ENST00000540931 IFFO2Q5TF58 517 aa22.1■■□□□ 1.13
CLSTN3-210ENST00000540931 INTS3Q68E01 1043 aaKnown RBP22.1■■□□□ 1.13
CLSTN3-210ENST00000540931 C10orf71Q711Q0 1435 aa22.1■■□□□ 1.13
CLSTN3-210ENST00000540931 DZIP1LQ8IYY4 767 aaKnown RBP22.1■■□□□ 1.13
CLSTN3-210ENST00000540931 NLRP3Q96P20 1036 aa22.1■■□□□ 1.13
CLSTN3-210ENST00000540931 C9orf78Q9NZ63 289 aaPredicted RBP22.1■■□□□ 1.13
CLSTN3-210ENST00000540931 ABCC4O15439 1325 aa22.09■■□□□ 1.13
CLSTN3-210ENST00000540931 CDHR2Q9BYE9 1310 aa22.09■■□□□ 1.13
CLSTN3-210ENST00000540931 PDE3AQ14432 1141 aa22.09■■□□□ 1.13
CLSTN3-210ENST00000540931 FAM177BA6PVY3 158 aa22.07■■□□□ 1.12
CLSTN3-210ENST00000540931 H0YIN7 160 aa22.07■■□□□ 1.12
CLSTN3-210ENST00000540931 H7C1W4 665 aa22.07■■□□□ 1.12
CLSTN3-210ENST00000540931 GRM8O00222 908 aa22.07■■□□□ 1.12
CLSTN3-210ENST00000540931 CWF19L2Q2TBE0 894 aaKnown RBP22.07■■□□□ 1.12
CLSTN3-210ENST00000540931 AFDNP55196 1824 aaKnown RBP22.07■■□□□ 1.12
CLSTN3-210ENST00000540931 KLRG2A4D1S0 409 aaPredicted RBP22.06■■□□□ 1.12
CLSTN3-210ENST00000540931 CENPBP07199 599 aaPredicted RBP22.06■■□□□ 1.12
CLSTN3-210ENST00000540931 IRS4O14654 1257 aaPredicted RBP22.05■■□□□ 1.12
CLSTN3-210ENST00000540931 PDE8AO60658 829 aa22.05■■□□□ 1.12
CLSTN3-210ENST00000540931 GNAI3P08754 354 aa22.05■■□□□ 1.12
CLSTN3-210ENST00000540931 ERFEQ4G0M1 354 aa22.05■■□□□ 1.12
CLSTN3-210ENST00000540931 KIF13BQ9NQT8 1826 aa22.05■■□□□ 1.12
CLSTN3-210ENST00000540931 UTYO14607 1347 aa22.05■■□□□ 1.12
CLSTN3-210ENST00000540931 ALDH1B1P30837 517 aa22.04■■□□□ 1.12
CLSTN3-210ENST00000540931 FAM89AQ96GI7 184 aa22.04■■□□□ 1.12
CLSTN3-210ENST00000540931 PLA2G12BQ9BX93 195 aa22.04■■□□□ 1.12
CLSTN3-210ENST00000540931 N4BP2Q86UW6 1770 aaPredicted RBP22.03■■□□□ 1.12
CLSTN3-210ENST00000540931 NUTM1Q86Y26 1132 aa22.03■■□□□ 1.12
CLSTN3-210ENST00000540931 GPBP1L1Q9HC44 474 aaPredicted RBP22.03■■□□□ 1.12
CLSTN3-210ENST00000540931 NPR1P16066 1061 aa22.02■■□□□ 1.12
CLSTN3-210ENST00000540931 UBE3BQ7Z3V4 1068 aa22.02■■□□□ 1.12
CLSTN3-210ENST00000540931 RPGRQ92834 1020 aaKnown RBP22.02■■□□□ 1.12
CLSTN3-210ENST00000540931 CNKSR1Q969H4 720 aa22.02■■□□□ 1.12
CLSTN3-210ENST00000540931 MASTLQ96GX5 879 aa22.02■■□□□ 1.12
CLSTN3-210ENST00000540931 SF3B3Q15393 1217 aaKnown RBP22.01■■□□□ 1.11
CLSTN3-210ENST00000540931 CRY2Q49AN0 593 aa22.01■■□□□ 1.11
CLSTN3-210ENST00000540931 CCDC152Q4G0S7 254 aa22.01■■□□□ 1.11
CLSTN3-210ENST00000540931 STYK1Q6J9G0 422 aa22.01■■□□□ 1.11
CLSTN3-210ENST00000540931 CLUAP1Q96AJ1 413 aa22.01■■□□□ 1.11
CLSTN3-210ENST00000540931 DDX19BQ9UMR2 479 aa22.01■■□□□ 1.11
CLSTN3-210ENST00000540931 UBTFL1P0CB47 393 aaPredicted RBP22■■□□□ 1.11
CLSTN3-210ENST00000540931 C2CD5Q86YS7 1000 aa22■■□□□ 1.11
CLSTN3-210ENST00000540931 RBM17Q96I25 401 aaKnown RBP22■■□□□ 1.11
CLSTN3-210ENST00000540931 PIM2Q9P1W9 311 aa22■■□□□ 1.11
CLSTN3-210ENST00000540931 SRGNP10124 158 aa21.99■■□□□ 1.11
CLSTN3-210ENST00000540931 HOXA10P31260 410 aaPredicted RBP21.99■■□□□ 1.11
CLSTN3-210ENST00000540931 RRP1P56182 461 aaKnown RBP21.99■■□□□ 1.11
CLSTN3-210ENST00000540931 TMC4Q7Z404 712 aa21.99■■□□□ 1.11
CLSTN3-210ENST00000540931 USP44Q9H0E7 712 aa21.99■■□□□ 1.11
CLSTN3-210ENST00000540931 GRIPAP1Q4V328 841 aa21.98■■□□□ 1.11
CLSTN3-210ENST00000540931 DDX46Q7L014 1031 aaKnown RBP21.98■■□□□ 1.11
CLSTN3-210ENST00000540931 ITPRIPQ8IWB1 547 aa21.98■■□□□ 1.11
CLSTN3-210ENST00000540931 CRAMP1Q96RY5 1269 aa21.98■■□□□ 1.11
CLSTN3-210ENST00000540931 TMX4Q9H1E5 349 aaPredicted RBP21.98■■□□□ 1.11
CLSTN3-210ENST00000540931 HCLS1P14317 486 aaPredicted RBP21.97■■□□□ 1.11
CLSTN3-210ENST00000540931 HSPA6P17066 643 aa21.97■■□□□ 1.11
CLSTN3-210ENST00000540931 CASP7P55210 303 aa21.97■■□□□ 1.11
CLSTN3-210ENST00000540931 AAMPQ13685 434 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms