RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 BLOC1S2Q6QNY1 142 aa15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 HOMER1Q86YM7 354 aa15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 CLASRPQ8N2M8 674 aaKnown RBP15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 LEO1Q8WVC0 666 aaPredicted RBP15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 BMS1Q14692 1282 aaKnown RBP15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 KLHL34Q8N239 644 aa15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 PI4K2BQ8TCG2 481 aa15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 SYTL4Q96C24 671 aaPredicted RBP15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 TPCN1Q9ULQ1 816 aa15.12■□□□□ 0.01
SFSWAP-209ENST00000540469 DIP2BQ9P265 1576 aa15.11■□□□□ 0.01
SFSWAP-209ENST00000540469 WASLO00401 505 aaPredicted RBP15.11■□□□□ 0.01
SFSWAP-209ENST00000540469 IFIT2P09913 472 aaKnown RBP15.11■□□□□ 0.01
SFSWAP-209ENST00000540469 EIF2S2P20042 333 aaKnown RBP15.11■□□□□ 0.01
SFSWAP-209ENST00000540469 PSMA5P28066 241 aa15.11■□□□□ 0.01
SFSWAP-209ENST00000540469 TNNT3P45378 269 aaPredicted RBP15.11■□□□□ 0.01
SFSWAP-209ENST00000540469 LARP1Q6PKG0 1096 aaKnown RBP15.11■□□□□ 0.01
SFSWAP-209ENST00000540469 USP44Q9H0E7 712 aa15.11■□□□□ 0.01
SFSWAP-209ENST00000540469 KIDINS220Q9ULH0 1771 aa15.11■□□□□ 0.01
SFSWAP-209ENST00000540469 POLR3GO15318 223 aaPredicted RBP15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 TXNDC2Q86VQ3 553 aa15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 RBM8AQ9Y5S9 174 aaKnown RBP15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 SNW1Q13573 536 aaKnown RBP15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 MTHFSDQ2M296 383 aaKnown RBP15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 CHMP4CQ96CF2 233 aa15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 DNAJC2Q99543 621 aaKnown RBP15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 CCDC61Q9Y6R9 512 aa15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 ELP1O95163 1332 aa15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 ERCC6LQ2NKX8 1250 aa15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 TEX35Q5T0J7 233 aa15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 CCDC73Q6ZRK6 1079 aa15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 IL17RAQ96F46 866 aa15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 ZSWIM6Q9HCJ5 1215 aa15.1■□□□□ 0.01
SFSWAP-209ENST00000540469 DDX11Q96FC9 970 aa15.09■□□□□ 0.01
SFSWAP-209ENST00000540469 AATKQ6ZMQ8 1374 aa15.09■□□□□ 0.01
SFSWAP-209ENST00000540469 HSP90AB4PQ58FF6 505 aa15.09■□□□□ 0.01
SFSWAP-209ENST00000540469 HDGFL1Q5TGJ6 251 aa15.09■□□□□ 0.01
SFSWAP-209ENST00000540469 RNF20Q5VTR2 975 aa15.09■□□□□ 0.01
SFSWAP-209ENST00000540469 ATP7BP35670 1465 aa15.09■□□□□ 0.01
SFSWAP-209ENST00000540469 SSH3Q8TE77 659 aa15.09■□□□□ 0.01
SFSWAP-209ENST00000540469 A0A087WWV3 80 aa15.08■□□□□ 0.01
SFSWAP-209ENST00000540469 KINO60870 393 aaKnown RBP15.08■□□□□ 0.01
SFSWAP-209ENST00000540469 TRIM34Q9BYJ4 488 aa15.08■□□□□ 0.01
SFSWAP-209ENST00000540469 ARGLU1Q9NWB6 273 aaPredicted RBP15.08■□□□□ 0.01
SFSWAP-209ENST00000540469 SMC2O95347 1197 aa15.08■□□□□ 0
SFSWAP-209ENST00000540469 CAVIN2O95810 425 aa15.08■□□□□ 0
SFSWAP-209ENST00000540469 STX1AQ16623 288 aa15.08■□□□□ 0
SFSWAP-209ENST00000540469 CREB3L3Q68CJ9 461 aa15.08■□□□□ 0
SFSWAP-209ENST00000540469 FRMPD1Q5SYB0 1578 aa15.08■□□□□ 0
SFSWAP-209ENST00000540469 KIF2AO00139 706 aaPredicted RBP15.08■□□□□ 0
SFSWAP-209ENST00000540469 RBM6P78332 1123 aaKnown RBP15.08■□□□□ 0
SFSWAP-209ENST00000540469 ANKRD1Q15327 319 aa15.08■□□□□ 0
SFSWAP-209ENST00000540469 C11orf57Q6ZUT1 292 aaPredicted RBP15.08■□□□□ 0
SFSWAP-209ENST00000540469 MNS1Q8NEH6 495 aa15.08■□□□□ 0
SFSWAP-209ENST00000540469 SYT10Q6XYQ8 523 aa15.07■□□□□ 0
SFSWAP-209ENST00000540469 FMNL2Q96PY5 1086 aa15.07■□□□□ 0
SFSWAP-209ENST00000540469 ARHGAP29Q52LW3 1261 aa15.07■□□□□ 0
SFSWAP-209ENST00000540469 CCAR2Q8N163 923 aaKnown RBP15.07■□□□□ 0
SFSWAP-209ENST00000540469 ST3GAL1Q11201 340 aa15.06■□□□□ 0
SFSWAP-209ENST00000540469 CEP57L1Q8IYX8 460 aa15.06■□□□□ 0
SFSWAP-209ENST00000540469 TM6SF1Q9BZW5 370 aa15.06■□□□□ 0
SFSWAP-209ENST00000540469 TMCO3Q6UWJ1 677 aa15.06■□□□□ 0
SFSWAP-209ENST00000540469 UBXN4Q92575 508 aa15.06■□□□□ 0
SFSWAP-209ENST00000540469 PHAXQ9H814 394 aaKnown RBP15.06■□□□□ 0
SFSWAP-209ENST00000540469 CFAP45Q9UL16 551 aa15.06■□□□□ 0
SFSWAP-209ENST00000540469 AMPHP49418 695 aa15.06■□□□□ 0
SFSWAP-209ENST00000540469 AOPEPQ8N6M6 819 aa15.06■□□□□ 0
SFSWAP-209ENST00000540469 ECHDC1Q9NTX5 307 aa15.06■□□□□ 0
SFSWAP-209ENST00000540469 CDC25BP30305 580 aa15.05■□□□□ 0
SFSWAP-209ENST00000540469 BRF1Q92994 677 aa15.05■□□□□ 0
SFSWAP-209ENST00000540469 MRFAP1L1Q96HT8 127 aa15.05■□□□□ 0
SFSWAP-209ENST00000540469 SDF4Q9BRK5 362 aa15.05■□□□□ 0
SFSWAP-209ENST00000540469 FSD1Q9BTV5 496 aa15.05■□□□□ 0
SFSWAP-209ENST00000540469 AACSQ86V21 672 aa15.05■□□□□ -0
SFSWAP-209ENST00000540469 CCAR1Q8IX12 1150 aaKnown RBP15.05■□□□□ -0
SFSWAP-209ENST00000540469 ERCC4Q92889 916 aaPredicted RBP15.05■□□□□ -0
SFSWAP-209ENST00000540469 PGBD1Q96JS3 809 aa15.05■□□□□ -0
SFSWAP-209ENST00000540469 NEO1Q92859 1461 aa15.05■□□□□ -0
SFSWAP-209ENST00000540469 NBPF7P0C2Y1 421 aaPredicted RBP15.05■□□□□ -0
SFSWAP-209ENST00000540469 FAM227BQ96M60 508 aa15.05■□□□□ -0
SFSWAP-209ENST00000540469 ANO10Q9NW15 660 aa15.05■□□□□ -0
SFSWAP-209ENST00000540469 TTC21AQ8NDW8 1320 aa15.05■□□□□ -0
SFSWAP-209ENST00000540469 JAK2O60674 1132 aa15.04■□□□□ -0
SFSWAP-209ENST00000540469 GNL2Q13823 731 aaKnown RBP15.04■□□□□ -0
SFSWAP-209ENST00000540469 NAT10Q9H0A0 1025 aaKnown RBP15.04■□□□□ -0
SFSWAP-209ENST00000540469 SFPQP23246 707 aaKnown RBP eCLIP15.04■□□□□ -0
SFSWAP-209ENST00000540469 HNRNPH2P55795 449 aaKnown RBP15.04■□□□□ -0
SFSWAP-209ENST00000540469 GSDMDP57764 484 aa15.04■□□□□ -0
SFSWAP-209ENST00000540469 TAF7Q15545 349 aaPredicted RBP15.04■□□□□ -0
SFSWAP-209ENST00000540469 NYAP1Q6ZVC0 841 aa15.04■□□□□ -0
SFSWAP-209ENST00000540469 MAP3K19Q56UN5 1328 aa15.04■□□□□ -0
SFSWAP-209ENST00000540469 ME1P48163 572 aa15.04■□□□□ -0
SFSWAP-209ENST00000540469 TPM4P67936 248 aa15.04■□□□□ -0
SFSWAP-209ENST00000540469 TMC6Q7Z403 805 aa15.04■□□□□ -0
SFSWAP-209ENST00000540469 TMX1Q9H3N1 280 aa15.04■□□□□ -0
SFSWAP-209ENST00000540469 CRB1P82279 1406 aa15.04■□□□□ -0
SFSWAP-209ENST00000540469 C9orf78Q9NZ63 289 aaPredicted RBP15.03■□□□□ -0
SFSWAP-209ENST00000540469 HECW2Q9P2P5 1572 aa15.03■□□□□ -0
SFSWAP-209ENST00000540469 TTC41PQ6P2S7 1318 aa15.03■□□□□ -0
SFSWAP-209ENST00000540469 SLC27A2O14975 620 aa15.03■□□□□ -0
SFSWAP-209ENST00000540469 NMIQ13287 307 aaPredicted RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms