RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 GLIS2Q9BZE0 524 aaPredicted RBP16.27■□□□□ 0.2
YBX3-207ENST00000539204 ZNF408Q9H9D4 720 aa16.27■□□□□ 0.2
YBX3-207ENST00000539204 GPRC5DQ9NZD1 345 aa16.27■□□□□ 0.2
YBX3-207ENST00000539204 TRPM7Q96QT4 1865 aa16.27■□□□□ 0.19
YBX3-207ENST00000539204 LTBP1Q14766 1721 aa16.26■□□□□ 0.19
YBX3-207ENST00000539204 RGL2O15211 777 aa16.26■□□□□ 0.19
YBX3-207ENST00000539204 DIAPH1O60610 1272 aaKnown RBP16.26■□□□□ 0.19
YBX3-207ENST00000539204 KCNQ3O43525 872 aa16.25■□□□□ 0.19
YBX3-207ENST00000539204 CRY2Q49AN0 593 aa16.25■□□□□ 0.19
YBX3-207ENST00000539204 GAS2L2Q8NHY3 880 aa16.25■□□□□ 0.19
YBX3-207ENST00000539204 PGAP2Q9UHJ9 254 aa16.25■□□□□ 0.19
YBX3-207ENST00000539204 CDC37L1Q7L3B6 337 aa16.24■□□□□ 0.19
YBX3-207ENST00000539204 ZC3H15Q8WU90 426 aaKnown RBP16.24■□□□□ 0.19
YBX3-207ENST00000539204 RPGRQ92834 1020 aaKnown RBP16.24■□□□□ 0.19
YBX3-207ENST00000539204 ZIC5Q96T25 663 aa16.24■□□□□ 0.19
YBX3-207ENST00000539204 SNRPA1P09661 255 aaKnown RBP16.23■□□□□ 0.19
YBX3-207ENST00000539204 HLFQ16534 295 aa16.23■□□□□ 0.19
YBX3-207ENST00000539204 NYXQ9GZU5 481 aa16.23■□□□□ 0.19
YBX3-207ENST00000539204 TMX4Q9H1E5 349 aaPredicted RBP16.23■□□□□ 0.19
YBX3-207ENST00000539204 VPS33BQ9H267 617 aa16.23■□□□□ 0.19
YBX3-207ENST00000539204 SNED1Q8TER0 1413 aa16.22■□□□□ 0.19
YBX3-207ENST00000539204 TCERG1O14776 1098 aaKnown RBP16.22■□□□□ 0.19
YBX3-207ENST00000539204 PPIP5K2O43314 1243 aa16.22■□□□□ 0.19
YBX3-207ENST00000539204 HOXA10P31260 410 aaPredicted RBP16.22■□□□□ 0.19
YBX3-207ENST00000539204 HUNKP57058 714 aa16.22■□□□□ 0.19
YBX3-207ENST00000539204 RBM17Q96I25 401 aaKnown RBP16.22■□□□□ 0.19
YBX3-207ENST00000539204 SAGE1Q9NXZ1 904 aa16.22■□□□□ 0.19
YBX3-207ENST00000539204 ZNRF3Q9ULT6 936 aa16.22■□□□□ 0.19
YBX3-207ENST00000539204 COL4A5P29400 1685 aa16.21■□□□□ 0.19
YBX3-207ENST00000539204 PRAMEF22A3QJZ6 481 aa16.21■□□□□ 0.19
YBX3-207ENST00000539204 CXCL9Q07325 125 aa16.21■□□□□ 0.19
YBX3-207ENST00000539204 NUTM1Q86Y26 1132 aa16.21■□□□□ 0.19
YBX3-207ENST00000539204 NBPF26B4DH59 902 aa16.2■□□□□ 0.18
YBX3-207ENST00000539204 GMPSP49915 693 aaPredicted RBP16.2■□□□□ 0.18
YBX3-207ENST00000539204 HIRAP54198 1017 aaPredicted RBP16.2■□□□□ 0.18
YBX3-207ENST00000539204 AOC3Q16853 763 aa16.2■□□□□ 0.18
YBX3-207ENST00000539204 NBPF10Q6P3W6 841 aaKnown RBP16.2■□□□□ 0.18
YBX3-207ENST00000539204 NBPF15Q8N660 670 aa16.2■□□□□ 0.18
YBX3-207ENST00000539204 CRAMP1Q96RY5 1269 aa16.2■□□□□ 0.18
YBX3-207ENST00000539204 BCL2L13Q9BXK5 485 aa16.2■□□□□ 0.18
YBX3-207ENST00000539204 NPC1L1Q9UHC9 1359 aa16.2■□□□□ 0.18
YBX3-207ENST00000539204 BCORQ6W2J9 1755 aa16.19■□□□□ 0.18
YBX3-207ENST00000539204 PPEF1O14829 653 aaPredicted RBP16.19■□□□□ 0.18
YBX3-207ENST00000539204 TRPA1O75762 1119 aa16.19■□□□□ 0.18
YBX3-207ENST00000539204 RGMBQ6NW40 437 aa16.19■□□□□ 0.18
YBX3-207ENST00000539204 USP48Q86UV5 1035 aa16.19■□□□□ 0.18
YBX3-207ENST00000539204 CCDC102AQ96A19 550 aa16.19■□□□□ 0.18
YBX3-207ENST00000539204 RNF186Q9NXI6 227 aa16.19■□□□□ 0.18
YBX3-207ENST00000539204 KIF7Q2M1P5 1343 aa16.19■□□□□ 0.18
YBX3-207ENST00000539204 U2SURPO15042 1029 aaKnown RBP16.18■□□□□ 0.18
YBX3-207ENST00000539204 KIF23Q02241 960 aaPredicted RBP16.18■□□□□ 0.18
YBX3-207ENST00000539204 TNIP1Q15025 636 aa16.18■□□□□ 0.18
YBX3-207ENST00000539204 TIMELESSQ9UNS1 1208 aa16.18■□□□□ 0.18
YBX3-207ENST00000539204 CEMIPQ8WUJ3 1361 aa16.17■□□□□ 0.18
YBX3-207ENST00000539204 EIF4G2P78344 907 aaKnown RBP eCLIP16.17■□□□□ 0.18
YBX3-207ENST00000539204 AMER1Q5JTC6 1135 aaPredicted RBP16.17■□□□□ 0.18
YBX3-207ENST00000539204 CTU1Q7Z7A3 348 aaKnown RBP16.17■□□□□ 0.18
YBX3-207ENST00000539204 C2orf69Q8N8R5 385 aa16.17■□□□□ 0.18
YBX3-207ENST00000539204 SUPT20HQ8NEM7 779 aa16.17■□□□□ 0.18
YBX3-207ENST00000539204 GCC1Q96CN9 775 aa16.17■□□□□ 0.18
YBX3-207ENST00000539204 CNOT7Q9UIV1 285 aaKnown RBP16.17■□□□□ 0.18
YBX3-207ENST00000539204 FAM155AB1AL88 458 aaPredicted RBP16.16■□□□□ 0.18
YBX3-207ENST00000539204 H7C1D1 291 aa16.16■□□□□ 0.18
YBX3-207ENST00000539204 CDHR2Q9BYE9 1310 aa16.16■□□□□ 0.18
YBX3-207ENST00000539204 ERVV-1B6SEH8 477 aa16.15■□□□□ 0.18
YBX3-207ENST00000539204 RAD17O75943 681 aa16.15■□□□□ 0.18
YBX3-207ENST00000539204 ZNF157P51786 506 aaPredicted RBP16.15■□□□□ 0.18
YBX3-207ENST00000539204 NGEFQ8N5V2 710 aa16.15■□□□□ 0.18
YBX3-207ENST00000539204 TRPM4Q8TD43 1214 aa16.15■□□□□ 0.18
YBX3-207ENST00000539204 ATP6V0A2Q9Y487 856 aa16.15■□□□□ 0.18
YBX3-207ENST00000539204 ABCC12Q96J65 1359 aa16.14■□□□□ 0.17
YBX3-207ENST00000539204 HSPA5P11021 654 aaKnown RBP16.14■□□□□ 0.17
YBX3-207ENST00000539204 SLC51AQ86UW1 340 aa16.14■□□□□ 0.17
YBX3-207ENST00000539204 GBA2Q9HCG7 927 aaPredicted RBP16.14■□□□□ 0.17
YBX3-207ENST00000539204 HPS5Q9UPZ3 1129 aa16.14■□□□□ 0.17
YBX3-207ENST00000539204 DLK2Q6UY11 383 aa16.13■□□□□ 0.17
YBX3-207ENST00000539204 RTF1Q92541 710 aaKnown RBP16.13■□□□□ 0.17
YBX3-207ENST00000539204 PHACTR3Q96KR7 559 aa16.13■□□□□ 0.17
YBX3-207ENST00000539204 NLRP3Q96P20 1036 aa16.13■□□□□ 0.17
YBX3-207ENST00000539204 CSRNP1Q96S65 589 aa16.13■□□□□ 0.17
YBX3-207ENST00000539204 RTFDC1Q9BY42 306 aaPredicted RBP16.13■□□□□ 0.17
YBX3-207ENST00000539204 GPTP24298 496 aa16.12■□□□□ 0.17
YBX3-207ENST00000539204 PKN2Q16513 984 aaKnown RBP16.12■□□□□ 0.17
YBX3-207ENST00000539204 SUSD4Q5VX71 490 aa16.12■□□□□ 0.17
YBX3-207ENST00000539204 DPP8Q6V1X1 898 aaPredicted RBP16.12■□□□□ 0.17
YBX3-207ENST00000539204 KRT26Q7Z3Y9 468 aa16.12■□□□□ 0.17
YBX3-207ENST00000539204 REM2Q8IYK8 340 aaPredicted RBP16.12■□□□□ 0.17
YBX3-207ENST00000539204 SIPA1L3O60292 1781 aaPredicted RBP16.12■□□□□ 0.17
YBX3-207ENST00000539204 BBOX1O75936 387 aa16.11■□□□□ 0.17
YBX3-207ENST00000539204 KIAA2012Q0VF49 1180 aa16.11■□□□□ 0.17
YBX3-207ENST00000539204 KIF6Q6ZMV9 814 aa16.11■□□□□ 0.17
YBX3-207ENST00000539204 MPNDQ8N594 471 aa16.11■□□□□ 0.17
YBX3-207ENST00000539204 SHTN1A0MZ66 631 aa16.1■□□□□ 0.17
YBX3-207ENST00000539204 SP8Q8IXZ3 490 aa16.1■□□□□ 0.17
YBX3-207ENST00000539204 MICALL2Q8IY33 904 aa16.1■□□□□ 0.17
YBX3-207ENST00000539204 DCPSQ96C86 337 aaKnown RBP16.1■□□□□ 0.17
YBX3-207ENST00000539204 HDAC9Q9UKV0 1011 aa16.1■□□□□ 0.17
YBX3-207ENST00000539204 MAP3K15Q6ZN16 1313 aa16.1■□□□□ 0.17
YBX3-207ENST00000539204 CC2D1BQ5T0F9 858 aaKnown RBP16.09■□□□□ 0.17
YBX3-207ENST00000539204 C3orf67Q6ZVT6 689 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms