RNA–Protein interactions for RNA: ENST00000538828.1

CLTCL1-205, Transcript of clathrin heavy chain like 1, human

TSL 5

Gene CLTCL1, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLTCL1-205	ENST00000538828	PRPF40B	Q6NWY9	871 aa	Known RBP	15.86	■□□□□ 0.13
CLTCL1-205	ENST00000538828	CCDC24	Q8N4L8	307 aa		15.86	■□□□□ 0.13
CLTCL1-205	ENST00000538828	CRAMP1	Q96RY5	1269 aa		15.86	■□□□□ 0.13
CLTCL1-205	ENST00000538828	MYH16	Q9H6N6	1097 aa		15.86	■□□□□ 0.13
CLTCL1-205	ENST00000538828	SLX4	Q8IY92	1834 aa		15.86	■□□□□ 0.13
CLTCL1-205	ENST00000538828	ZNF521	Q96K83	1311 aa		15.86	■□□□□ 0.13
CLTCL1-205	ENST00000538828	ABCC12	Q96J65	1359 aa		15.86	■□□□□ 0.13
CLTCL1-205	ENST00000538828	DDX58	O95786	925 aa	Known RBP	15.85	■□□□□ 0.13
CLTCL1-205	ENST00000538828	TWISTNB	Q3B726	338 aa	Predicted RBP	15.85	■□□□□ 0.13
CLTCL1-205	ENST00000538828	C9orf131	Q5VYM1	1079 aa		15.85	■□□□□ 0.13
CLTCL1-205	ENST00000538828	TSPYL6	Q8N831	410 aa		15.85	■□□□□ 0.13
CLTCL1-205	ENST00000538828	NLRP3	Q96P20	1036 aa		15.85	■□□□□ 0.13
CLTCL1-205	ENST00000538828	STK31	Q9BXU1	1019 aa		15.85	■□□□□ 0.13
CLTCL1-205	ENST00000538828	NFKBIE	O00221	500 aa		15.84	■□□□□ 0.13
CLTCL1-205	ENST00000538828	ELL2	O00472	640 aa	Predicted RBP	15.84	■□□□□ 0.13
CLTCL1-205	ENST00000538828	HSP90B1	P14625	803 aa	Known RBP	15.84	■□□□□ 0.13
CLTCL1-205	ENST00000538828	NUTM1	Q86Y26	1132 aa		15.84	■□□□□ 0.13
CLTCL1-205	ENST00000538828	TSR2	Q969E8	191 aa	Known RBP	15.84	■□□□□ 0.13
CLTCL1-205	ENST00000538828	GPBP1L1	Q9HC44	474 aa	Predicted RBP	15.84	■□□□□ 0.13
CLTCL1-205	ENST00000538828	SH3TC1	Q8TE82	1336 aa		15.84	■□□□□ 0.13
CLTCL1-205	ENST00000538828	FANCI	Q9NVI1	1328 aa		15.84	■□□□□ 0.13
CLTCL1-205	ENST00000538828	FAM177B	A6PVY3	158 aa		15.83	■□□□□ 0.12
CLTCL1-205	ENST00000538828	C21orf2	O43822	256 aa		15.83	■□□□□ 0.12
CLTCL1-205	ENST00000538828	CCDC93	Q567U6	631 aa		15.83	■□□□□ 0.12
CLTCL1-205	ENST00000538828	RIC3	Q7Z5B4	369 aa		15.83	■□□□□ 0.12
CLTCL1-205	ENST00000538828	RTKN2	Q8IZC4	609 aa		15.83	■□□□□ 0.12
CLTCL1-205	ENST00000538828	RNF181	Q9P0P0	153 aa		15.83	■□□□□ 0.12
CLTCL1-205	ENST00000538828	DICER1	Q9UPY3	1922 aa	Known RBP	15.83	■□□□□ 0.12
CLTCL1-205	ENST00000538828	CCDC191	Q8NCU4	936 aa		15.82	■□□□□ 0.12
CLTCL1-205	ENST00000538828	RPGR	Q92834	1020 aa	Known RBP	15.82	■□□□□ 0.12
CLTCL1-205	ENST00000538828	RBM17	Q96I25	401 aa	Known RBP	15.82	■□□□□ 0.12
CLTCL1-205	ENST00000538828	PHAX	Q9H814	394 aa	Known RBP	15.82	■□□□□ 0.12
CLTCL1-205	ENST00000538828	TRMT112	Q9UI30	125 aa	Known RBP	15.82	■□□□□ 0.12
CLTCL1-205	ENST00000538828	TNRC6C	Q9HCJ0	1690 aa	Known RBP	15.82	■□□□□ 0.12
CLTCL1-205	ENST00000538828	VAMP4	O75379	141 aa		15.81	■□□□□ 0.12
CLTCL1-205	ENST00000538828	METTL22	Q9BUU2	404 aa	Predicted RBP	15.81	■□□□□ 0.12
CLTCL1-205	ENST00000538828	TAOK3	Q9H2K8	898 aa		15.81	■□□□□ 0.12
CLTCL1-205	ENST00000538828	CCDC88A	Q3V6T2	1871 aa		15.8	■□□□□ 0.12
CLTCL1-205	ENST00000538828	KDM2B	Q8NHM5	1336 aa		15.8	■□□□□ 0.12
CLTCL1-205	ENST00000538828	KSR2	Q6VAB6	950 aa		15.8	■□□□□ 0.12
CLTCL1-205	ENST00000538828	TMC4	Q7Z404	712 aa		15.8	■□□□□ 0.12
CLTCL1-205	ENST00000538828	PSMD1	Q99460	953 aa		15.8	■□□□□ 0.12
CLTCL1-205	ENST00000538828	CACNA1S	Q13698	1873 aa		15.8	■□□□□ 0.12
CLTCL1-205	ENST00000538828	SNED1	Q8TER0	1413 aa		15.79	■□□□□ 0.12
CLTCL1-205	ENST00000538828	BBOX1	O75936	387 aa		15.79	■□□□□ 0.12
CLTCL1-205	ENST00000538828	FKBP4	Q02790	459 aa	Known RBP eCLIP	15.79	■□□□□ 0.12
CLTCL1-205	ENST00000538828	RASSF7	Q02833	373 aa		15.79	■□□□□ 0.12
CLTCL1-205	ENST00000538828	SF3B3	Q15393	1217 aa	Known RBP	15.79	■□□□□ 0.12
CLTCL1-205	ENST00000538828	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	15.79	■□□□□ 0.12
CLTCL1-205	ENST00000538828	VPS33B	Q9H267	617 aa		15.79	■□□□□ 0.12
CLTCL1-205	ENST00000538828		E9PSI1	815 aa		15.78	■□□□□ 0.12
CLTCL1-205	ENST00000538828	SLC4A2	P04920	1241 aa		15.78	■□□□□ 0.12
CLTCL1-205	ENST00000538828	ZNF428	Q96B54	188 aa		15.78	■□□□□ 0.12
CLTCL1-205	ENST00000538828	GLTPD2	A6NH11	291 aa		15.77	■□□□□ 0.12
CLTCL1-205	ENST00000538828	PCCA	P05165	728 aa	Predicted RBP	15.77	■□□□□ 0.12
CLTCL1-205	ENST00000538828	PRELP	P51888	382 aa		15.77	■□□□□ 0.12
CLTCL1-205	ENST00000538828	C1QTNF8	P60827	252 aa		15.77	■□□□□ 0.12
CLTCL1-205	ENST00000538828	EXOSC9	Q06265	439 aa	Known RBP	15.77	■□□□□ 0.12
CLTCL1-205	ENST00000538828	NEXN	Q0ZGT2	675 aa		15.77	■□□□□ 0.12
CLTCL1-205	ENST00000538828	SPINK5	Q9NQ38	1064 aa	Predicted RBP	15.77	■□□□□ 0.12
CLTCL1-205	ENST00000538828	SALL2	Q9Y467	1007 aa	Predicted RBP	15.77	■□□□□ 0.12
CLTCL1-205	ENST00000538828	LAMB2	P55268	1798 aa		15.77	■□□□□ 0.11
CLTCL1-205	ENST00000538828	PI4KAP2	A4QPH2	592 aa		15.76	■□□□□ 0.11
CLTCL1-205	ENST00000538828	ATP5J2-PTCD1	G3V325	749 aa		15.76	■□□□□ 0.11
CLTCL1-205	ENST00000538828	KIF3C	O14782	793 aa		15.76	■□□□□ 0.11
CLTCL1-205	ENST00000538828	FLII	Q13045	1269 aa		15.76	■□□□□ 0.11
CLTCL1-205	ENST00000538828	DPY19L2	Q6NUT2	758 aa		15.76	■□□□□ 0.11
CLTCL1-205	ENST00000538828	PI4KAP1	Q8N8J0	262 aa		15.76	■□□□□ 0.11
CLTCL1-205	ENST00000538828	TMX4	Q9H1E5	349 aa	Predicted RBP	15.76	■□□□□ 0.11
CLTCL1-205	ENST00000538828	CWC25	Q9NXE8	425 aa	Predicted RBP	15.76	■□□□□ 0.11
CLTCL1-205	ENST00000538828	ATP6V0A2	Q9Y487	856 aa		15.76	■□□□□ 0.11
CLTCL1-205	ENST00000538828	DDX60	Q8IY21	1712 aa	Known RBP	15.76	■□□□□ 0.11
CLTCL1-205	ENST00000538828	CDHR2	Q9BYE9	1310 aa		15.75	■□□□□ 0.11
CLTCL1-205	ENST00000538828	HCLS1	P14317	486 aa	Predicted RBP	15.75	■□□□□ 0.11
CLTCL1-205	ENST00000538828	GRAP	Q13588	217 aa		15.75	■□□□□ 0.11
CLTCL1-205	ENST00000538828	C3orf67	Q6ZVT6	689 aa		15.75	■□□□□ 0.11
CLTCL1-205	ENST00000538828	DDX46	Q7L014	1031 aa	Known RBP	15.75	■□□□□ 0.11
CLTCL1-205	ENST00000538828	GRAPL	Q8TC17	118 aa	Predicted RBP	15.75	■□□□□ 0.11
CLTCL1-205	ENST00000538828	MYD88	Q99836	296 aa		15.75	■□□□□ 0.11
CLTCL1-205	ENST00000538828	MAP3K2	Q9Y2U5	619 aa		15.75	■□□□□ 0.11
CLTCL1-205	ENST00000538828	TIAM2	Q8IVF5	1701 aa		15.74	■□□□□ 0.11
CLTCL1-205	ENST00000538828	IRS4	O14654	1257 aa	Predicted RBP	15.74	■□□□□ 0.11
CLTCL1-205	ENST00000538828	PPEF1	O14829	653 aa	Predicted RBP	15.74	■□□□□ 0.11
CLTCL1-205	ENST00000538828	SP8	Q8IXZ3	490 aa		15.74	■□□□□ 0.11
CLTCL1-205	ENST00000538828	FAM89A	Q96GI7	184 aa		15.74	■□□□□ 0.11
CLTCL1-205	ENST00000538828	ABCC4	O15439	1325 aa		15.73	■□□□□ 0.11
CLTCL1-205	ENST00000538828	TOMM70	O94826	608 aa		15.73	■□□□□ 0.11
CLTCL1-205	ENST00000538828	CT47B1	P0C2W7	299 aa	Predicted RBP	15.73	■□□□□ 0.11
CLTCL1-205	ENST00000538828	SLFN5	Q08AF3	891 aa		15.73	■□□□□ 0.11
CLTCL1-205	ENST00000538828	DIEXF	Q68CQ4	756 aa	Known RBP	15.73	■□□□□ 0.11
CLTCL1-205	ENST00000538828	SYNE4	Q8N205	404 aa		15.73	■□□□□ 0.11
CLTCL1-205	ENST00000538828	RTFDC1	Q9BY42	306 aa	Predicted RBP	15.73	■□□□□ 0.11
CLTCL1-205	ENST00000538828	ZNF219	Q9P2Y4	722 aa	Predicted RBP	15.73	■□□□□ 0.11
CLTCL1-205	ENST00000538828	PDE8A	O60658	829 aa		15.72	■□□□□ 0.11
CLTCL1-205	ENST00000538828	IGKV5-2	P06315	115 aa		15.72	■□□□□ 0.11
CLTCL1-205	ENST00000538828	G2E3	Q7L622	706 aa		15.72	■□□□□ 0.11
CLTCL1-205	ENST00000538828	TRMT2A	Q8IZ69	625 aa	Known RBP	15.72	■□□□□ 0.11
CLTCL1-205	ENST00000538828	SUPT20H	Q8NEM7	779 aa		15.72	■□□□□ 0.11
CLTCL1-205	ENST00000538828	LINS1	Q8NG48	757 aa		15.72	■□□□□ 0.11
CLTCL1-205	ENST00000538828	DNAAF4	Q8WXU2	420 aa		15.72	■□□□□ 0.11

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