RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 FEZ1Q99689 392 aa8.21□□□□□ -1.1
USP28-207ENST00000538475 SENP2Q9HC62 589 aa8.21□□□□□ -1.1
USP28-207ENST00000538475 CDV3Q9UKY7 258 aaKnown RBP8.21□□□□□ -1.1
USP28-207ENST00000538475 DDX49Q9Y6V7 483 aaKnown RBP8.21□□□□□ -1.1
USP28-207ENST00000538475 TDRD9Q8NDG6 1382 aaKnown RBP8.21□□□□□ -1.1
USP28-207ENST00000538475 SBNO2Q9Y2G9 1366 aa8.21□□□□□ -1.1
USP28-207ENST00000538475 ABCA8O94911 1581 aa8.2□□□□□ -1.1
USP28-207ENST00000538475 ZIC2O95409 532 aaPredicted RBP8.2□□□□□ -1.1
USP28-207ENST00000538475 BAG4O95429 457 aaKnown RBP8.2□□□□□ -1.1
USP28-207ENST00000538475 MBD3O95983 291 aa8.2□□□□□ -1.1
USP28-207ENST00000538475 TPM3P06753 285 aa8.2□□□□□ -1.1
USP28-207ENST00000538475 PDE4CQ08493 712 aa8.2□□□□□ -1.1
USP28-207ENST00000538475 KIAA2012Q0VF49 1180 aa8.2□□□□□ -1.1
USP28-207ENST00000538475 SYCP1Q15431 976 aa8.2□□□□□ -1.1
USP28-207ENST00000538475 PDCL2Q8N4E4 241 aa8.2□□□□□ -1.1
USP28-207ENST00000538475 FAM184AQ8NB25 1140 aa8.2□□□□□ -1.1
USP28-207ENST00000538475 RUNDC1Q96C34 613 aa8.2□□□□□ -1.1
USP28-207ENST00000538475 PLA2R1Q13018 1463 aa8.19□□□□□ -1.1
USP28-207ENST00000538475 SENP3-EIF4A1A0A087X0R7 540 aa8.19□□□□□ -1.1
USP28-207ENST00000538475 NR3C2P08235 984 aa8.19□□□□□ -1.1
USP28-207ENST00000538475 BMP1P13497 986 aa8.19□□□□□ -1.1
USP28-207ENST00000538475 TIMP2P16035 220 aa8.19□□□□□ -1.1
USP28-207ENST00000538475 MFAP1P55081 439 aaKnown RBP8.19□□□□□ -1.1
USP28-207ENST00000538475 DZIP3Q86Y13 1208 aaKnown RBP8.19□□□□□ -1.1
USP28-207ENST00000538475 PANK1Q8TE04 598 aa8.19□□□□□ -1.1
USP28-207ENST00000538475 ZNF428Q96B54 188 aa8.19□□□□□ -1.1
USP28-207ENST00000538475 GJD4Q96KN9 370 aaPredicted RBP8.19□□□□□ -1.1
USP28-207ENST00000538475 SNRKQ9NRH2 765 aa8.19□□□□□ -1.1
USP28-207ENST00000538475 ATAD2Q6PL18 1390 aa8.19□□□□□ -1.1
USP28-207ENST00000538475 PRG4Q92954 1404 aaPredicted RBP8.19□□□□□ -1.1
USP28-207ENST00000538475 MYOM2P54296 1465 aa8.19□□□□□ -1.1
USP28-207ENST00000538475 CYP2E1P05181 493 aaPredicted RBP8.18□□□□□ -1.1
USP28-207ENST00000538475 SLC20A2Q08357 652 aa8.18□□□□□ -1.1
USP28-207ENST00000538475 RABEP1Q15276 862 aa8.18□□□□□ -1.1
USP28-207ENST00000538475 LRSAM1Q6UWE0 723 aa8.18□□□□□ -1.1
USP28-207ENST00000538475 CCDC116Q8IYX3 515 aa8.18□□□□□ -1.1
USP28-207ENST00000538475 DZIP1LQ8IYY4 767 aaKnown RBP8.18□□□□□ -1.1
USP28-207ENST00000538475 SYAP1Q96A49 352 aaPredicted RBP8.18□□□□□ -1.1
USP28-207ENST00000538475 KIFC2Q96AC6 838 aa8.18□□□□□ -1.1
USP28-207ENST00000538475 ITPKCQ96DU7 683 aa8.18□□□□□ -1.1
USP28-207ENST00000538475 KCTD15Q96SI1 283 aaPredicted RBP8.18□□□□□ -1.1
USP28-207ENST00000538475 OCSTAMPQ9BR26 566 aa8.18□□□□□ -1.1
USP28-207ENST00000538475 IL16Q14005 1332 aa8.18□□□□□ -1.1
USP28-207ENST00000538475 MAGI1Q96QZ7 1491 aaPredicted RBP8.18□□□□□ -1.1
USP28-207ENST00000538475 KIF1BO60333 1816 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 IPO8O15397 1037 aaKnown RBP8.17□□□□□ -1.1
USP28-207ENST00000538475 NUCB1Q02818 461 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 GABPB1Q06547 395 aaPredicted RBP8.17□□□□□ -1.1
USP28-207ENST00000538475 SCARF1Q14162 830 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 NBPF1Q3BBV0 1214 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 NBPF20Q3BBV1 942 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 ZSCAN23Q3MJ62 389 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 MTMR14Q8NCE2 650 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 GCC1Q96CN9 775 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 ZFAND3Q9H8U3 227 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 PRM3Q9NNZ6 103 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 DIAPH3Q9NSV4 1193 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 EMILIN1Q9Y6C2 1016 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 NDUFB9Q9Y6M9 179 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 ABCC11Q96J66 1382 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 TRPM2O94759 1503 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 ABCA6Q8N139 1617 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 ZC3H13Q5T200 1668 aaKnown RBP8.17□□□□□ -1.1
USP28-207ENST00000538475 IFT172Q9UG01 1749 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 TCHHQ07283 1943 aa8.17□□□□□ -1.1
USP28-207ENST00000538475 ZBBXA8MT70 800 aa8.16□□□□□ -1.1
USP28-207ENST00000538475 CARMIL2Q6F5E8 1435 aa8.16□□□□□ -1.1
USP28-207ENST00000538475 PIBF1Q8WXW3 757 aa8.16□□□□□ -1.1
USP28-207ENST00000538475 TRIM47Q96LD4 638 aa8.16□□□□□ -1.1
USP28-207ENST00000538475 ARXQ96QS3 562 aa8.16□□□□□ -1.1
USP28-207ENST00000538475 KLF16Q9BXK1 252 aaPredicted RBP8.16□□□□□ -1.1
USP28-207ENST00000538475 TSPYL1Q9H0U9 437 aa8.16□□□□□ -1.1
USP28-207ENST00000538475 LMBRD1Q9NUN5 540 aa8.16□□□□□ -1.1
USP28-207ENST00000538475 KIF3AQ9Y496 699 aa8.16□□□□□ -1.1
USP28-207ENST00000538475 ANKRD26Q9UPS8 1709 aa8.15□□□□□ -1.1
USP28-207ENST00000538475 SAMD9LQ8IVG5 1584 aa8.15□□□□□ -1.1
USP28-207ENST00000538475 INO80Q9ULG1 1556 aaPredicted RBP8.15□□□□□ -1.1
USP28-207ENST00000538475 SETBP1Q9Y6X0 1596 aa8.15□□□□□ -1.1
USP28-207ENST00000538475 NSD2O96028 1365 aa8.15□□□□□ -1.1
USP28-207ENST00000538475 SOCS7O14512 581 aa8.15□□□□□ -1.1
USP28-207ENST00000538475 UPP2O95045 317 aa8.15□□□□□ -1.1
USP28-207ENST00000538475 RAB15P59190 212 aa8.15□□□□□ -1.1
USP28-207ENST00000538475 DHX9Q08211 1270 aaKnown RBP8.15□□□□□ -1.1
USP28-207ENST00000538475 MRPL14Q6P1L8 145 aaKnown RBP8.15□□□□□ -1.1
USP28-207ENST00000538475 TRIM46Q7Z4K8 759 aa8.15□□□□□ -1.1
USP28-207ENST00000538475 FTSJ3Q8IY81 847 aaKnown RBP8.15□□□□□ -1.1
USP28-207ENST00000538475 IPO4Q8TEX9 1081 aaKnown RBP8.15□□□□□ -1.1
USP28-207ENST00000538475 PUS7Q96PZ0 661 aaKnown RBP8.15□□□□□ -1.1
USP28-207ENST00000538475 SPTLC3Q9NUV7 552 aa8.15□□□□□ -1.1
USP28-207ENST00000538475 PGPEP1Q9NXJ5 209 aa8.15□□□□□ -1.1
USP28-207ENST00000538475 CFAP65Q6ZU64 1925 aaKnown RBP8.15□□□□□ -1.11
USP28-207ENST00000538475 TET3O43151 1660 aa8.14□□□□□ -1.11
USP28-207ENST00000538475 MED14O60244 1454 aa8.14□□□□□ -1.11
USP28-207ENST00000538475 PLB1Q6P1J6 1458 aa8.14□□□□□ -1.11
USP28-207ENST00000538475 CCDC66A2RUB6 948 aa8.14□□□□□ -1.11
USP28-207ENST00000538475 SNRPBP14678 240 aaKnown RBP8.14□□□□□ -1.11
USP28-207ENST00000538475 MCM2P49736 904 aa8.14□□□□□ -1.11
USP28-207ENST00000538475 PPP1R26Q5T8A7 1209 aaPredicted RBP8.14□□□□□ -1.11
USP28-207ENST00000538475 KIF2CQ99661 725 aa8.14□□□□□ -1.11
USP28-207ENST00000538475 RBSNQ9H1K0 784 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms