RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 PTCD1O75127 700 aaKnown RBP16.96■□□□□ 0.31
LIMK1-208ENST00000538333 PTPN12Q05209 780 aaKnown RBP16.96■□□□□ 0.31
LIMK1-208ENST00000538333 RASEFQ8IZ41 740 aa16.96■□□□□ 0.31
LIMK1-208ENST00000538333 JARID2Q92833 1246 aaPredicted RBP16.96■□□□□ 0.31
LIMK1-208ENST00000538333 KIAA1211Q6ZU35 1233 aa16.96■□□□□ 0.31
LIMK1-208ENST00000538333 TTC14Q96N46 770 aa16.96■□□□□ 0.31
LIMK1-208ENST00000538333 A0A087WZG4 1122 aa16.95■□□□□ 0.3
LIMK1-208ENST00000538333 XRCC6P12956 609 aaKnown RBP eCLIP16.95■□□□□ 0.3
LIMK1-208ENST00000538333 PTH1RQ03431 593 aa16.94■□□□□ 0.3
LIMK1-208ENST00000538333 KLHL40Q2TBA0 621 aa16.94■□□□□ 0.3
LIMK1-208ENST00000538333 TTLL7Q6ZT98 887 aa16.94■□□□□ 0.3
LIMK1-208ENST00000538333 KCNB2Q92953 911 aa16.94■□□□□ 0.3
LIMK1-208ENST00000538333 SNRKQ9NRH2 765 aa16.94■□□□□ 0.3
LIMK1-208ENST00000538333 STRN4Q9NRL3 753 aa16.94■□□□□ 0.3
LIMK1-208ENST00000538333 ISY1Q9ULR0 285 aaKnown RBP16.94■□□□□ 0.3
LIMK1-208ENST00000538333 MCTP1Q6DN14 999 aa16.94■□□□□ 0.3
LIMK1-208ENST00000538333 DDX54Q8TDD1 881 aaKnown RBP16.94■□□□□ 0.3
LIMK1-208ENST00000538333 H7C1W4 665 aa16.93■□□□□ 0.3
LIMK1-208ENST00000538333 A1BGP04217 495 aa16.93■□□□□ 0.3
LIMK1-208ENST00000538333 NOL8Q76FK4 1167 aaKnown RBP16.93■□□□□ 0.3
LIMK1-208ENST00000538333 LMBRD1Q9NUN5 540 aa16.93■□□□□ 0.3
LIMK1-208ENST00000538333 HIP1O00291 1037 aa16.92■□□□□ 0.3
LIMK1-208ENST00000538333 BOLA2Q9H3K6 86 aa16.92■□□□□ 0.3
LIMK1-208ENST00000538333 BRD1O95696 1058 aa16.92■□□□□ 0.3
LIMK1-208ENST00000538333 FOXO4P98177 505 aa16.92■□□□□ 0.3
LIMK1-208ENST00000538333 CCDC171Q6TFL3 1326 aa16.92■□□□□ 0.3
LIMK1-208ENST00000538333 EVA1CP58658 441 aa16.91■□□□□ 0.3
LIMK1-208ENST00000538333 TNNI3KQ59H18 835 aa16.91■□□□□ 0.3
LIMK1-208ENST00000538333 FAM227BQ96M60 508 aa16.91■□□□□ 0.3
LIMK1-208ENST00000538333 DBNLQ9UJU6 430 aaKnown RBP16.91■□□□□ 0.3
LIMK1-208ENST00000538333 FPGT-TNNI3KV9GXZ4 949 aa16.91■□□□□ 0.3
LIMK1-208ENST00000538333 MRE11P49959 708 aa16.91■□□□□ 0.3
LIMK1-208ENST00000538333 TFCP2Q12800 502 aa16.91■□□□□ 0.3
LIMK1-208ENST00000538333 NMIQ13287 307 aaPredicted RBP16.91■□□□□ 0.3
LIMK1-208ENST00000538333 NECTIN1Q15223 517 aa16.91■□□□□ 0.3
LIMK1-208ENST00000538333 DDX49Q9Y6V7 483 aaKnown RBP16.91■□□□□ 0.3
LIMK1-208ENST00000538333 LTBP4Q8N2S1 1624 aa16.9■□□□□ 0.3
LIMK1-208ENST00000538333 LMBR1LQ6UX01 489 aa16.9■□□□□ 0.3
LIMK1-208ENST00000538333 GAS2L3Q86XJ1 694 aa16.9■□□□□ 0.3
LIMK1-208ENST00000538333 CWC25Q9NXE8 425 aaPredicted RBP16.9■□□□□ 0.3
LIMK1-208ENST00000538333 ATP5JP18859 108 aa16.89■□□□□ 0.3
LIMK1-208ENST00000538333 AK2P54819 239 aa16.89■□□□□ 0.3
LIMK1-208ENST00000538333 MAP4K1Q92918 833 aa16.89■□□□□ 0.3
LIMK1-208ENST00000538333 ARXQ96QS3 562 aa16.89■□□□□ 0.3
LIMK1-208ENST00000538333 MED23Q9ULK4 1368 aa16.89■□□□□ 0.3
LIMK1-208ENST00000538333 ITGB4P16144 1822 aa16.89■□□□□ 0.29
LIMK1-208ENST00000538333 JCADQ9P266 1359 aa16.89■□□□□ 0.29
LIMK1-208ENST00000538333 A0A0D9SFI3 127 aa16.89■□□□□ 0.29
LIMK1-208ENST00000538333 PRPF40BQ6NWY9 871 aaKnown RBP16.89■□□□□ 0.29
LIMK1-208ENST00000538333 RUFY3Q7L099 469 aa16.89■□□□□ 0.29
LIMK1-208ENST00000538333 TM6SF1Q9BZW5 370 aa16.89■□□□□ 0.29
LIMK1-208ENST00000538333 GRPEL1Q9HAV7 217 aa16.89■□□□□ 0.29
LIMK1-208ENST00000538333 ADCK5Q3MIX3 580 aa16.88■□□□□ 0.29
LIMK1-208ENST00000538333 CCDC191Q8NCU4 936 aa16.88■□□□□ 0.29
LIMK1-208ENST00000538333 FSD1Q9BTV5 496 aa16.88■□□□□ 0.29
LIMK1-208ENST00000538333 PANK2Q9BZ23 570 aa16.88■□□□□ 0.29
LIMK1-208ENST00000538333 CASTP20810 708 aaKnown RBP16.88■□□□□ 0.29
LIMK1-208ENST00000538333 ZBTB3Q9H5J0 574 aa16.88■□□□□ 0.29
LIMK1-208ENST00000538333 ZSWIM6Q9HCJ5 1215 aa16.88■□□□□ 0.29
LIMK1-208ENST00000538333 RBM8AQ9Y5S9 174 aaKnown RBP16.88■□□□□ 0.29
LIMK1-208ENST00000538333 CHAMP1Q96JM3 812 aa16.87■□□□□ 0.29
LIMK1-208ENST00000538333 TMOD3Q9NYL9 352 aa16.87■□□□□ 0.29
LIMK1-208ENST00000538333 LIMCH1Q9UPQ0 1083 aa16.87■□□□□ 0.29
LIMK1-208ENST00000538333 COL14A1Q05707 1796 aaKnown RBP16.87■□□□□ 0.29
LIMK1-208ENST00000538333 DISP2A7MBM2 1401 aa16.87■□□□□ 0.29
LIMK1-208ENST00000538333 CPA1P15085 419 aa16.87■□□□□ 0.29
LIMK1-208ENST00000538333 RFX7Q2KHR2 1363 aa16.86■□□□□ 0.29
LIMK1-208ENST00000538333 VPS53Q5VIR6 699 aa16.86■□□□□ 0.29
LIMK1-208ENST00000538333 CREB3L3Q68CJ9 461 aa16.86■□□□□ 0.29
LIMK1-208ENST00000538333 ATG9AQ7Z3C6 839 aa16.86■□□□□ 0.29
LIMK1-208ENST00000538333 EDC3Q96F86 508 aaKnown RBP16.86■□□□□ 0.29
LIMK1-208ENST00000538333 JAKMIP1Q96N16 626 aaKnown RBP16.86■□□□□ 0.29
LIMK1-208ENST00000538333 DBNDD2Q9BQY9 259 aa16.86■□□□□ 0.29
LIMK1-208ENST00000538333 BTG4Q9NY30 223 aa16.86■□□□□ 0.29
LIMK1-208ENST00000538333 RPAP1Q9BWH6 1393 aaPredicted RBP16.86■□□□□ 0.29
LIMK1-208ENST00000538333 PRPF40AO75400 957 aaKnown RBP16.85■□□□□ 0.29
LIMK1-208ENST00000538333 ISCA1Q9BUE6 129 aa16.85■□□□□ 0.29
LIMK1-208ENST00000538333 PLCH1Q4KWH8 1693 aa16.85■□□□□ 0.29
LIMK1-208ENST00000538333 FOXD4L5Q5VV16 416 aaPredicted RBP16.85■□□□□ 0.29
LIMK1-208ENST00000538333 VSIG10Q8N0Z9 540 aa16.85■□□□□ 0.29
LIMK1-208ENST00000538333 FOXD4L4Q8WXT5 416 aaPredicted RBP16.85■□□□□ 0.29
LIMK1-208ENST00000538333 PIGBQ92521 554 aa16.85■□□□□ 0.29
LIMK1-208ENST00000538333 ASAP1Q9ULH1 1129 aa16.85■□□□□ 0.29
LIMK1-208ENST00000538333 ZNF589Q86UQ0 364 aaPredicted RBP16.84■□□□□ 0.29
LIMK1-208ENST00000538333 GPT2Q8TD30 523 aa16.84■□□□□ 0.29
LIMK1-208ENST00000538333 HAUS7Q99871 368 aa16.84■□□□□ 0.29
LIMK1-208ENST00000538333 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.84■□□□□ 0.29
LIMK1-208ENST00000538333 SLC27A2O14975 620 aa16.84■□□□□ 0.29
LIMK1-208ENST00000538333 ZKSCAN1P17029 563 aaPredicted RBP16.84■□□□□ 0.29
LIMK1-208ENST00000538333 GPR108Q9NPR9 543 aa16.84■□□□□ 0.29
LIMK1-208ENST00000538333 RTN4Q9NQC3 1192 aaKnown RBP16.84■□□□□ 0.29
LIMK1-208ENST00000538333 CYP46A1Q9Y6A2 500 aa16.84■□□□□ 0.29
LIMK1-208ENST00000538333 COL16A1Q07092 1604 aaPredicted RBP16.83■□□□□ 0.29
LIMK1-208ENST00000538333 TCHHQ07283 1943 aa16.83■□□□□ 0.28
LIMK1-208ENST00000538333 LARGE1O95461 756 aa16.83■□□□□ 0.28
LIMK1-208ENST00000538333 LARP6Q9BRS8 491 aaKnown RBP16.83■□□□□ 0.28
LIMK1-208ENST00000538333 ATG3Q9NT62 314 aa16.83■□□□□ 0.28
LIMK1-208ENST00000538333 PDRG1Q9NUG6 133 aa16.83■□□□□ 0.28
LIMK1-208ENST00000538333 CHMP3Q9Y3E7 222 aa16.83■□□□□ 0.28
LIMK1-208ENST00000538333 LRP6O75581 1613 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms