RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 ALG2Q9H553 416 aa6.28□□□□□ -1.4
SKA3-207ENST00000536239 IGFLR1Q9H665 355 aa6.28□□□□□ -1.4
SKA3-207ENST00000536239 GOLGA2P5Q9HBQ8 144 aa6.28□□□□□ -1.4
SKA3-207ENST00000536239 CHMP3Q9Y3E7 222 aa6.28□□□□□ -1.4
SKA3-207ENST00000536239 ZBTB7BO15156 539 aaPredicted RBP6.27□□□□□ -1.41
SKA3-207ENST00000536239 PSAPL1Q6NUJ1 521 aa6.27□□□□□ -1.41
SKA3-207ENST00000536239 DEPDC4Q8N2C3 294 aa6.27□□□□□ -1.41
SKA3-207ENST00000536239 TSPAN10Q9H1Z9 355 aaPredicted RBP6.27□□□□□ -1.41
SKA3-207ENST00000536239 EFCC1Q9HA90 598 aa6.27□□□□□ -1.41
SKA3-207ENST00000536239 RNF112Q9ULX5 631 aa6.27□□□□□ -1.41
SKA3-207ENST00000536239 TRIM50Q86XT4 487 aa6.26□□□□□ -1.41
SKA3-207ENST00000536239 TPCN2Q8NHX9 752 aa6.26□□□□□ -1.41
SKA3-207ENST00000536239 DNAJB12Q9NXW2 375 aaKnown RBP6.26□□□□□ -1.41
SKA3-207ENST00000536239 USP17L5A8MUK1 530 aa6.25□□□□□ -1.41
SKA3-207ENST00000536239 RGS9O75916 674 aaPredicted RBP6.25□□□□□ -1.41
SKA3-207ENST00000536239 CCDC102BQ68D86 513 aa6.25□□□□□ -1.41
SKA3-207ENST00000536239 BTLAQ7Z6A9 289 aa6.25□□□□□ -1.41
SKA3-207ENST00000536239 KIAA1024Q9UPX6 916 aa6.25□□□□□ -1.41
SKA3-207ENST00000536239 WFDC12Q8WWY7 111 aa6.24□□□□□ -1.41
SKA3-207ENST00000536239 GSX2Q9BZM3 304 aa6.24□□□□□ -1.41
SKA3-207ENST00000536239 NAGPAQ9UK23 515 aa6.24□□□□□ -1.41
SKA3-207ENST00000536239 M0R2N6 131 aa6.23□□□□□ -1.41
SKA3-207ENST00000536239 IREB2P48200 963 aaKnown RBP6.23□□□□□ -1.41
SKA3-207ENST00000536239 ATP1A2P50993 1020 aa6.23□□□□□ -1.41
SKA3-207ENST00000536239 MSL1Q68DK7 614 aa6.23□□□□□ -1.41
SKA3-207ENST00000536239 FBXO11Q86XK2 927 aa6.23□□□□□ -1.41
SKA3-207ENST00000536239 ALDH16A1Q8IZ83 802 aa6.23□□□□□ -1.41
SKA3-207ENST00000536239 DTWD1Q8N5C7 304 aa6.23□□□□□ -1.41
SKA3-207ENST00000536239 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.23□□□□□ -1.41
SKA3-207ENST00000536239 PPP1R12BO60237 982 aaPredicted RBP6.22□□□□□ -1.41
SKA3-207ENST00000536239 NOS3P29474 1203 aa6.22□□□□□ -1.41
SKA3-207ENST00000536239 CLDN10P78369 228 aa6.22□□□□□ -1.41
SKA3-207ENST00000536239 CCINQ13939 588 aa6.22□□□□□ -1.41
SKA3-207ENST00000536239 MCM6Q14566 821 aa6.22□□□□□ -1.41
SKA3-207ENST00000536239 HIF1AQ16665 826 aa6.22□□□□□ -1.41
SKA3-207ENST00000536239 MCTP1Q6DN14 999 aa6.22□□□□□ -1.41
SKA3-207ENST00000536239 PNMA5Q96PV4 448 aa6.22□□□□□ -1.41
SKA3-207ENST00000536239 COG6Q9Y2V7 657 aa6.22□□□□□ -1.41
SKA3-207ENST00000536239 C21orf2O43822 256 aa6.21□□□□□ -1.42
SKA3-207ENST00000536239 GRIK5Q16478 980 aa6.21□□□□□ -1.42
SKA3-207ENST00000536239 FAM35AQ86V20 835 aa6.21□□□□□ -1.42
SKA3-207ENST00000536239 PLEKHM2Q8IWE5 1019 aa6.21□□□□□ -1.42
SKA3-207ENST00000536239 STAG2Q8N3U4 1231 aa6.21□□□□□ -1.42
SKA3-207ENST00000536239 ATAD2Q6PL18 1390 aa6.2□□□□□ -1.42
SKA3-207ENST00000536239 KRTAP4-8A0A0G2JLE6 195 aa6.2□□□□□ -1.42
SKA3-207ENST00000536239 NFKB1P19838 968 aa6.2□□□□□ -1.42
SKA3-207ENST00000536239 PCSK7Q16549 785 aa6.2□□□□□ -1.42
SKA3-207ENST00000536239 IGF2-ASQ6U949 168 aa6.2□□□□□ -1.42
SKA3-207ENST00000536239 PRR23CQ6ZRP0 262 aa6.2□□□□□ -1.42
SKA3-207ENST00000536239 LARGE2Q8N3Y3 721 aa6.2□□□□□ -1.42
SKA3-207ENST00000536239 TSEN2Q8NCE0 465 aaKnown RBP6.2□□□□□ -1.42
SKA3-207ENST00000536239 MEGF10Q96KG7 1140 aa6.2□□□□□ -1.42
SKA3-207ENST00000536239 C2orf49Q9BVC5 232 aaPredicted RBP6.2□□□□□ -1.42
SKA3-207ENST00000536239 FRRS1LQ9P0K9 344 aa6.2□□□□□ -1.42
SKA3-207ENST00000536239 COL17A1Q9UMD9 1497 aaPredicted RBP6.2□□□□□ -1.42
SKA3-207ENST00000536239 USP17L3A6NCW0 530 aa6.19□□□□□ -1.42
SKA3-207ENST00000536239 USP17L4A6NCW7 530 aa6.19□□□□□ -1.42
SKA3-207ENST00000536239 PALM3A6NDB9 673 aaPredicted RBP6.19□□□□□ -1.42
SKA3-207ENST00000536239 CPB1P15086 417 aa6.19□□□□□ -1.42
SKA3-207ENST00000536239 IER5Q5VY09 327 aa6.19□□□□□ -1.42
SKA3-207ENST00000536239 USP17L2Q6R6M4 530 aa6.19□□□□□ -1.42
SKA3-207ENST00000536239 USP17L1Q7RTZ2 530 aa6.19□□□□□ -1.42
SKA3-207ENST00000536239 SLC51AQ86UW1 340 aa6.19□□□□□ -1.42
SKA3-207ENST00000536239 OGFOD1Q8N543 542 aa6.19□□□□□ -1.42
SKA3-207ENST00000536239 LPIN3Q9BQK8 851 aa6.19□□□□□ -1.42
SKA3-207ENST00000536239 PCMTD2Q9NV79 361 aa6.19□□□□□ -1.42
SKA3-207ENST00000536239 SIX5Q8N196 739 aa6.18□□□□□ -1.42
SKA3-207ENST00000536239 GAS2L2Q8NHY3 880 aa6.18□□□□□ -1.42
SKA3-207ENST00000536239 TTC9Q92623 222 aa6.18□□□□□ -1.42
SKA3-207ENST00000536239 NGLY1Q96IV0 654 aa6.18□□□□□ -1.42
SKA3-207ENST00000536239 DMGDHQ9UI17 866 aaKnown RBP6.18□□□□□ -1.42
SKA3-207ENST00000536239 ZBTB42B2RXF5 422 aa6.17□□□□□ -1.42
SKA3-207ENST00000536239 PAX4O43316 350 aa6.17□□□□□ -1.42
SKA3-207ENST00000536239 DKK1O94907 266 aa6.17□□□□□ -1.42
SKA3-207ENST00000536239 MAP3K6O95382 1288 aa6.17□□□□□ -1.42
SKA3-207ENST00000536239 PLAURQ03405 335 aa6.17□□□□□ -1.42
SKA3-207ENST00000536239 PERM1Q5SV97 790 aa6.17□□□□□ -1.42
SKA3-207ENST00000536239 WFDC8Q8IUA0 241 aa6.17□□□□□ -1.42
SKA3-207ENST00000536239 WWC1Q8IX03 1113 aa6.17□□□□□ -1.42
SKA3-207ENST00000536239 MKRN1Q9UHC7 482 aaKnown RBP6.17□□□□□ -1.42
SKA3-207ENST00000536239 TGFBR3LH3BV60 316 aa6.16□□□□□ -1.42
SKA3-207ENST00000536239 DEAF1O75398 565 aaPredicted RBP6.16□□□□□ -1.42
SKA3-207ENST00000536239 FSTP19883 344 aa6.16□□□□□ -1.42
SKA3-207ENST00000536239 GRNP28799 593 aaKnown RBP6.16□□□□□ -1.42
SKA3-207ENST00000536239 ELMSAN1Q6PJG2 1045 aa6.16□□□□□ -1.42
SKA3-207ENST00000536239 DZIP1LQ8IYY4 767 aaKnown RBP6.16□□□□□ -1.42
SKA3-207ENST00000536239 TRPM4Q8TD43 1214 aa6.16□□□□□ -1.42
SKA3-207ENST00000536239 CHMP7Q8WUX9 453 aaPredicted RBP6.16□□□□□ -1.42
SKA3-207ENST00000536239 SCG3Q8WXD2 468 aaKnown RBP6.16□□□□□ -1.42
SKA3-207ENST00000536239 BCS1LQ9Y276 419 aa6.16□□□□□ -1.42
SKA3-207ENST00000536239 RBM19Q9Y4C8 960 aaKnown RBP6.16□□□□□ -1.42
SKA3-207ENST00000536239 DLL1O00548 723 aa6.15□□□□□ -1.42
SKA3-207ENST00000536239 ATP9BO43861 1147 aa6.15□□□□□ -1.42
SKA3-207ENST00000536239 EPB42P16452 691 aa6.15□□□□□ -1.42
SKA3-207ENST00000536239 SSTR4P31391 388 aa6.15□□□□□ -1.42
SKA3-207ENST00000536239 TXKP42681 527 aa6.15□□□□□ -1.42
SKA3-207ENST00000536239 RTN1Q16799 776 aa6.15□□□□□ -1.42
SKA3-207ENST00000536239 DHX32Q7L7V1 743 aaKnown RBP6.15□□□□□ -1.42
SKA3-207ENST00000536239 ADAMTS19Q8TE59 1207 aa6.15□□□□□ -1.42
SKA3-207ENST00000536239 ZNF594Q96JF6 807 aaPredicted RBP6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms