RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 FSTL1Q12841 308 aa20.07■□□□□ 0.8
CPSF1-211ENST00000533492 NLRP3Q96P20 1036 aa20.07■□□□□ 0.8
CPSF1-211ENST00000533492 MBIPQ9NS73 344 aa20.07■□□□□ 0.8
CPSF1-211ENST00000533492 CHPF2Q9P2E5 772 aa20.07■□□□□ 0.8
CPSF1-211ENST00000533492 DICER1Q9UPY3 1922 aaKnown RBP20.06■□□□□ 0.8
CPSF1-211ENST00000533492 GNAI1P63096 354 aa20.06■□□□□ 0.8
CPSF1-211ENST00000533492 FKBP4Q02790 459 aaKnown RBP eCLIP20.06■□□□□ 0.8
CPSF1-211ENST00000533492 DUSP27Q5VZP5 1158 aa20.06■□□□□ 0.8
CPSF1-211ENST00000533492 OLFM4Q6UX06 510 aa20.06■□□□□ 0.8
CPSF1-211ENST00000533492 TIAM2Q8IVF5 1701 aa20.06■□□□□ 0.8
CPSF1-211ENST00000533492 RBM17Q96I25 401 aaKnown RBP20.06■□□□□ 0.8
CPSF1-211ENST00000533492 DBF4Q9UBU7 674 aaPredicted RBP20.06■□□□□ 0.8
CPSF1-211ENST00000533492 HOXA10P31260 410 aaPredicted RBP20.05■□□□□ 0.8
CPSF1-211ENST00000533492 TCIRG1Q13488 830 aa20.05■□□□□ 0.8
CPSF1-211ENST00000533492 IFT57Q9NWB7 429 aa20.05■□□□□ 0.8
CPSF1-211ENST00000533492 CEP350Q5VT06 3117 aa20.04■□□□□ 0.8
CPSF1-211ENST00000533492 ZNF853P0CG23 659 aa20.04■□□□□ 0.8
CPSF1-211ENST00000533492 CC2D2BQ6DHV5 1058 aa20.04■□□□□ 0.8
CPSF1-211ENST00000533492 SMC1BQ8NDV3 1235 aa20.04■□□□□ 0.8
CPSF1-211ENST00000533492 ZNF277Q9NRM2 450 aaPredicted RBP20.04■□□□□ 0.8
CPSF1-211ENST00000533492 RIC1Q4ADV7 1423 aa20.03■□□□□ 0.8
CPSF1-211ENST00000533492 ANP32CO43423 234 aa20.03■□□□□ 0.8
CPSF1-211ENST00000533492 CCDC184Q52MB2 194 aa20.03■□□□□ 0.8
CPSF1-211ENST00000533492 SLC10A5Q5PT55 438 aa20.03■□□□□ 0.8
CPSF1-211ENST00000533492 ANKRD13DQ6ZTN6 518 aa20.03■□□□□ 0.8
CPSF1-211ENST00000533492 SYNE4Q8N205 404 aa20.03■□□□□ 0.8
CPSF1-211ENST00000533492 CRAMP1Q96RY5 1269 aa20.03■□□□□ 0.8
CPSF1-211ENST00000533492 HYPKQ9NX55 129 aa20.03■□□□□ 0.8
CPSF1-211ENST00000533492 NLRP10Q86W26 655 aa20.02■□□□□ 0.8
CPSF1-211ENST00000533492 PLBD2Q8NHP8 589 aa20.02■□□□□ 0.8
CPSF1-211ENST00000533492 TMX4Q9H1E5 349 aaPredicted RBP20.02■□□□□ 0.8
CPSF1-211ENST00000533492 TRMT112Q9UI30 125 aaKnown RBP20.02■□□□□ 0.8
CPSF1-211ENST00000533492 RNF123Q5XPI4 1314 aa20.02■□□□□ 0.79
CPSF1-211ENST00000533492 ELL2O00472 640 aaPredicted RBP20.01■□□□□ 0.79
CPSF1-211ENST00000533492 TCERG1O14776 1098 aaKnown RBP20.01■□□□□ 0.79
CPSF1-211ENST00000533492 DDNO94850 711 aaPredicted RBP20.01■□□□□ 0.79
CPSF1-211ENST00000533492 POTECB2RU33 542 aa20■□□□□ 0.79
CPSF1-211ENST00000533492 IARSP41252 1262 aaKnown RBP20■□□□□ 0.79
CPSF1-211ENST00000533492 GRIPAP1Q4V328 841 aa20■□□□□ 0.79
CPSF1-211ENST00000533492 C3orf67Q6ZVT6 689 aa20■□□□□ 0.79
CPSF1-211ENST00000533492 SH3TC1Q8TE82 1336 aa20■□□□□ 0.79
CPSF1-211ENST00000533492 PPEF1O14829 653 aaPredicted RBP19.99■□□□□ 0.79
CPSF1-211ENST00000533492 HCLS1P14317 486 aaPredicted RBP19.99■□□□□ 0.79
CPSF1-211ENST00000533492 PSMD1Q99460 953 aa19.99■□□□□ 0.79
CPSF1-211ENST00000533492 CHMP4AQ9BY43 222 aa19.99■□□□□ 0.79
CPSF1-211ENST00000533492 MRS2Q9HD23 443 aa19.99■□□□□ 0.79
CPSF1-211ENST00000533492 JDP2Q8WYK2 163 aa19.98■□□□□ 0.79
CPSF1-211ENST00000533492 WDR90Q96KV7 1748 aa19.98■□□□□ 0.79
CPSF1-211ENST00000533492 ANKRD36CQ5JPF3 1778 aa19.98■□□□□ 0.79
CPSF1-211ENST00000533492 ZNF428Q96B54 188 aa19.97■□□□□ 0.79
CPSF1-211ENST00000533492 IQCA1LA6NCM1 817 aa19.96■□□□□ 0.79
CPSF1-211ENST00000533492 ATP5J2-PTCD1G3V325 749 aa19.96■□□□□ 0.79
CPSF1-211ENST00000533492 GOLGA2Q08379 1002 aa19.96■□□□□ 0.79
CPSF1-211ENST00000533492 DDX46Q7L014 1031 aaKnown RBP19.96■□□□□ 0.79
CPSF1-211ENST00000533492 RIC3Q7Z5B4 369 aa19.96■□□□□ 0.79
CPSF1-211ENST00000533492 C8orf58Q8NAV2 365 aa19.96■□□□□ 0.79
CPSF1-211ENST00000533492 BBOX1O75936 387 aa19.95■□□□□ 0.78
CPSF1-211ENST00000533492 ISCA1Q9BUE6 129 aa19.95■□□□□ 0.78
CPSF1-211ENST00000533492 ABCC4O15439 1325 aa19.95■□□□□ 0.78
CPSF1-211ENST00000533492 FZD9O00144 591 aa19.94■□□□□ 0.78
CPSF1-211ENST00000533492 CCDC27Q2M243 656 aa19.94■□□□□ 0.78
CPSF1-211ENST00000533492 CCDC30Q5VVM6 783 aa19.94■□□□□ 0.78
CPSF1-211ENST00000533492 LARGE2Q8N3Y3 721 aa19.94■□□□□ 0.78
CPSF1-211ENST00000533492 PHAXQ9H814 394 aaKnown RBP19.94■□□□□ 0.78
CPSF1-211ENST00000533492 ATP6V0A2Q9Y487 856 aa19.94■□□□□ 0.78
CPSF1-211ENST00000533492 EIF6P56537 245 aaKnown RBP19.93■□□□□ 0.78
CPSF1-211ENST00000533492 HTRA3P83110 453 aa19.93■□□□□ 0.78
CPSF1-211ENST00000533492 DNAJC5GQ8N7S2 189 aa19.93■□□□□ 0.78
CPSF1-211ENST00000533492 FAM89AQ96GI7 184 aa19.93■□□□□ 0.78
CPSF1-211ENST00000533492 L3MBTL3Q96JM7 780 aaPredicted RBP19.93■□□□□ 0.78
CPSF1-211ENST00000533492 ZNF541Q9H0D2 1346 aa19.93■□□□□ 0.78
CPSF1-211ENST00000533492 TRIM28Q13263 835 aaKnown RBP19.92■□□□□ 0.78
CPSF1-211ENST00000533492 WWC1Q8IX03 1113 aa19.92■□□□□ 0.78
CPSF1-211ENST00000533492 TSR2Q969E8 191 aaKnown RBP19.92■□□□□ 0.78
CPSF1-211ENST00000533492 SNED1Q8TER0 1413 aa19.92■□□□□ 0.78
CPSF1-211ENST00000533492 DDX58O95786 925 aaKnown RBP19.91■□□□□ 0.78
CPSF1-211ENST00000533492 GRAPQ13588 217 aa19.91■□□□□ 0.78
CPSF1-211ENST00000533492 RTL5Q5HYW3 569 aaPredicted RBP19.91■□□□□ 0.78
CPSF1-211ENST00000533492 CHADLQ6NUI6 762 aa19.91■□□□□ 0.78
CPSF1-211ENST00000533492 SP8Q8IXZ3 490 aa19.91■□□□□ 0.78
CPSF1-211ENST00000533492 SUPT20HQ8NEM7 779 aa19.91■□□□□ 0.78
CPSF1-211ENST00000533492 GRAPLQ8TC17 118 aaPredicted RBP19.91■□□□□ 0.78
CPSF1-211ENST00000533492 HACL1Q9UJ83 578 aa19.91■□□□□ 0.78
CPSF1-211ENST00000533492 PPIP5K2O43314 1243 aa19.9■□□□□ 0.78
CPSF1-211ENST00000533492 SLC51AQ86UW1 340 aa19.9■□□□□ 0.78
CPSF1-211ENST00000533492 GPC2Q8N158 579 aa19.9■□□□□ 0.78
CPSF1-211ENST00000533492 TSPYL6Q8N831 410 aa19.9■□□□□ 0.78
CPSF1-211ENST00000533492 TAF1DQ9H5J8 278 aaPredicted RBP19.9■□□□□ 0.78
CPSF1-211ENST00000533492 GJA3Q9Y6H8 435 aa19.9■□□□□ 0.78
CPSF1-211ENST00000533492 NCBP3Q53F19 620 aaKnown RBP19.89■□□□□ 0.77
CPSF1-211ENST00000533492 DPP8Q6V1X1 898 aaPredicted RBP19.89■□□□□ 0.77
CPSF1-211ENST00000533492 NIM1KQ8IY84 436 aa19.89■□□□□ 0.77
CPSF1-211ENST00000533492 MPNDQ8N594 471 aa19.89■□□□□ 0.77
CPSF1-211ENST00000533492 MYD88Q99836 296 aa19.89■□□□□ 0.77
CPSF1-211ENST00000533492 STK31Q9BXU1 1019 aa19.89■□□□□ 0.77
CPSF1-211ENST00000533492 VPS33BQ9H267 617 aa19.89■□□□□ 0.77
CPSF1-211ENST00000533492 SALL2Q9Y467 1007 aaPredicted RBP19.89■□□□□ 0.77
CPSF1-211ENST00000533492 SCN4AP35499 1836 aa19.88■□□□□ 0.77
CPSF1-211ENST00000533492 LAMB2P55268 1798 aa19.88■□□□□ 0.77
CPSF1-211ENST00000533492 IRS4O14654 1257 aaPredicted RBP19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms