RNA–Protein interactions for RNA: ENST00000533440.1

NXF1-215, Transcript of nuclear RNA export factor 1, human

TSL 2

Gene NXF1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-215	ENST00000533440	USP50	Q70EL3	339 aa	Predicted RBP	10.53	□□□□□ -0.72
NXF1-215	ENST00000533440	MCOLN1	Q9GZU1	580 aa		10.53	□□□□□ -0.72
NXF1-215	ENST00000533440	TSKS	Q9UJT2	592 aa		10.53	□□□□□ -0.72
NXF1-215	ENST00000533440	GJA3	Q9Y6H8	435 aa		10.53	□□□□□ -0.72
NXF1-215	ENST00000533440	COL3A1	P02461	1466 aa	Predicted RBP	10.53	□□□□□ -0.72
NXF1-215	ENST00000533440	PRAMEF22	A3QJZ6	481 aa		10.52	□□□□□ -0.73
NXF1-215	ENST00000533440	TRAF5	O00463	557 aa		10.52	□□□□□ -0.73
NXF1-215	ENST00000533440	AOC2	O75106	756 aa		10.52	□□□□□ -0.73
NXF1-215	ENST00000533440	POTED	Q86YR6	584 aa		10.52	□□□□□ -0.73
NXF1-215	ENST00000533440	NBPF26	B4DH59	902 aa		10.51	□□□□□ -0.73
NXF1-215	ENST00000533440	SNRPA1	P09661	255 aa	Known RBP	10.51	□□□□□ -0.73
NXF1-215	ENST00000533440	GRM1	Q13255	1194 aa		10.51	□□□□□ -0.73
NXF1-215	ENST00000533440	GRIPAP1	Q4V328	841 aa		10.51	□□□□□ -0.73
NXF1-215	ENST00000533440	NBPF10	Q6P3W6	841 aa	Known RBP	10.51	□□□□□ -0.73
NXF1-215	ENST00000533440	SAPCD2	Q86UD0	394 aa		10.51	□□□□□ -0.73
NXF1-215	ENST00000533440	NBPF15	Q8N660	670 aa		10.51	□□□□□ -0.73
NXF1-215	ENST00000533440	HHIPL1	Q96JK4	782 aa		10.51	□□□□□ -0.73
NXF1-215	ENST00000533440	FAM177B	A6PVY3	158 aa		10.5	□□□□□ -0.73
NXF1-215	ENST00000533440	PER1	O15534	1290 aa	Predicted RBP	10.5	□□□□□ -0.73
NXF1-215	ENST00000533440	HOXA10	P31260	410 aa	Predicted RBP	10.5	□□□□□ -0.73
NXF1-215	ENST00000533440	BRPF1	P55201	1214 aa	Predicted RBP	10.5	□□□□□ -0.73
NXF1-215	ENST00000533440	HLF	Q16534	295 aa		10.5	□□□□□ -0.73
NXF1-215	ENST00000533440	LARGE2	Q8N3Y3	721 aa		10.5	□□□□□ -0.73
NXF1-215	ENST00000533440	ADARB2	Q9NS39	739 aa	Known RBP	10.5	□□□□□ -0.73
NXF1-215	ENST00000533440	CASP8AP2	Q9UKL3	1982 aa		10.5	□□□□□ -0.73
NXF1-215	ENST00000533440	ABCC12	Q96J65	1359 aa		10.5	□□□□□ -0.73
NXF1-215	ENST00000533440	PDE4DIP	Q5VU43	2346 aa		10.5	□□□□□ -0.73
NXF1-215	ENST00000533440	RIC1	Q4ADV7	1423 aa		10.5	□□□□□ -0.73
NXF1-215	ENST00000533440	U2SURP	O15042	1029 aa	Known RBP	10.49	□□□□□ -0.73
NXF1-215	ENST00000533440	GTF2E1	P29083	439 aa	Predicted RBP	10.49	□□□□□ -0.73
NXF1-215	ENST00000533440	PHACTR3	Q96KR7	559 aa		10.49	□□□□□ -0.73
NXF1-215	ENST00000533440	CFAP44	Q96MT7	982 aa		10.49	□□□□□ -0.73
NXF1-215	ENST00000533440	NYX	Q9GZU5	481 aa		10.49	□□□□□ -0.73
NXF1-215	ENST00000533440	PGAP2	Q9UHJ9	254 aa		10.49	□□□□□ -0.73
NXF1-215	ENST00000533440	KIF7	Q2M1P5	1343 aa		10.49	□□□□□ -0.73
NXF1-215	ENST00000533440	CLSPN	Q9HAW4	1339 aa		10.49	□□□□□ -0.73
NXF1-215	ENST00000533440	CELF2	O95319	508 aa	Known RBP	10.48	□□□□□ -0.73
NXF1-215	ENST00000533440	DGKZ	Q13574	1117 aa		10.48	□□□□□ -0.73
NXF1-215	ENST00000533440	NUTM1	Q86Y26	1132 aa		10.48	□□□□□ -0.73
NXF1-215	ENST00000533440	GPRC5D	Q9NZD1	345 aa		10.48	□□□□□ -0.73
NXF1-215	ENST00000533440	ERVV-1	B6SEH8	477 aa		10.47	□□□□□ -0.73
NXF1-215	ENST00000533440	CC2D1B	Q5T0F9	858 aa	Known RBP	10.47	□□□□□ -0.73
NXF1-215	ENST00000533440	SLC51A	Q86UW1	340 aa		10.47	□□□□□ -0.73
NXF1-215	ENST00000533440	NIM1K	Q8IY84	436 aa		10.47	□□□□□ -0.73
NXF1-215	ENST00000533440	CRAMP1	Q96RY5	1269 aa		10.47	□□□□□ -0.73
NXF1-215	ENST00000533440	VPS33B	Q9H267	617 aa		10.47	□□□□□ -0.73
NXF1-215	ENST00000533440	IBTK	Q9P2D0	1353 aa	Predicted RBP	10.47	□□□□□ -0.73
NXF1-215	ENST00000533440	PPIP5K2	O43314	1243 aa		10.46	□□□□□ -0.73
NXF1-215	ENST00000533440	PRKAR2B	P31323	418 aa		10.46	□□□□□ -0.73
NXF1-215	ENST00000533440	CXCL9	Q07325	125 aa		10.46	□□□□□ -0.73
NXF1-215	ENST00000533440	CIAPIN1	Q6FI81	312 aa		10.46	□□□□□ -0.73
NXF1-215	ENST00000533440	ZC3H15	Q8WU90	426 aa	Known RBP	10.46	□□□□□ -0.73
NXF1-215	ENST00000533440	RPGR	Q92834	1020 aa	Known RBP	10.46	□□□□□ -0.73
NXF1-215	ENST00000533440	GLIS2	Q9BZE0	524 aa	Predicted RBP	10.46	□□□□□ -0.73
NXF1-215	ENST00000533440	RSPH6A	Q9H0K4	717 aa		10.46	□□□□□ -0.73
NXF1-215	ENST00000533440	NPC1L1	Q9UHC9	1359 aa		10.46	□□□□□ -0.74
NXF1-215	ENST00000533440	CDHR2	Q9BYE9	1310 aa		10.45	□□□□□ -0.74
NXF1-215	ENST00000533440	PPEF1	O14829	653 aa	Predicted RBP	10.45	□□□□□ -0.74
NXF1-215	ENST00000533440	HIRA	P54198	1017 aa	Predicted RBP	10.45	□□□□□ -0.74
NXF1-215	ENST00000533440	NOG	Q13253	232 aa		10.45	□□□□□ -0.74
NXF1-215	ENST00000533440	AOC3	Q16853	763 aa		10.45	□□□□□ -0.74
NXF1-215	ENST00000533440	MCM10	Q7L590	875 aa		10.45	□□□□□ -0.74
NXF1-215	ENST00000533440	RBM17	Q96I25	401 aa	Known RBP	10.45	□□□□□ -0.74
NXF1-215	ENST00000533440	ZIC5	Q96T25	663 aa		10.45	□□□□□ -0.74
NXF1-215	ENST00000533440	RTFDC1	Q9BY42	306 aa	Predicted RBP	10.45	□□□□□ -0.74
NXF1-215	ENST00000533440	ZNRF3	Q9ULT6	936 aa		10.45	□□□□□ -0.74
NXF1-215	ENST00000533440	NUP98	P52948	1817 aa		10.44	□□□□□ -0.74
NXF1-215	ENST00000533440	MAP3K15	Q6ZN16	1313 aa		10.44	□□□□□ -0.74
NXF1-215	ENST00000533440	UBN2	Q6ZU65	1347 aa		10.44	□□□□□ -0.74
NXF1-215	ENST00000533440	GMPS	P49915	693 aa	Predicted RBP	10.44	□□□□□ -0.74
NXF1-215	ENST00000533440	CDC37L1	Q7L3B6	337 aa		10.44	□□□□□ -0.74
NXF1-215	ENST00000533440	RTF1	Q92541	710 aa	Known RBP	10.44	□□□□□ -0.74
NXF1-215	ENST00000533440	ATP6V0A2	Q9Y487	856 aa		10.44	□□□□□ -0.74
NXF1-215	ENST00000533440	TCERG1	O14776	1098 aa	Known RBP	10.43	□□□□□ -0.74
NXF1-215	ENST00000533440	HTATSF1	O43719	755 aa	Known RBP	10.43	□□□□□ -0.74
NXF1-215	ENST00000533440	NTSR2	O95665	410 aa		10.43	□□□□□ -0.74
NXF1-215	ENST00000533440	SUSD4	Q5VX71	490 aa		10.43	□□□□□ -0.74
NXF1-215	ENST00000533440	TTLL7	Q6ZT98	887 aa		10.43	□□□□□ -0.74
NXF1-215	ENST00000533440	C3orf67	Q6ZVT6	689 aa		10.43	□□□□□ -0.74
NXF1-215	ENST00000533440	ZNF34	Q8IZ26	560 aa		10.43	□□□□□ -0.74
NXF1-215	ENST00000533440	ZNF408	Q9H9D4	720 aa		10.43	□□□□□ -0.74
NXF1-215	ENST00000533440	SAGE1	Q9NXZ1	904 aa		10.43	□□□□□ -0.74
NXF1-215	ENST00000533440	LAMB4	A4D0S4	1761 aa		10.43	□□□□□ -0.74
NXF1-215	ENST00000533440	GPT	P24298	496 aa		10.42	□□□□□ -0.74
NXF1-215	ENST00000533440	HUNK	P57058	714 aa		10.42	□□□□□ -0.74
NXF1-215	ENST00000533440	TRIM26	Q12899	539 aa	Predicted RBP	10.42	□□□□□ -0.74
NXF1-215	ENST00000533440	DCTN1	Q14203	1278 aa		10.42	□□□□□ -0.74
NXF1-215	ENST00000533440	TAF7	Q15545	349 aa	Predicted RBP	10.42	□□□□□ -0.74
NXF1-215	ENST00000533440	SUPT20H	Q8NEM7	779 aa		10.42	□□□□□ -0.74
NXF1-215	ENST00000533440	TRPM4	Q8TD43	1214 aa		10.42	□□□□□ -0.74
NXF1-215	ENST00000533440	FAM155A	B1AL88	458 aa	Predicted RBP	10.41	□□□□□ -0.74
NXF1-215	ENST00000533440	SOX10	P56693	466 aa		10.41	□□□□□ -0.74
NXF1-215	ENST00000533440	KIAA2012	Q0VF49	1180 aa		10.41	□□□□□ -0.74
NXF1-215	ENST00000533440	SLC10A5	Q5PT55	438 aa		10.41	□□□□□ -0.74
NXF1-215	ENST00000533440	PRPF38B	Q5VTL8	546 aa	Known RBP	10.41	□□□□□ -0.74
NXF1-215	ENST00000533440	KIF6	Q6ZMV9	814 aa		10.41	□□□□□ -0.74
NXF1-215	ENST00000533440	NGEF	Q8N5V2	710 aa		10.41	□□□□□ -0.74
NXF1-215	ENST00000533440	NLRP3	Q96P20	1036 aa		10.41	□□□□□ -0.74
NXF1-215	ENST00000533440	TMX4	Q9H1E5	349 aa	Predicted RBP	10.41	□□□□□ -0.74
NXF1-215	ENST00000533440	ABCC4	O15439	1325 aa		10.4	□□□□□ -0.74

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