RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 SRP68Q9UHB9 627 aaKnown RBP17.84■□□□□ 0.45
TRIM3-212ENST00000533064 COL24A1Q17RW2 1714 aa17.84■□□□□ 0.45
TRIM3-212ENST00000533064 CASZ1Q86V15 1759 aa17.84■□□□□ 0.45
TRIM3-212ENST00000533064 GNAI2P04899 355 aa17.83■□□□□ 0.45
TRIM3-212ENST00000533064 PARP10Q53GL7 1025 aa17.83■□□□□ 0.45
TRIM3-212ENST00000533064 ZNF34Q8IZ26 560 aa17.83■□□□□ 0.45
TRIM3-212ENST00000533064 NIP7Q9Y221 180 aaKnown RBP eCLIP17.83■□□□□ 0.45
TRIM3-212ENST00000533064 LAMB2P55268 1798 aa17.82■□□□□ 0.44
TRIM3-212ENST00000533064 NLRP10Q86W26 655 aa17.82■□□□□ 0.44
TRIM3-212ENST00000533064 ANO8Q9HCE9 1232 aaPredicted RBP17.82■□□□□ 0.44
TRIM3-212ENST00000533064 UTYO14607 1347 aa17.81■□□□□ 0.44
TRIM3-212ENST00000533064 NBPF7P0C2Y1 421 aaPredicted RBP17.81■□□□□ 0.44
TRIM3-212ENST00000533064 PPP1R42Q7Z4L9 355 aa17.81■□□□□ 0.44
TRIM3-212ENST00000533064 C1orf115Q9H7X2 142 aa17.81■□□□□ 0.44
TRIM3-212ENST00000533064 PNPLA7Q6ZV29 1317 aa17.81■□□□□ 0.44
TRIM3-212ENST00000533064 UBE3BQ7Z3V4 1068 aa17.8■□□□□ 0.44
TRIM3-212ENST00000533064 COL23A1Q86Y22 540 aaPredicted RBP17.8■□□□□ 0.44
TRIM3-212ENST00000533064 SETDB2Q96T68 719 aa17.8■□□□□ 0.44
TRIM3-212ENST00000533064 BCL2L12Q9HB09 334 aa17.8■□□□□ 0.44
TRIM3-212ENST00000533064 UBN2Q6ZU65 1347 aa17.8■□□□□ 0.44
TRIM3-212ENST00000533064 BICDL1Q6ZP65 573 aa17.8■□□□□ 0.44
TRIM3-212ENST00000533064 ZBTB38Q8NAP3 1195 aaPredicted RBP17.8■□□□□ 0.44
TRIM3-212ENST00000533064 TRMT112Q9UI30 125 aaKnown RBP17.8■□□□□ 0.44
TRIM3-212ENST00000533064 LRRFIP2Q9Y608 721 aaKnown RBP17.8■□□□□ 0.44
TRIM3-212ENST00000533064 DDX60Q8IY21 1712 aaKnown RBP17.79■□□□□ 0.44
TRIM3-212ENST00000533064 H7C1W4 665 aa17.79■□□□□ 0.44
TRIM3-212ENST00000533064 PCCAP05165 728 aaPredicted RBP17.79■□□□□ 0.44
TRIM3-212ENST00000533064 GYS1P13807 737 aa17.79■□□□□ 0.44
TRIM3-212ENST00000533064 TBC1D9BQ66K14 1250 aa17.79■□□□□ 0.44
TRIM3-212ENST00000533064 ILDR2Q71H61 639 aa17.79■□□□□ 0.44
TRIM3-212ENST00000533064 UTP14AQ9BVJ6 771 aaKnown RBP17.78■□□□□ 0.44
TRIM3-212ENST00000533064 FAM177BA6PVY3 158 aa17.77■□□□□ 0.44
TRIM3-212ENST00000533064 HSP90B1P14625 803 aaKnown RBP17.77■□□□□ 0.44
TRIM3-212ENST00000533064 RTL5Q5HYW3 569 aaPredicted RBP17.77■□□□□ 0.44
TRIM3-212ENST00000533064 RPAP2Q8IXW5 612 aaPredicted RBP17.77■□□□□ 0.44
TRIM3-212ENST00000533064 NYXQ9GZU5 481 aa17.77■□□□□ 0.44
TRIM3-212ENST00000533064 PCDHB15Q9Y5E8 787 aa17.77■□□□□ 0.44
TRIM3-212ENST00000533064 NPHP1O15259 732 aa17.77■□□□□ 0.43
TRIM3-212ENST00000533064 SUSD4Q5VX71 490 aa17.77■□□□□ 0.43
TRIM3-212ENST00000533064 NLGN1Q8N2Q7 840 aa17.77■□□□□ 0.43
TRIM3-212ENST00000533064 FAM89AQ96GI7 184 aa17.77■□□□□ 0.43
TRIM3-212ENST00000533064 RWDD1Q9H446 243 aaPredicted RBP17.77■□□□□ 0.43
TRIM3-212ENST00000533064 CARMIL3Q8ND23 1372 aa17.77■□□□□ 0.43
TRIM3-212ENST00000533064 SH3TC1Q8TE82 1336 aa17.76■□□□□ 0.43
TRIM3-212ENST00000533064 HMMRO75330 724 aa17.76■□□□□ 0.43
TRIM3-212ENST00000533064 GTF2E1P29083 439 aaPredicted RBP17.76■□□□□ 0.43
TRIM3-212ENST00000533064 JARID2Q92833 1246 aaPredicted RBP17.76■□□□□ 0.43
TRIM3-212ENST00000533064 SUCLG2Q96I99 432 aa17.76■□□□□ 0.43
TRIM3-212ENST00000533064 CDHR2Q9BYE9 1310 aa17.76■□□□□ 0.43
TRIM3-212ENST00000533064 CASP7P55210 303 aa17.75■□□□□ 0.43
TRIM3-212ENST00000533064 CEP85Q6P2H3 762 aa17.75■□□□□ 0.43
TRIM3-212ENST00000533064 NBPF5PQ86XG9 351 aaPredicted RBP17.75■□□□□ 0.43
TRIM3-212ENST00000533064 NTSR2O95665 410 aa17.74■□□□□ 0.43
TRIM3-212ENST00000533064 NFIXQ14938 502 aa17.74■□□□□ 0.43
TRIM3-212ENST00000533064 TPTE2Q6XPS3 522 aa17.74■□□□□ 0.43
TRIM3-212ENST00000533064 ANKRD44Q8N8A2 993 aa17.74■□□□□ 0.43
TRIM3-212ENST00000533064 IRS4O14654 1257 aaPredicted RBP17.74■□□□□ 0.43
TRIM3-212ENST00000533064 BICC1Q9H694 974 aaKnown RBP17.74■□□□□ 0.43
TRIM3-212ENST00000533064 ATP8B2P98198 1209 aa17.73■□□□□ 0.43
TRIM3-212ENST00000533064 HDAC1Q13547 482 aaPredicted RBP17.73■□□□□ 0.43
TRIM3-212ENST00000533064 PLA2G12BQ9BX93 195 aa17.72■□□□□ 0.43
TRIM3-212ENST00000533064 NRXN2Q9P2S2 1712 aa17.72■□□□□ 0.43
TRIM3-212ENST00000533064 PDE8AO60658 829 aa17.71■□□□□ 0.43
TRIM3-212ENST00000533064 TM4SF1P30408 202 aa17.71■□□□□ 0.43
TRIM3-212ENST00000533064 NUTM1Q86Y26 1132 aa17.71■□□□□ 0.43
TRIM3-212ENST00000533064 SLC16A10Q8TF71 515 aa17.71■□□□□ 0.43
TRIM3-212ENST00000533064 SPEF2Q9C093 1822 aa17.71■□□□□ 0.43
TRIM3-212ENST00000533064 SRGAP3O43295 1099 aa17.71■□□□□ 0.42
TRIM3-212ENST00000533064 MTX1Q13505 466 aa17.71■□□□□ 0.42
TRIM3-212ENST00000533064 SYNE4Q8N205 404 aa17.71■□□□□ 0.42
TRIM3-212ENST00000533064 CNBD1Q8NA66 436 aa17.71■□□□□ 0.42
TRIM3-212ENST00000533064 KAZALD1Q96I82 304 aa17.71■□□□□ 0.42
TRIM3-212ENST00000533064 CHMP3Q9Y3E7 222 aa17.71■□□□□ 0.42
TRIM3-212ENST00000533064 SERPINB2P05120 415 aa17.7■□□□□ 0.42
TRIM3-212ENST00000533064 LMBR1LQ6UX01 489 aa17.7■□□□□ 0.42
TRIM3-212ENST00000533064 CENPQQ7L2Z9 268 aaPredicted RBP17.7■□□□□ 0.42
TRIM3-212ENST00000533064 SIRT2Q8IXJ6 389 aa17.7■□□□□ 0.42
TRIM3-212ENST00000533064 PARP3Q9Y6F1 533 aa17.7■□□□□ 0.42
TRIM3-212ENST00000533064 PNMA6EA0A0J9YXQ4 647 aa17.69■□□□□ 0.42
TRIM3-212ENST00000533064 ST5P78524 1137 aa17.69■□□□□ 0.42
TRIM3-212ENST00000533064 FOXO4P98177 505 aa17.69■□□□□ 0.42
TRIM3-212ENST00000533064 RABL6Q3YEC7 729 aaPredicted RBP17.69■□□□□ 0.42
TRIM3-212ENST00000533064 ERFEQ4G0M1 354 aa17.69■□□□□ 0.42
TRIM3-212ENST00000533064 EPHA10Q5JZY3 1008 aa17.69■□□□□ 0.42
TRIM3-212ENST00000533064 MSL1Q68DK7 614 aa17.69■□□□□ 0.42
TRIM3-212ENST00000533064 KDM2BQ8NHM5 1336 aa17.69■□□□□ 0.42
TRIM3-212ENST00000533064 POLRMTO00411 1230 aaKnown RBP17.68■□□□□ 0.42
TRIM3-212ENST00000533064 IGHDP01880 384 aa17.68■□□□□ 0.42
TRIM3-212ENST00000533064 HCLS1P14317 486 aaPredicted RBP17.68■□□□□ 0.42
TRIM3-212ENST00000533064 SSH3Q8TE77 659 aa17.68■□□□□ 0.42
TRIM3-212ENST00000533064 TAF1P21675 1872 aa17.68■□□□□ 0.42
TRIM3-212ENST00000533064 ANKRD31Q8N7Z5 1873 aa17.68■□□□□ 0.42
TRIM3-212ENST00000533064 MMP10P09238 476 aa17.67■□□□□ 0.42
TRIM3-212ENST00000533064 CTSWP56202 376 aa17.67■□□□□ 0.42
TRIM3-212ENST00000533064 R3HDM1Q15032 1099 aaKnown RBP17.67■□□□□ 0.42
TRIM3-212ENST00000533064 DDR1Q08345 913 aa17.67■□□□□ 0.42
TRIM3-212ENST00000533064 GCC1Q96CN9 775 aa17.67■□□□□ 0.42
TRIM3-212ENST00000533064 POLA2Q14181 598 aa17.66■□□□□ 0.42
TRIM3-212ENST00000533064 CCDC57Q2TAC2 916 aa17.66■□□□□ 0.42
TRIM3-212ENST00000533064 SLC10A5Q5PT55 438 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms