RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 USP20Q9Y2K6 914 aa8.63□□□□□ -1.03
CD44-230ENST00000528922 FAM13AO94988 1023 aa8.62□□□□□ -1.03
CD44-230ENST00000528922 ZAP70P43403 619 aa8.62□□□□□ -1.03
CD44-230ENST00000528922 CTBSQ01459 385 aa8.62□□□□□ -1.03
CD44-230ENST00000528922 RNFT1Q5M7Z0 435 aa8.62□□□□□ -1.03
CD44-230ENST00000528922 IRF7Q92985 503 aa8.62□□□□□ -1.03
CD44-230ENST00000528922 WFS1O76024 890 aa8.61□□□□□ -1.03
CD44-230ENST00000528922 ARSDP51689 593 aa8.61□□□□□ -1.03
CD44-230ENST00000528922 KCNQ4P56696 695 aa8.61□□□□□ -1.03
CD44-230ENST00000528922 ARHGAP4P98171 946 aa8.61□□□□□ -1.03
CD44-230ENST00000528922 TRIM26Q12899 539 aaPredicted RBP8.61□□□□□ -1.03
CD44-230ENST00000528922 COL25A1Q9BXS0 654 aaPredicted RBP8.61□□□□□ -1.03
CD44-230ENST00000528922 PHF24Q9UPV7 400 aa8.61□□□□□ -1.03
CD44-230ENST00000528922 CD33P20138 364 aa8.6□□□□□ -1.03
CD44-230ENST00000528922 FGFR3P22607 806 aa8.6□□□□□ -1.03
CD44-230ENST00000528922 KRT76Q01546 638 aa8.6□□□□□ -1.03
CD44-230ENST00000528922 LAMC2Q13753 1193 aa8.6□□□□□ -1.03
CD44-230ENST00000528922 LCE2AQ5TA79 106 aaPredicted RBP8.6□□□□□ -1.03
CD44-230ENST00000528922 TREML4Q6UXN2 200 aa8.6□□□□□ -1.03
CD44-230ENST00000528922 RGL4Q8IZJ4 473 aa8.6□□□□□ -1.03
CD44-230ENST00000528922 GZF1Q9H116 711 aaPredicted RBP8.6□□□□□ -1.03
CD44-230ENST00000528922 MARK1Q9P0L2 795 aa8.6□□□□□ -1.03
CD44-230ENST00000528922 KCNH4Q9UQ05 1017 aa8.6□□□□□ -1.03
CD44-230ENST00000528922 RTCBQ9Y3I0 505 aaKnown RBP8.6□□□□□ -1.03
CD44-230ENST00000528922 C2CD2LO14523 706 aa8.59□□□□□ -1.03
CD44-230ENST00000528922 FZD6O60353 706 aa8.59□□□□□ -1.03
CD44-230ENST00000528922 GPR152Q8TDT2 470 aa8.59□□□□□ -1.03
CD44-230ENST00000528922 CCDC87Q9NVE4 849 aa8.59□□□□□ -1.03
CD44-230ENST00000528922 ZBTB7CA1YPR0 619 aa8.58□□□□□ -1.04
CD44-230ENST00000528922 GMPRP36959 345 aa8.58□□□□□ -1.04
CD44-230ENST00000528922 ALKBH2Q6NS38 261 aa8.58□□□□□ -1.04
CD44-230ENST00000528922 AAMPQ13685 434 aa8.57□□□□□ -1.04
CD44-230ENST00000528922 FAM182BQ5T319 152 aa8.57□□□□□ -1.04
CD44-230ENST00000528922 CMTR1Q8N1G2 835 aaKnown RBP8.57□□□□□ -1.04
CD44-230ENST00000528922 EDEM1Q92611 657 aa8.57□□□□□ -1.04
CD44-230ENST00000528922 SLC30A3Q99726 388 aa8.57□□□□□ -1.04
CD44-230ENST00000528922 BIN2Q9UBW5 565 aaPredicted RBP8.57□□□□□ -1.04
CD44-230ENST00000528922 KCNMB2Q9Y691 235 aa8.57□□□□□ -1.04
CD44-230ENST00000528922 MX2P20592 715 aa8.56□□□□□ -1.04
CD44-230ENST00000528922 DNM1Q05193 864 aaKnown RBP8.56□□□□□ -1.04
CD44-230ENST00000528922 PIK3R5Q8WYR1 880 aa8.56□□□□□ -1.04
CD44-230ENST00000528922 POLIQ9UNA4 740 aa8.56□□□□□ -1.04
CD44-230ENST00000528922 PDGFAP04085 211 aa8.55□□□□□ -1.04
CD44-230ENST00000528922 EPB42P16452 691 aa8.55□□□□□ -1.04
CD44-230ENST00000528922 SPEM2Q0P670 501 aa8.55□□□□□ -1.04
CD44-230ENST00000528922 TRIP4Q15650 581 aaPredicted RBP8.55□□□□□ -1.04
CD44-230ENST00000528922 SND1Q7KZF4 910 aaKnown RBP eCLIP8.55□□□□□ -1.04
CD44-230ENST00000528922 NUDT16Q96DE0 195 aaKnown RBP8.55□□□□□ -1.04
CD44-230ENST00000528922 CNTNAP3BQ96NU0 1288 aa8.55□□□□□ -1.04
CD44-230ENST00000528922 CNTNAP3Q9BZ76 1288 aa8.55□□□□□ -1.04
CD44-230ENST00000528922 GSX2Q9BZM3 304 aa8.55□□□□□ -1.04
CD44-230ENST00000528922 MBIPQ9NS73 344 aa8.55□□□□□ -1.04
CD44-230ENST00000528922 FAM13BQ9NYF5 915 aa8.55□□□□□ -1.04
CD44-230ENST00000528922 BMP4P12644 408 aa8.54□□□□□ -1.04
CD44-230ENST00000528922 MZF1P28698 734 aaPredicted RBP8.54□□□□□ -1.04
CD44-230ENST00000528922 GGNBP2Q9H3C7 697 aa8.54□□□□□ -1.04
CD44-230ENST00000528922 XYLBO75191 536 aa8.54□□□□□ -1.04
CD44-230ENST00000528922 RAB44Q7Z6P3 723 aaPredicted RBP8.54□□□□□ -1.04
CD44-230ENST00000528922 C11orf16Q9NQ32 467 aa8.54□□□□□ -1.04
CD44-230ENST00000528922 IGF1RP08069 1367 aa8.53□□□□□ -1.04
CD44-230ENST00000528922 EGFRP00533 1210 aa8.53□□□□□ -1.04
CD44-230ENST00000528922 CCINQ13939 588 aa8.53□□□□□ -1.04
CD44-230ENST00000528922 BRPF3Q9ULD4 1205 aa8.53□□□□□ -1.04
CD44-230ENST00000528922 A6NHS1 94 aa8.52□□□□□ -1.05
CD44-230ENST00000528922 UBAP1LF5GYI3 381 aa8.52□□□□□ -1.05
CD44-230ENST00000528922 SASH3O75995 380 aa8.52□□□□□ -1.05
CD44-230ENST00000528922 TARSP26639 723 aaKnown RBP8.52□□□□□ -1.05
CD44-230ENST00000528922 SRSF11Q05519 484 aaKnown RBP8.52□□□□□ -1.05
CD44-230ENST00000528922 KLF15Q9UIH9 416 aa8.52□□□□□ -1.05
CD44-230ENST00000528922 PRR12Q9ULL5 1215 aa8.52□□□□□ -1.05
CD44-230ENST00000528922 KRT25Q7Z3Z0 450 aa8.51□□□□□ -1.05
CD44-230ENST00000528922 GJD3Q8N144 294 aa8.51□□□□□ -1.05
CD44-230ENST00000528922 BHMTQ93088 406 aa8.51□□□□□ -1.05
CD44-230ENST00000528922 ZFATQ9P243 1243 aa8.51□□□□□ -1.05
CD44-230ENST00000528922 NDUFB5O43674 189 aa8.5□□□□□ -1.05
CD44-230ENST00000528922 ADAMTS2O95450 1211 aa8.5□□□□□ -1.05
CD44-230ENST00000528922 PCSK2P16519 638 aa8.5□□□□□ -1.05
CD44-230ENST00000528922 NFKB1P19838 968 aa8.5□□□□□ -1.05
CD44-230ENST00000528922 MAP2K3P46734 347 aa8.5□□□□□ -1.05
CD44-230ENST00000528922 PCBP4P57723 403 aaKnown RBP8.5□□□□□ -1.05
CD44-230ENST00000528922 C8orf34Q49A92 452 aa8.5□□□□□ -1.05
CD44-230ENST00000528922 ZNF468Q5VIY5 522 aaPredicted RBP8.5□□□□□ -1.05
CD44-230ENST00000528922 DCTN4Q9UJW0 460 aa8.5□□□□□ -1.05
CD44-230ENST00000528922 NSFL1CQ9UNZ2 370 aaKnown RBP8.5□□□□□ -1.05
CD44-230ENST00000528922 FNDC3AQ9Y2H6 1198 aaKnown RBP8.5□□□□□ -1.05
CD44-230ENST00000528922 IGHA2P01877 340 aa8.49□□□□□ -1.05
CD44-230ENST00000528922 SLURP2P0DP57 97 aa8.49□□□□□ -1.05
CD44-230ENST00000528922 USP5P45974 858 aa8.49□□□□□ -1.05
CD44-230ENST00000528922 MARSP56192 900 aaKnown RBP8.49□□□□□ -1.05
CD44-230ENST00000528922 SYT9Q86SS6 491 aa8.49□□□□□ -1.05
CD44-230ENST00000528922 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.49□□□□□ -1.05
CD44-230ENST00000528922 RPLP1P05386 114 aaKnown RBP8.48□□□□□ -1.05
CD44-230ENST00000528922 ARAFP10398 606 aa8.48□□□□□ -1.05
CD44-230ENST00000528922 MAPK1P28482 360 aa8.48□□□□□ -1.05
CD44-230ENST00000528922 XKR5Q6UX68 686 aa8.48□□□□□ -1.05
CD44-230ENST00000528922 NLRP13Q86W25 1043 aa8.48□□□□□ -1.05
CD44-230ENST00000528922 ACDQ96AP0 544 aa8.48□□□□□ -1.05
CD44-230ENST00000528922 CITED4Q96RK1 184 aa8.48□□□□□ -1.05
CD44-230ENST00000528922 RBCK1Q9BYM8 510 aa8.48□□□□□ -1.05
CD44-230ENST00000528922 NEURL1BA8MQ27 555 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms