RNA–Protein interactions for RNA: ENST00000527699.5

CAPN1-210, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 564 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-210ENST00000527699 RTF1Q92541 710 aaKnown RBP13.22□□□□□ -0.29
CAPN1-210ENST00000527699 ZNF408Q9H9D4 720 aa13.22□□□□□ -0.29
CAPN1-210ENST00000527699 NUDCQ9Y266 331 aa13.22□□□□□ -0.29
CAPN1-210ENST00000527699 SIPA1L3O60292 1781 aaPredicted RBP13.22□□□□□ -0.29
CAPN1-210ENST00000527699 SRGNP10124 158 aa13.21□□□□□ -0.29
CAPN1-210ENST00000527699 PPP2R1AP30153 589 aa13.21□□□□□ -0.29
CAPN1-210ENST00000527699 CEMIPQ8WUJ3 1361 aa13.2□□□□□ -0.3
CAPN1-210ENST00000527699 NBPF26B4DH59 902 aa13.2□□□□□ -0.3
CAPN1-210ENST00000527699 NOGQ13253 232 aa13.2□□□□□ -0.3
CAPN1-210ENST00000527699 HLFQ16534 295 aa13.2□□□□□ -0.3
CAPN1-210ENST00000527699 SOGA3Q5TF21 947 aa13.2□□□□□ -0.3
CAPN1-210ENST00000527699 NBPF10Q6P3W6 841 aaKnown RBP13.2□□□□□ -0.3
CAPN1-210ENST00000527699 CNKSR1Q969H4 720 aa13.2□□□□□ -0.3
CAPN1-210ENST00000527699 MASTLQ96GX5 879 aa13.2□□□□□ -0.3
CAPN1-210ENST00000527699 ZIC5Q96T25 663 aa13.2□□□□□ -0.3
CAPN1-210ENST00000527699 GJA3Q9Y6H8 435 aa13.2□□□□□ -0.3
CAPN1-210ENST00000527699 SLX4Q8IY92 1834 aa13.2□□□□□ -0.3
CAPN1-210ENST00000527699 TRIOBPQ9H2D6 2365 aa13.19□□□□□ -0.3
CAPN1-210ENST00000527699 TRPA1O75762 1119 aa13.19□□□□□ -0.3
CAPN1-210ENST00000527699 SNRPA1P09661 255 aaKnown RBP13.19□□□□□ -0.3
CAPN1-210ENST00000527699 STYK1Q6J9G0 422 aa13.19□□□□□ -0.3
CAPN1-210ENST00000527699 ZNF277Q9NRM2 450 aaPredicted RBP13.19□□□□□ -0.3
CAPN1-210ENST00000527699 NIP7Q9Y221 180 aaKnown RBP eCLIP13.19□□□□□ -0.3
CAPN1-210ENST00000527699 NPC1L1Q9UHC9 1359 aa13.19□□□□□ -0.3
CAPN1-210ENST00000527699 PITPNM2Q9BZ72 1349 aa13.18□□□□□ -0.3
CAPN1-210ENST00000527699 SLC51AQ86UW1 340 aa13.18□□□□□ -0.3
CAPN1-210ENST00000527699 THUMPD2Q9BTF0 503 aaKnown RBP13.18□□□□□ -0.3
CAPN1-210ENST00000527699 COLQQ9Y215 455 aaPredicted RBP13.18□□□□□ -0.3
CAPN1-210ENST00000527699 AKAP11Q9UKA4 1901 aa13.17□□□□□ -0.3
CAPN1-210ENST00000527699 TCERG1O14776 1098 aaKnown RBP13.17□□□□□ -0.3
CAPN1-210ENST00000527699 GTF2E1P29083 439 aaPredicted RBP13.17□□□□□ -0.3
CAPN1-210ENST00000527699 NUTM1Q86Y26 1132 aa13.17□□□□□ -0.3
CAPN1-210ENST00000527699 HDAC9Q9UKV0 1011 aa13.17□□□□□ -0.3
CAPN1-210ENST00000527699 PDZRN3Q9UPQ7 1066 aa13.17□□□□□ -0.3
CAPN1-210ENST00000527699 RRP7AQ9Y3A4 280 aaKnown RBP13.17□□□□□ -0.3
CAPN1-210ENST00000527699 A0A0C4DFX4 3053 aa13.17□□□□□ -0.3
CAPN1-210ENST00000527699 MYL6BP14649 208 aa13.16□□□□□ -0.3
CAPN1-210ENST00000527699 GPC2Q8N158 579 aa13.16□□□□□ -0.3
CAPN1-210ENST00000527699 SYNE4Q8N205 404 aa13.16□□□□□ -0.3
CAPN1-210ENST00000527699 HHIPL1Q96JK4 782 aa13.16□□□□□ -0.3
CAPN1-210ENST00000527699 SAGE1Q9NXZ1 904 aa13.16□□□□□ -0.3
CAPN1-210ENST00000527699 ZNF652Q9Y2D9 606 aa13.16□□□□□ -0.3
CAPN1-210ENST00000527699 BCORQ6W2J9 1755 aa13.16□□□□□ -0.3
CAPN1-210ENST00000527699 NPR1P16066 1061 aa13.15□□□□□ -0.3
CAPN1-210ENST00000527699 TAF7Q15545 349 aaPredicted RBP13.15□□□□□ -0.3
CAPN1-210ENST00000527699 CCDC93Q567U6 631 aa13.15□□□□□ -0.3
CAPN1-210ENST00000527699 TPTE2Q6XPS3 522 aa13.15□□□□□ -0.3
CAPN1-210ENST00000527699 RNF186Q9NXI6 227 aa13.15□□□□□ -0.3
CAPN1-210ENST00000527699 GPTP24298 496 aa13.14□□□□□ -0.31
CAPN1-210ENST00000527699 EPS15P42566 896 aa13.14□□□□□ -0.31
CAPN1-210ENST00000527699 FKBP4Q02790 459 aaKnown RBP eCLIP13.14□□□□□ -0.31
CAPN1-210ENST00000527699 PKN2Q16513 984 aaKnown RBP13.14□□□□□ -0.31
CAPN1-210ENST00000527699 TTLL7Q6ZT98 887 aa13.14□□□□□ -0.31
CAPN1-210ENST00000527699 C7orf43Q8WVR3 580 aa13.14□□□□□ -0.31
CAPN1-210ENST00000527699 ZNF428Q96B54 188 aa13.14□□□□□ -0.31
CAPN1-210ENST00000527699 ZBTB3Q9H5J0 574 aa13.14□□□□□ -0.31
CAPN1-210ENST00000527699 EIF6P56537 245 aaKnown RBP13.13□□□□□ -0.31
CAPN1-210ENST00000527699 HUNKP57058 714 aa13.13□□□□□ -0.31
CAPN1-210ENST00000527699 CLEC4GQ6UXB4 293 aa13.13□□□□□ -0.31
CAPN1-210ENST00000527699 ABCC12Q96J65 1359 aa13.12□□□□□ -0.31
CAPN1-210ENST00000527699 USP50Q70EL3 339 aaPredicted RBP13.12□□□□□ -0.31
CAPN1-210ENST00000527699 JDP2Q8WYK2 163 aa13.12□□□□□ -0.31
CAPN1-210ENST00000527699 GLIS2Q9BZE0 524 aaPredicted RBP13.12□□□□□ -0.31
CAPN1-210ENST00000527699 SZT2Q5T011 3432 aa13.11□□□□□ -0.31
CAPN1-210ENST00000527699 FZD9O00144 591 aa13.11□□□□□ -0.31
CAPN1-210ENST00000527699 NEFMP07197 916 aa13.11□□□□□ -0.31
CAPN1-210ENST00000527699 IARSP41252 1262 aaKnown RBP13.11□□□□□ -0.31
CAPN1-210ENST00000527699 MNX1P50219 401 aaPredicted RBP13.11□□□□□ -0.31
CAPN1-210ENST00000527699 KIF23Q02241 960 aaPredicted RBP13.11□□□□□ -0.31
CAPN1-210ENST00000527699 NECTIN2Q92692 538 aa13.11□□□□□ -0.31
CAPN1-210ENST00000527699 HTATSF1O43719 755 aaKnown RBP13.1□□□□□ -0.31
CAPN1-210ENST00000527699 ANXA1P04083 346 aa13.1□□□□□ -0.31
CAPN1-210ENST00000527699 EIF2S2P20042 333 aaKnown RBP13.1□□□□□ -0.31
CAPN1-210ENST00000527699 EIF4A1P60842 406 aaKnown RBP13.1□□□□□ -0.31
CAPN1-210ENST00000527699 SUSD4Q5VX71 490 aa13.1□□□□□ -0.31
CAPN1-210ENST00000527699 KIF6Q6ZMV9 814 aa13.1□□□□□ -0.31
CAPN1-210ENST00000527699 CEP290O15078 2479 aa13.09□□□□□ -0.31
CAPN1-210ENST00000527699 C3orf67Q6ZVT6 689 aa13.09□□□□□ -0.31
CAPN1-210ENST00000527699 RTKN2Q8IZC4 609 aa13.09□□□□□ -0.31
CAPN1-210ENST00000527699 RPGRQ92834 1020 aaKnown RBP13.09□□□□□ -0.31
CAPN1-210ENST00000527699 ARFGEF2Q9Y6D5 1785 aa13.09□□□□□ -0.31
CAPN1-210ENST00000527699 MAP3K15Q6ZN16 1313 aa13.09□□□□□ -0.31
CAPN1-210ENST00000527699 UBN2Q6ZU65 1347 aa13.09□□□□□ -0.31
CAPN1-210ENST00000527699 KLRG2A4D1S0 409 aaPredicted RBP13.08□□□□□ -0.32
CAPN1-210ENST00000527699 ALDH1B1P30837 517 aa13.08□□□□□ -0.32
CAPN1-210ENST00000527699 SCNN1DP51172 638 aa13.08□□□□□ -0.32
CAPN1-210ENST00000527699 PLEKHF1Q96S99 279 aa13.08□□□□□ -0.32
CAPN1-210ENST00000527699 MKI67P46013 3256 aaKnown RBP13.08□□□□□ -0.32
CAPN1-210ENST00000527699 ZEB1P37275 1124 aaPredicted RBP13.07□□□□□ -0.32
CAPN1-210ENST00000527699 NFE2L2Q16236 605 aa13.07□□□□□ -0.32
CAPN1-210ENST00000527699 RGMBQ6NW40 437 aa13.07□□□□□ -0.32
CAPN1-210ENST00000527699 FBXO46Q6PJ61 603 aaPredicted RBP13.07□□□□□ -0.32
CAPN1-210ENST00000527699 PNISRQ8TF01 805 aaKnown RBP13.07□□□□□ -0.32
CAPN1-210ENST00000527699 NYXQ9GZU5 481 aa13.07□□□□□ -0.32
CAPN1-210ENST00000527699 COL4A5P29400 1685 aa13.06□□□□□ -0.32
CAPN1-210ENST00000527699 POTEFA5A3E0 1075 aa13.06□□□□□ -0.32
CAPN1-210ENST00000527699 ZNF157P51786 506 aaPredicted RBP13.06□□□□□ -0.32
CAPN1-210ENST00000527699 AIMP1Q12904 312 aaKnown RBP13.06□□□□□ -0.32
CAPN1-210ENST00000527699 TSPYL4Q9UJ04 414 aa13.06□□□□□ -0.32
CAPN1-210ENST00000527699 MAPK8IP3Q9UPT6 1336 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms