RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 ADRA2BP18089 450 aa23.39■■□□□ 1.34
VPS28-207ENST00000526977 ZNF34Q8IZ26 560 aa23.39■■□□□ 1.34
VPS28-207ENST00000526977 DDRGK1Q96HY6 314 aa23.39■■□□□ 1.34
VPS28-207ENST00000526977 TRAPPC3LQ5T215 181 aa23.38■■□□□ 1.33
VPS28-207ENST00000526977 NARFQ9UHQ1 456 aa23.38■■□□□ 1.33
VPS28-207ENST00000526977 MTX1Q13505 466 aa23.38■■□□□ 1.33
VPS28-207ENST00000526977 UBE3BQ7Z3V4 1068 aa23.38■■□□□ 1.33
VPS28-207ENST00000526977 NLRP10Q86W26 655 aa23.38■■□□□ 1.33
VPS28-207ENST00000526977 AFDNP55196 1824 aaKnown RBP23.38■■□□□ 1.33
VPS28-207ENST00000526977 CASP7P55210 303 aa23.37■■□□□ 1.33
VPS28-207ENST00000526977 SUCLG2Q96I99 432 aa23.37■■□□□ 1.33
VPS28-207ENST00000526977 ZPR1O75312 459 aa23.37■■□□□ 1.33
VPS28-207ENST00000526977 ARHGEF1Q92888 912 aaKnown RBP23.37■■□□□ 1.33
VPS28-207ENST00000526977 GPTP24298 496 aa23.36■■□□□ 1.33
VPS28-207ENST00000526977 PPP1R42Q7Z4L9 355 aa23.36■■□□□ 1.33
VPS28-207ENST00000526977 ZBTB38Q8NAP3 1195 aaPredicted RBP23.36■■□□□ 1.33
VPS28-207ENST00000526977 SSH3Q8TE77 659 aa23.36■■□□□ 1.33
VPS28-207ENST00000526977 KAZALD1Q96I82 304 aa23.36■■□□□ 1.33
VPS28-207ENST00000526977 NUP98P52948 1817 aa23.35■■□□□ 1.33
VPS28-207ENST00000526977 PNMA6EA0A0J9YXQ4 647 aa23.35■■□□□ 1.33
VPS28-207ENST00000526977 PCCAP05165 728 aaPredicted RBP23.35■■□□□ 1.33
VPS28-207ENST00000526977 PARP10Q53GL7 1025 aa23.35■■□□□ 1.33
VPS28-207ENST00000526977 TNS1Q9HBL0 1735 aaKnown RBP23.35■■□□□ 1.33
VPS28-207ENST00000526977 RFC4P35249 363 aa23.35■■□□□ 1.33
VPS28-207ENST00000526977 SF3B2Q13435 895 aaKnown RBP23.35■■□□□ 1.33
VPS28-207ENST00000526977 SRGAP3O43295 1099 aa23.34■■□□□ 1.33
VPS28-207ENST00000526977 SSFA2P28290 1259 aa23.34■■□□□ 1.33
VPS28-207ENST00000526977 BICC1Q9H694 974 aaKnown RBP23.34■■□□□ 1.33
VPS28-207ENST00000526977 POLA2Q14181 598 aa23.33■■□□□ 1.33
VPS28-207ENST00000526977 BMP2KLQ5H9B9 411 aa23.33■■□□□ 1.33
VPS28-207ENST00000526977 RGPD3A6NKT7 1758 aaPredicted RBP23.33■■□□□ 1.32
VPS28-207ENST00000526977 RGPD4Q7Z3J3 1758 aa23.33■■□□□ 1.32
VPS28-207ENST00000526977 JARID2Q92833 1246 aaPredicted RBP23.33■■□□□ 1.32
VPS28-207ENST00000526977 NIP7Q9Y221 180 aaKnown RBP eCLIP23.33■■□□□ 1.32
VPS28-207ENST00000526977 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.32■■□□□ 1.32
VPS28-207ENST00000526977 USPL1Q5W0Q7 1092 aa23.32■■□□□ 1.32
VPS28-207ENST00000526977 AMIGO3Q86WK7 504 aa23.32■■□□□ 1.32
VPS28-207ENST00000526977 PHF14O94880 888 aa23.32■■□□□ 1.32
VPS28-207ENST00000526977 RABL6Q3YEC7 729 aaPredicted RBP23.32■■□□□ 1.32
VPS28-207ENST00000526977 SMIM5Q71RC9 77 aa23.32■■□□□ 1.32
VPS28-207ENST00000526977 TRMT112Q9UI30 125 aaKnown RBP23.32■■□□□ 1.32
VPS28-207ENST00000526977 ANKRD36CQ5JPF3 1778 aa23.31■■□□□ 1.32
VPS28-207ENST00000526977 UBN2Q6ZU65 1347 aa23.31■■□□□ 1.32
VPS28-207ENST00000526977 PLEKHM2Q8IWE5 1019 aa23.31■■□□□ 1.32
VPS28-207ENST00000526977 C16orf71Q8IYS4 520 aaPredicted RBP23.31■■□□□ 1.32
VPS28-207ENST00000526977 FAM89AQ96GI7 184 aa23.31■■□□□ 1.32
VPS28-207ENST00000526977 CAMKK2Q96RR4 588 aa23.31■■□□□ 1.32
VPS28-207ENST00000526977 CDHR2Q9BYE9 1310 aa23.31■■□□□ 1.32
VPS28-207ENST00000526977 RTL5Q5HYW3 569 aaPredicted RBP23.3■■□□□ 1.32
VPS28-207ENST00000526977 UPF2Q9HAU5 1272 aaKnown RBP23.3■■□□□ 1.32
VPS28-207ENST00000526977 BCL2L12Q9HB09 334 aa23.3■■□□□ 1.32
VPS28-207ENST00000526977 USP42Q9H9J4 1324 aaKnown RBP23.3■■□□□ 1.32
VPS28-207ENST00000526977 BCORQ6W2J9 1755 aa23.3■■□□□ 1.32
VPS28-207ENST00000526977 BAG6P46379 1132 aa23.3■■□□□ 1.32
VPS28-207ENST00000526977 EPHA10Q5JZY3 1008 aa23.3■■□□□ 1.32
VPS28-207ENST00000526977 CCDC125Q86Z20 511 aa23.3■■□□□ 1.32
VPS28-207ENST00000526977 AKT1S1Q96B36 256 aa23.3■■□□□ 1.32
VPS28-207ENST00000526977 UTP14AQ9BVJ6 771 aaKnown RBP23.3■■□□□ 1.32
VPS28-207ENST00000526977 PLA2G12BQ9BX93 195 aa23.3■■□□□ 1.32
VPS28-207ENST00000526977 SUSD4Q5VX71 490 aa23.29■■□□□ 1.32
VPS28-207ENST00000526977 SRP68Q9UHB9 627 aaKnown RBP23.29■■□□□ 1.32
VPS28-207ENST00000526977 FOXO4P98177 505 aa23.28■■□□□ 1.32
VPS28-207ENST00000526977 EN1Q05925 392 aaPredicted RBP23.28■■□□□ 1.32
VPS28-207ENST00000526977 TBC1D32Q96NH3 1257 aa23.28■■□□□ 1.32
VPS28-207ENST00000526977 TFCP2L1Q9NZI6 479 aa23.28■■□□□ 1.32
VPS28-207ENST00000526977 SMARCA5O60264 1052 aaPredicted RBP23.28■■□□□ 1.32
VPS28-207ENST00000526977 HSP90B1P14625 803 aaKnown RBP23.28■■□□□ 1.32
VPS28-207ENST00000526977 FLAD1Q8NFF5 587 aa23.28■■□□□ 1.32
VPS28-207ENST00000526977 APBB1O00213 710 aa23.27■■□□□ 1.32
VPS28-207ENST00000526977 EZH2Q15910 746 aaKnown RBP23.27■■□□□ 1.32
VPS28-207ENST00000526977 HSP90AB4PQ58FF6 505 aa23.27■■□□□ 1.32
VPS28-207ENST00000526977 UBR3Q6ZT12 1888 aa23.27■■□□□ 1.32
VPS28-207ENST00000526977 SH3TC1Q8TE82 1336 aa23.27■■□□□ 1.31
VPS28-207ENST00000526977 SETDB2Q96T68 719 aa23.26■■□□□ 1.31
VPS28-207ENST00000526977 SCN7AQ01118 1682 aa23.26■■□□□ 1.31
VPS28-207ENST00000526977 SURF6O75683 361 aaKnown RBP23.26■■□□□ 1.31
VPS28-207ENST00000526977 TBC1D9BQ66K14 1250 aa23.26■■□□□ 1.31
VPS28-207ENST00000526977 LMBR1LQ6UX01 489 aa23.26■■□□□ 1.31
VPS28-207ENST00000526977 IRS4O14654 1257 aaPredicted RBP23.25■■□□□ 1.31
VPS28-207ENST00000526977 RAB11FIP3O75154 756 aa23.25■■□□□ 1.31
VPS28-207ENST00000526977 ZNF827Q17R98 1081 aa23.25■■□□□ 1.31
VPS28-207ENST00000526977 OTUD7AQ8TE49 926 aaPredicted RBP23.25■■□□□ 1.31
VPS28-207ENST00000526977 BCL11AQ9H165 835 aa23.25■■□□□ 1.31
VPS28-207ENST00000526977 EXOC6BQ9Y2D4 811 aa23.25■■□□□ 1.31
VPS28-207ENST00000526977 NTSR2O95665 410 aa23.24■■□□□ 1.31
VPS28-207ENST00000526977 SLC4A3P48751 1232 aa23.24■■□□□ 1.31
VPS28-207ENST00000526977 PDE8AO60658 829 aa23.23■■□□□ 1.31
VPS28-207ENST00000526977 NYXQ9GZU5 481 aa23.23■■□□□ 1.31
VPS28-207ENST00000526977 CSF1RP07333 972 aa23.23■■□□□ 1.31
VPS28-207ENST00000526977 GSPT1P15170 499 aaKnown RBP23.23■■□□□ 1.31
VPS28-207ENST00000526977 MFAP1P55081 439 aaKnown RBP23.23■■□□□ 1.31
VPS28-207ENST00000526977 C4AP0C0L4 1744 aa23.22■■□□□ 1.31
VPS28-207ENST00000526977 FAM177BA6PVY3 158 aa23.22■■□□□ 1.31
VPS28-207ENST00000526977 BICDL1Q6ZP65 573 aa23.22■■□□□ 1.31
VPS28-207ENST00000526977 SYNE4Q8N205 404 aa23.22■■□□□ 1.31
VPS28-207ENST00000526977 LRRCC1Q9C099 1032 aa23.22■■□□□ 1.31
VPS28-207ENST00000526977 TTC22Q5TAA0 569 aa23.21■■□□□ 1.31
VPS28-207ENST00000526977 COPRSQ9NQ92 184 aa23.21■■□□□ 1.31
VPS28-207ENST00000526977 GYS1P13807 737 aa23.21■■□□□ 1.31
VPS28-207ENST00000526977 C22orf23Q9BZE7 217 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms