RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 GPRASP1Q5JY77 1395 aa6.95□□□□□ -1.3
CD44-218ENST00000525469 PPLO60437 1756 aa6.95□□□□□ -1.3
CD44-218ENST00000525469 PER1O15534 1290 aaPredicted RBP6.95□□□□□ -1.3
CD44-218ENST00000525469 SMCPP49901 116 aaPredicted RBP6.95□□□□□ -1.3
CD44-218ENST00000525469 BRPF1P55201 1214 aaPredicted RBP6.95□□□□□ -1.3
CD44-218ENST00000525469 PMFBP1Q8TBY8 1022 aa6.95□□□□□ -1.3
CD44-218ENST00000525469 PDGFDQ9GZP0 370 aaPredicted RBP6.95□□□□□ -1.3
CD44-218ENST00000525469 NRXN1Q9ULB1 1477 aa6.95□□□□□ -1.3
CD44-218ENST00000525469 SHANK3Q9BYB0 1731 aa6.95□□□□□ -1.3
CD44-218ENST00000525469 ZC3H4Q9UPT8 1303 aaKnown RBP6.95□□□□□ -1.3
CD44-218ENST00000525469 AP1G2O75843 785 aa6.94□□□□□ -1.3
CD44-218ENST00000525469 SMPD1P17405 629 aa6.94□□□□□ -1.3
CD44-218ENST00000525469 TCP11L2Q8N4U5 519 aa6.94□□□□□ -1.3
CD44-218ENST00000525469 MPNDQ8N594 471 aa6.94□□□□□ -1.3
CD44-218ENST00000525469 TECPR2O15040 1411 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 KNDC1Q76NI1 1749 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 GRIN3BO60391 1043 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 CHRNA2Q15822 529 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 SLC15A2Q16348 729 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 TMEM259Q4ZIN3 620 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 ZNF787Q6DD87 383 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 PROCA1Q8NCQ7 364 aaPredicted RBP6.93□□□□□ -1.3
CD44-218ENST00000525469 IL27Q8NEV9 243 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 AAASQ9NRG9 546 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 PODXL2Q9NZ53 605 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 ALS2Q96Q42 1657 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 MAP3K5Q99683 1374 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 OVOS2A0A0G2JMS6 1433 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 OVOS2A0A0J9YW53 1432 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 OVOS2Q6IE36 1432 aa6.93□□□□□ -1.3
CD44-218ENST00000525469 J3QL48 77 aa6.92□□□□□ -1.3
CD44-218ENST00000525469 LCE2BO14633 110 aa6.92□□□□□ -1.3
CD44-218ENST00000525469 SIAH2O43255 324 aa6.92□□□□□ -1.3
CD44-218ENST00000525469 POLD1P28340 1107 aa6.92□□□□□ -1.3
CD44-218ENST00000525469 PRELPP51888 382 aa6.92□□□□□ -1.3
CD44-218ENST00000525469 ZC3H6P61129 1189 aaKnown RBP6.92□□□□□ -1.3
CD44-218ENST00000525469 CTDSPL2Q05D32 466 aa6.92□□□□□ -1.3
CD44-218ENST00000525469 TNS4Q8IZW8 715 aa6.92□□□□□ -1.3
CD44-218ENST00000525469 YTHDC1Q96MU7 727 aaKnown RBP6.92□□□□□ -1.3
CD44-218ENST00000525469 THRAP3Q9Y2W1 955 aaKnown RBP6.92□□□□□ -1.3
CD44-218ENST00000525469 TRPM3Q9HCF6 1732 aaPredicted RBP6.92□□□□□ -1.3
CD44-218ENST00000525469 KIAA0232Q92628 1395 aa6.92□□□□□ -1.3
CD44-218ENST00000525469 ABCC11Q96J66 1382 aa6.92□□□□□ -1.3
CD44-218ENST00000525469 PLEKHH1Q9ULM0 1364 aa6.92□□□□□ -1.3
CD44-218ENST00000525469 PARP4Q9UKK3 1724 aaKnown RBP6.91□□□□□ -1.3
CD44-218ENST00000525469 AKAP12Q02952 1782 aa6.91□□□□□ -1.3
CD44-218ENST00000525469 APBB1O00213 710 aa6.91□□□□□ -1.3
CD44-218ENST00000525469 ST8SIA5O15466 376 aa6.91□□□□□ -1.3
CD44-218ENST00000525469 RFC5P40937 340 aa6.91□□□□□ -1.3
CD44-218ENST00000525469 ZNF526Q8TF50 670 aaPredicted RBP6.91□□□□□ -1.3
CD44-218ENST00000525469 FKBPLQ9UIM3 349 aa6.91□□□□□ -1.3
CD44-218ENST00000525469 ATP10DQ9P241 1426 aa6.91□□□□□ -1.3
CD44-218ENST00000525469 USP17L8P0C7I0 530 aa6.9□□□□□ -1.3
CD44-218ENST00000525469 SAFB2Q14151 953 aaKnown RBP eCLIP6.9□□□□□ -1.3
CD44-218ENST00000525469 TXNRD1Q16881 649 aa6.9□□□□□ -1.3
CD44-218ENST00000525469 GLIPR1L2Q4G1C9 344 aa6.9□□□□□ -1.3
CD44-218ENST00000525469 TMEM132EQ6IEE7 984 aa6.9□□□□□ -1.3
CD44-218ENST00000525469 LARP1Q6PKG0 1096 aaKnown RBP6.9□□□□□ -1.3
CD44-218ENST00000525469 NGDNQ8NEJ9 315 aaKnown RBP6.9□□□□□ -1.3
CD44-218ENST00000525469 SENP2Q9HC62 589 aa6.9□□□□□ -1.3
CD44-218ENST00000525469 TLL2Q9Y6L7 1015 aa6.9□□□□□ -1.3
CD44-218ENST00000525469 ROCK1Q13464 1354 aa6.9□□□□□ -1.31
CD44-218ENST00000525469 SSH2Q76I76 1423 aa6.9□□□□□ -1.31
CD44-218ENST00000525469 CRYBG1Q9Y4K1 1723 aa6.9□□□□□ -1.31
CD44-218ENST00000525469 ADH1CP00326 375 aa6.89□□□□□ -1.31
CD44-218ENST00000525469 DDB1Q16531 1140 aa6.89□□□□□ -1.31
CD44-218ENST00000525469 COL13A1Q5TAT6 717 aaPredicted RBP6.89□□□□□ -1.31
CD44-218ENST00000525469 PDXDC2PQ6P474 469 aa6.89□□□□□ -1.31
CD44-218ENST00000525469 FOXJ1Q92949 421 aa6.89□□□□□ -1.31
CD44-218ENST00000525469 SIRT1Q96EB6 747 aa6.89□□□□□ -1.31
CD44-218ENST00000525469 POGKQ9P215 609 aa6.89□□□□□ -1.31
CD44-218ENST00000525469 CDV3Q9UKY7 258 aaKnown RBP6.89□□□□□ -1.31
CD44-218ENST00000525469 DHX57Q6P158 1386 aaKnown RBP6.89□□□□□ -1.31
CD44-218ENST00000525469 TOPAZ1Q8N9V7 1692 aa6.88□□□□□ -1.31
CD44-218ENST00000525469 ANKARQ7Z5J8 1434 aa6.88□□□□□ -1.31
CD44-218ENST00000525469 YTHDC2Q9H6S0 1430 aaKnown RBP6.88□□□□□ -1.31
CD44-218ENST00000525469 MAGEB6P1A0A0J9YX57 407 aa6.88□□□□□ -1.31
CD44-218ENST00000525469 ITGAEP38570 1179 aa6.88□□□□□ -1.31
CD44-218ENST00000525469 PTK2Q05397 1052 aa6.88□□□□□ -1.31
CD44-218ENST00000525469 NR5A1Q13285 461 aa6.88□□□□□ -1.31
CD44-218ENST00000525469 ARID5BQ14865 1188 aa6.88□□□□□ -1.31
CD44-218ENST00000525469 SH3BP5LQ7L8J4 393 aa6.88□□□□□ -1.31
CD44-218ENST00000525469 LRRN4Q8WUT4 740 aa6.88□□□□□ -1.31
CD44-218ENST00000525469 HPS1Q92902 700 aa6.88□□□□□ -1.31
CD44-218ENST00000525469 KIFC2Q96AC6 838 aa6.88□□□□□ -1.31
CD44-218ENST00000525469 CDK15Q96Q40 435 aa6.88□□□□□ -1.31
CD44-218ENST00000525469 GPSM3Q9Y4H4 160 aa6.88□□□□□ -1.31
CD44-218ENST00000525469 PEAK1Q9H792 1746 aa6.87□□□□□ -1.31
CD44-218ENST00000525469 PHRF1Q9P1Y6 1649 aaKnown RBP6.87□□□□□ -1.31
CD44-218ENST00000525469 EIF3AQ14152 1382 aaKnown RBP6.87□□□□□ -1.31
CD44-218ENST00000525469 ADGRF5Q8IZF2 1346 aa6.87□□□□□ -1.31
CD44-218ENST00000525469 NNTQ13423 1086 aa6.87□□□□□ -1.31
CD44-218ENST00000525469 ZBTB33Q86T24 672 aa6.87□□□□□ -1.31
CD44-218ENST00000525469 TRMT44Q8IYL2 757 aaKnown RBP6.87□□□□□ -1.31
CD44-218ENST00000525469 SLC10A4Q96EP9 437 aa6.87□□□□□ -1.31
CD44-218ENST00000525469 ARHGAP9Q9BRR9 750 aa6.87□□□□□ -1.31
CD44-218ENST00000525469 MAP4K5Q9Y4K4 846 aa6.87□□□□□ -1.31
CD44-218ENST00000525469 ANKRD30BQ9BXX2 1392 aa6.86□□□□□ -1.31
CD44-218ENST00000525469 FANCIQ9NVI1 1328 aa6.86□□□□□ -1.31
CD44-218ENST00000525469 CAPN5O15484 640 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms