RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 CWF19L2Q2TBE0 894 aaKnown RBP16.41■□□□□ 0.22
CPNE3-205ENST00000522240 CCDC191Q8NCU4 936 aa16.41■□□□□ 0.22
CPNE3-205ENST00000522240 CCDC136Q96JN2 1154 aa16.41■□□□□ 0.22
CPNE3-205ENST00000522240 ISCA1Q9BUE6 129 aa16.41■□□□□ 0.22
CPNE3-205ENST00000522240 USP44Q9H0E7 712 aa16.41■□□□□ 0.22
CPNE3-205ENST00000522240 ZNF652Q9Y2D9 606 aa16.41■□□□□ 0.22
CPNE3-205ENST00000522240 COL24A1Q17RW2 1714 aa16.4■□□□□ 0.22
CPNE3-205ENST00000522240 GRM8O00222 908 aa16.4■□□□□ 0.22
CPNE3-205ENST00000522240 UBTFL1P0CB47 393 aaPredicted RBP16.4■□□□□ 0.22
CPNE3-205ENST00000522240 GCKRQ14397 625 aa16.4■□□□□ 0.22
CPNE3-205ENST00000522240 TBC1D2BQ9UPU7 963 aa16.4■□□□□ 0.22
CPNE3-205ENST00000522240 HDAC5Q9UQL6 1122 aa16.4■□□□□ 0.22
CPNE3-205ENST00000522240 GNAI2P04899 355 aa16.39■□□□□ 0.21
CPNE3-205ENST00000522240 CLEC4GQ6UXB4 293 aa16.39■□□□□ 0.21
CPNE3-205ENST00000522240 CWC25Q9NXE8 425 aaPredicted RBP16.39■□□□□ 0.21
CPNE3-205ENST00000522240 NARFQ9UHQ1 456 aa16.39■□□□□ 0.21
CPNE3-205ENST00000522240 HLFQ16534 295 aa16.38■□□□□ 0.21
CPNE3-205ENST00000522240 AKT1S1Q96B36 256 aa16.38■□□□□ 0.21
CPNE3-205ENST00000522240 ARXQ96QS3 562 aa16.38■□□□□ 0.21
CPNE3-205ENST00000522240 C9orf78Q9NZ63 289 aaPredicted RBP16.38■□□□□ 0.21
CPNE3-205ENST00000522240 PCDHB15Q9Y5E8 787 aa16.38■□□□□ 0.21
CPNE3-205ENST00000522240 USP42Q9H9J4 1324 aaKnown RBP16.38■□□□□ 0.21
CPNE3-205ENST00000522240 LAMB2P55268 1798 aa16.37■□□□□ 0.21
CPNE3-205ENST00000522240 ATP5J2-PTCD1G3V325 749 aa16.37■□□□□ 0.21
CPNE3-205ENST00000522240 B4GALNT3Q6L9W6 998 aa16.37■□□□□ 0.21
CPNE3-205ENST00000522240 SPDYE2BA6NHP3 402 aa16.36■□□□□ 0.21
CPNE3-205ENST00000522240 SPDYE6P0CI01 402 aa16.36■□□□□ 0.21
CPNE3-205ENST00000522240 HDAC1Q13547 482 aaPredicted RBP16.36■□□□□ 0.21
CPNE3-205ENST00000522240 SPDYE2Q495Y8 402 aa16.36■□□□□ 0.21
CPNE3-205ENST00000522240 PARP10Q53GL7 1025 aa16.36■□□□□ 0.21
CPNE3-205ENST00000522240 TRAPPC3LQ5T215 181 aa16.36■□□□□ 0.21
CPNE3-205ENST00000522240 AMIGO3Q86WK7 504 aa16.36■□□□□ 0.21
CPNE3-205ENST00000522240 RPAP2Q8IXW5 612 aaPredicted RBP16.36■□□□□ 0.21
CPNE3-205ENST00000522240 ZNF34Q8IZ26 560 aa16.36■□□□□ 0.21
CPNE3-205ENST00000522240 ANKRD44Q8N8A2 993 aa16.36■□□□□ 0.21
CPNE3-205ENST00000522240 C1orf115Q9H7X2 142 aa16.36■□□□□ 0.21
CPNE3-205ENST00000522240 KDM2BQ8NHM5 1336 aa16.36■□□□□ 0.21
CPNE3-205ENST00000522240 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.35■□□□□ 0.21
CPNE3-205ENST00000522240 ZPR1O75312 459 aa16.35■□□□□ 0.21
CPNE3-205ENST00000522240 NBPF7P0C2Y1 421 aaPredicted RBP16.35■□□□□ 0.21
CPNE3-205ENST00000522240 ZNF827Q17R98 1081 aa16.35■□□□□ 0.21
CPNE3-205ENST00000522240 CEP85Q6P2H3 762 aa16.35■□□□□ 0.21
CPNE3-205ENST00000522240 NLRP10Q86W26 655 aa16.35■□□□□ 0.21
CPNE3-205ENST00000522240 FLAD1Q8NFF5 587 aa16.35■□□□□ 0.21
CPNE3-205ENST00000522240 ARHGEF1Q92888 912 aaKnown RBP16.35■□□□□ 0.21
CPNE3-205ENST00000522240 LRRFIP2Q9Y608 721 aaKnown RBP16.35■□□□□ 0.21
CPNE3-205ENST00000522240 H7C1W4 665 aa16.34■□□□□ 0.21
CPNE3-205ENST00000522240 PHF14O94880 888 aa16.34■□□□□ 0.21
CPNE3-205ENST00000522240 PCCAP05165 728 aaPredicted RBP16.34■□□□□ 0.21
CPNE3-205ENST00000522240 RFC4P35249 363 aa16.34■□□□□ 0.21
CPNE3-205ENST00000522240 CASP7P55210 303 aa16.34■□□□□ 0.21
CPNE3-205ENST00000522240 CENPQQ7L2Z9 268 aaPredicted RBP16.34■□□□□ 0.21
CPNE3-205ENST00000522240 RWDD1Q9H446 243 aaPredicted RBP16.34■□□□□ 0.21
CPNE3-205ENST00000522240 SPON1Q9HCB6 807 aa16.34■□□□□ 0.21
CPNE3-205ENST00000522240 UBN2Q6ZU65 1347 aa16.34■□□□□ 0.21
CPNE3-205ENST00000522240 MTX1Q13505 466 aa16.33■□□□□ 0.2
CPNE3-205ENST00000522240 USPL1Q5W0Q7 1092 aa16.33■□□□□ 0.2
CPNE3-205ENST00000522240 ZBTB38Q8NAP3 1195 aaPredicted RBP16.33■□□□□ 0.2
CPNE3-205ENST00000522240 BCL2L12Q9HB09 334 aa16.33■□□□□ 0.2
CPNE3-205ENST00000522240 CDHR2Q9BYE9 1310 aa16.33■□□□□ 0.2
CPNE3-205ENST00000522240 HMMRO75330 724 aa16.32■□□□□ 0.2
CPNE3-205ENST00000522240 GPTP24298 496 aa16.32■□□□□ 0.2
CPNE3-205ENST00000522240 UBE3BQ7Z3V4 1068 aa16.32■□□□□ 0.2
CPNE3-205ENST00000522240 SUCLG2Q96I99 432 aa16.32■□□□□ 0.2
CPNE3-205ENST00000522240 TFCP2L1Q9NZI6 479 aa16.32■□□□□ 0.2
CPNE3-205ENST00000522240 SRP68Q9UHB9 627 aaKnown RBP16.32■□□□□ 0.2
CPNE3-205ENST00000522240 SMIM5Q71RC9 77 aa16.31■□□□□ 0.2
CPNE3-205ENST00000522240 SIRT2Q8IXJ6 389 aa16.31■□□□□ 0.2
CPNE3-205ENST00000522240 ANO8Q9HCE9 1232 aaPredicted RBP16.31■□□□□ 0.2
CPNE3-205ENST00000522240 STK32BQ9NY57 414 aa16.31■□□□□ 0.2
CPNE3-205ENST00000522240 NIP7Q9Y221 180 aaKnown RBP eCLIP16.31■□□□□ 0.2
CPNE3-205ENST00000522240 MYH3P11055 1940 aa16.31■□□□□ 0.2
CPNE3-205ENST00000522240 IGHDP01880 384 aa16.3■□□□□ 0.2
CPNE3-205ENST00000522240 ATP8B2P98198 1209 aa16.3■□□□□ 0.2
CPNE3-205ENST00000522240 RABL6Q3YEC7 729 aaPredicted RBP16.3■□□□□ 0.2
CPNE3-205ENST00000522240 PPP1R42Q7Z4L9 355 aa16.3■□□□□ 0.2
CPNE3-205ENST00000522240 PLA2G12BQ9BX93 195 aa16.3■□□□□ 0.2
CPNE3-205ENST00000522240 DDX60Q8IY21 1712 aaKnown RBP16.3■□□□□ 0.2
CPNE3-205ENST00000522240 CARMIL3Q8ND23 1372 aa16.29■□□□□ 0.2
CPNE3-205ENST00000522240 PNPLA7Q6ZV29 1317 aa16.29■□□□□ 0.2
CPNE3-205ENST00000522240 NTSR2O95665 410 aa16.29■□□□□ 0.2
CPNE3-205ENST00000522240 GYS1P13807 737 aa16.29■□□□□ 0.2
CPNE3-205ENST00000522240 SLC15A2Q16348 729 aa16.29■□□□□ 0.2
CPNE3-205ENST00000522240 KAZALD1Q96I82 304 aa16.29■□□□□ 0.2
CPNE3-205ENST00000522240 UTP14AQ9BVJ6 771 aaKnown RBP16.29■□□□□ 0.2
CPNE3-205ENST00000522240 BICC1Q9H694 974 aaKnown RBP16.29■□□□□ 0.2
CPNE3-205ENST00000522240 PPP1R1BQ9UD71 204 aaPredicted RBP16.29■□□□□ 0.2
CPNE3-205ENST00000522240 SH3TC1Q8TE82 1336 aa16.28■□□□□ 0.2
CPNE3-205ENST00000522240 HSP90B1P14625 803 aaKnown RBP16.28■□□□□ 0.2
CPNE3-205ENST00000522240 SUSD4Q5VX71 490 aa16.28■□□□□ 0.2
CPNE3-205ENST00000522240 TBC1D9BQ66K14 1250 aa16.28■□□□□ 0.2
CPNE3-205ENST00000522240 SMC5Q8IY18 1101 aa16.28■□□□□ 0.2
CPNE3-205ENST00000522240 SSH3Q8TE77 659 aa16.28■□□□□ 0.2
CPNE3-205ENST00000522240 GCC1Q96CN9 775 aa16.28■□□□□ 0.2
CPNE3-205ENST00000522240 NYXQ9GZU5 481 aa16.28■□□□□ 0.2
CPNE3-205ENST00000522240 TRMT112Q9UI30 125 aaKnown RBP16.28■□□□□ 0.2
CPNE3-205ENST00000522240 RIC1Q4ADV7 1423 aa16.28■□□□□ 0.2
CPNE3-205ENST00000522240 YY1P25490 414 aa16.27■□□□□ 0.2
CPNE3-205ENST00000522240 SETDB2Q96T68 719 aa16.27■□□□□ 0.2
CPNE3-205ENST00000522240 NRXN2Q9P2S2 1712 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms