RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 PCDH11YQ9BZA8 1340 aa12.1□□□□□ -0.47
MCF2-209ENST00000520602 PDCP20941 246 aa12.1□□□□□ -0.47
MCF2-209ENST00000520602 ANKRD1Q15327 319 aa12.1□□□□□ -0.47
MCF2-209ENST00000520602 TTLL7Q6ZT98 887 aa12.1□□□□□ -0.47
MCF2-209ENST00000520602 DBNDD2Q9BQY9 259 aa12.1□□□□□ -0.47
MCF2-209ENST00000520602 ATP10DQ9P241 1426 aa12.1□□□□□ -0.47
MCF2-209ENST00000520602 PLBD2Q8NHP8 589 aa12.09□□□□□ -0.47
MCF2-209ENST00000520602 ZNF594Q96JF6 807 aaPredicted RBP12.09□□□□□ -0.47
MCF2-209ENST00000520602 GJB2P29033 226 aa12.09□□□□□ -0.47
MCF2-209ENST00000520602 LRRC2Q9BYS8 371 aa12.09□□□□□ -0.47
MCF2-209ENST00000520602 SNX14Q9Y5W7 946 aa12.09□□□□□ -0.47
MCF2-209ENST00000520602 IDH1O75874 414 aaKnown RBP12.09□□□□□ -0.47
MCF2-209ENST00000520602 LDHAL6AQ6ZMR3 332 aa12.09□□□□□ -0.47
MCF2-209ENST00000520602 STK11IPQ8N1F8 1099 aa12.09□□□□□ -0.47
MCF2-209ENST00000520602 FAM89AQ96GI7 184 aa12.09□□□□□ -0.47
MCF2-209ENST00000520602 AOX1Q06278 1338 aa12.08□□□□□ -0.48
MCF2-209ENST00000520602 STX6O43752 255 aa12.08□□□□□ -0.48
MCF2-209ENST00000520602 MPHOSPH8Q99549 860 aa12.08□□□□□ -0.48
MCF2-209ENST00000520602 TLR7Q9NYK1 1049 aaKnown RBP12.08□□□□□ -0.48
MCF2-209ENST00000520602 ISY1Q9ULR0 285 aaKnown RBP12.08□□□□□ -0.48
MCF2-209ENST00000520602 TBC1D2BQ9UPU7 963 aa12.08□□□□□ -0.48
MCF2-209ENST00000520602 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.08□□□□□ -0.48
MCF2-209ENST00000520602 POLA2Q14181 598 aa12.08□□□□□ -0.48
MCF2-209ENST00000520602 KRT32Q14532 448 aa12.08□□□□□ -0.48
MCF2-209ENST00000520602 VPS37DQ86XT2 251 aa12.08□□□□□ -0.48
MCF2-209ENST00000520602 ACSBG1Q96GR2 724 aa12.08□□□□□ -0.48
MCF2-209ENST00000520602 UBR1Q8IWV7 1749 aa12.08□□□□□ -0.48
MCF2-209ENST00000520602 HSPA4P34932 840 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 PTH1RQ03431 593 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 CREB3L3Q68CJ9 461 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 NRKQ7Z2Y5 1582 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 RAD50Q92878 1312 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 ARHGAP23Q9P227 1491 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 TNNI3KQ59H18 835 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 BICDL1Q6ZP65 573 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 CCDC129Q6ZRS4 1044 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 DNAJC10Q8IXB1 793 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 FPGT-TNNI3KV9GXZ4 949 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 SSH2Q76I76 1423 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 NFXL1Q6ZNB6 911 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 TSPY26PQ9H489 355 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 SH2B1Q9NRF2 756 aaPredicted RBP12.07□□□□□ -0.48
MCF2-209ENST00000520602 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.07□□□□□ -0.48
MCF2-209ENST00000520602 CCDC171Q6TFL3 1326 aa12.07□□□□□ -0.48
MCF2-209ENST00000520602 IGKV5-2P06315 115 aa12.06□□□□□ -0.48
MCF2-209ENST00000520602 KIAA2012Q0VF49 1180 aa12.06□□□□□ -0.48
MCF2-209ENST00000520602 BRINP3Q76B58 766 aa12.06□□□□□ -0.48
MCF2-209ENST00000520602 RASEFQ8IZ41 740 aa12.06□□□□□ -0.48
MCF2-209ENST00000520602 ZNF335Q9H4Z2 1342 aaPredicted RBP12.06□□□□□ -0.48
MCF2-209ENST00000520602 HAND2P61296 217 aa12.06□□□□□ -0.48
MCF2-209ENST00000520602 FBXW7Q969H0 707 aa12.06□□□□□ -0.48
MCF2-209ENST00000520602 AKAP2Q9Y2D5 859 aa12.06□□□□□ -0.48
MCF2-209ENST00000520602 SLIT1O75093 1534 aa12.06□□□□□ -0.48
MCF2-209ENST00000520602 KRT85P78386 507 aa12.06□□□□□ -0.48
MCF2-209ENST00000520602 ZSCAN23Q3MJ62 389 aa12.06□□□□□ -0.48
MCF2-209ENST00000520602 TEX13AQ9BXU3 409 aaPredicted RBP12.06□□□□□ -0.48
MCF2-209ENST00000520602 TFIP11Q9UBB9 837 aaKnown RBP12.06□□□□□ -0.48
MCF2-209ENST00000520602 ADCY9O60503 1353 aa12.06□□□□□ -0.48
MCF2-209ENST00000520602 C1orf167Q5SNV9 1468 aa12.06□□□□□ -0.48
MCF2-209ENST00000520602 IL15P40933 162 aaPredicted RBP12.05□□□□□ -0.48
MCF2-209ENST00000520602 PI4K2BQ8TCG2 481 aa12.05□□□□□ -0.48
MCF2-209ENST00000520602 NEK1Q96PY6 1258 aa12.05□□□□□ -0.48
MCF2-209ENST00000520602 EPHA10Q5JZY3 1008 aa12.05□□□□□ -0.48
MCF2-209ENST00000520602 FAM43AQ8N2R8 423 aa12.05□□□□□ -0.48
MCF2-209ENST00000520602 U3KPZ7 1027 aaPredicted RBP12.05□□□□□ -0.48
MCF2-209ENST00000520602 SPATA31A3Q5VYP0 1347 aa12.05□□□□□ -0.48
MCF2-209ENST00000520602 SASH1O94885 1247 aa12.05□□□□□ -0.48
MCF2-209ENST00000520602 CCT2P78371 535 aaKnown RBP12.05□□□□□ -0.48
MCF2-209ENST00000520602 RRP12Q5JTH9 1297 aaKnown RBP12.05□□□□□ -0.48
MCF2-209ENST00000520602 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.05□□□□□ -0.48
MCF2-209ENST00000520602 CNPY2Q9Y2B0 182 aa12.05□□□□□ -0.48
MCF2-209ENST00000520602 NRXN3Q9Y4C0 1643 aa12.05□□□□□ -0.48
MCF2-209ENST00000520602 ANKRD18BA2A2Z9 1011 aa12.04□□□□□ -0.48
MCF2-209ENST00000520602 MCMDC2Q4G0Z9 681 aa12.04□□□□□ -0.48
MCF2-209ENST00000520602 HSP90AB3PQ58FF7 597 aa12.04□□□□□ -0.48
MCF2-209ENST00000520602 CPLX2Q6PUV4 134 aaKnown RBP12.04□□□□□ -0.48
MCF2-209ENST00000520602 BRF1Q92994 677 aa12.04□□□□□ -0.48
MCF2-209ENST00000520602 CEMIPQ8WUJ3 1361 aa12.04□□□□□ -0.48
MCF2-209ENST00000520602 ZSCAN22P10073 491 aaPredicted RBP12.04□□□□□ -0.48
MCF2-209ENST00000520602 CCDC173Q0VFZ6 552 aa12.04□□□□□ -0.48
MCF2-209ENST00000520602 USP48Q86UV5 1035 aa12.04□□□□□ -0.48
MCF2-209ENST00000520602 INTS4Q96HW7 963 aaKnown RBP12.04□□□□□ -0.48
MCF2-209ENST00000520602 PAG1Q9NWQ8 432 aa12.04□□□□□ -0.48
MCF2-209ENST00000520602 ANKRD26Q9UPS8 1709 aa12.04□□□□□ -0.48
MCF2-209ENST00000520602 FER1L4A9Z1Z3 1794 aa12.04□□□□□ -0.48
MCF2-209ENST00000520602 A0A0D9SFI3 127 aa12.04□□□□□ -0.48
MCF2-209ENST00000520602 GUCY1B3Q02153 619 aa12.04□□□□□ -0.48
MCF2-209ENST00000520602 HELBQ8NG08 1087 aaPredicted RBP12.04□□□□□ -0.48
MCF2-209ENST00000520602 RIMS1Q86UR5 1692 aaKnown RBP12.03□□□□□ -0.48
MCF2-209ENST00000520602 RGS12O14924 1447 aa12.03□□□□□ -0.48
MCF2-209ENST00000520602 SYT1P21579 422 aa12.03□□□□□ -0.48
MCF2-209ENST00000520602 SYNE3Q6ZMZ3 975 aa12.03□□□□□ -0.48
MCF2-209ENST00000520602 ASAP1Q9ULH1 1129 aa12.03□□□□□ -0.48
MCF2-209ENST00000520602 ESPNB1AK53 854 aa12.03□□□□□ -0.48
MCF2-209ENST00000520602 RUFY3Q7L099 469 aa12.03□□□□□ -0.48
MCF2-209ENST00000520602 CHST3Q7LGC8 479 aa12.03□□□□□ -0.48
MCF2-209ENST00000520602 RAB11FIP4Q86YS3 637 aa12.03□□□□□ -0.48
MCF2-209ENST00000520602 SPATA32Q96LK8 384 aa12.03□□□□□ -0.48
MCF2-209ENST00000520602 A0A1B0GUL7 405 aa12.03□□□□□ -0.48
MCF2-209ENST00000520602 ERVV-2B6SEH9 535 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms