RNA–Protein interactions for RNA: ENST00000518877.1

PCM1-208, Transcript of pericentriolar material 1, human

TSL 3

Gene PCM1, Length 316 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-208	ENST00000518877	HIRA	P54198	1017 aa	Predicted RBP	6.61	□□□□□ -1.35
PCM1-208	ENST00000518877	SHISA2	Q6UWI4	295 aa		6.61	□□□□□ -1.35
PCM1-208	ENST00000518877	PNMA5	Q96PV4	448 aa		6.61	□□□□□ -1.35
PCM1-208	ENST00000518877	SLC6A14	Q9UN76	642 aa		6.61	□□□□□ -1.35
PCM1-208	ENST00000518877	USP17L3	A6NCW0	530 aa		6.6	□□□□□ -1.35
PCM1-208	ENST00000518877	USP17L4	A6NCW7	530 aa		6.6	□□□□□ -1.35
PCM1-208	ENST00000518877	CLDN10	P78369	228 aa		6.6	□□□□□ -1.35
PCM1-208	ENST00000518877	LRP8	Q14114	963 aa		6.6	□□□□□ -1.35
PCM1-208	ENST00000518877	HIF1A	Q16665	826 aa		6.6	□□□□□ -1.35
PCM1-208	ENST00000518877	USP17L2	Q6R6M4	530 aa		6.6	□□□□□ -1.35
PCM1-208	ENST00000518877	USP17L1	Q7RTZ2	530 aa		6.6	□□□□□ -1.35
PCM1-208	ENST00000518877	LENG1	Q96BZ8	264 aa	Predicted RBP	6.6	□□□□□ -1.35
PCM1-208	ENST00000518877	NGLY1	Q96IV0	654 aa		6.6	□□□□□ -1.35
PCM1-208	ENST00000518877	PSAPL1	Q6NUJ1	521 aa		6.59	□□□□□ -1.35
PCM1-208	ENST00000518877	BTLA	Q7Z6A9	289 aa		6.59	□□□□□ -1.35
PCM1-208	ENST00000518877	DMRTC2	Q8IXT2	367 aa	Predicted RBP	6.59	□□□□□ -1.35
PCM1-208	ENST00000518877	ALDH16A1	Q8IZ83	802 aa		6.59	□□□□□ -1.35
PCM1-208	ENST00000518877	OGFOD1	Q8N543	542 aa		6.59	□□□□□ -1.35
PCM1-208	ENST00000518877	TSEN2	Q8NCE0	465 aa	Known RBP	6.59	□□□□□ -1.35
PCM1-208	ENST00000518877	DNAJB12	Q9NXW2	375 aa	Known RBP	6.59	□□□□□ -1.35
PCM1-208	ENST00000518877	RAD21	O60216	631 aa		6.58	□□□□□ -1.36
PCM1-208	ENST00000518877	RGS9	O75916	674 aa	Predicted RBP	6.58	□□□□□ -1.36
PCM1-208	ENST00000518877	PLEKHM2	Q8IWE5	1019 aa		6.58	□□□□□ -1.36
PCM1-208	ENST00000518877	FMR1NB	Q8N0W7	255 aa	Predicted RBP	6.58	□□□□□ -1.36
PCM1-208	ENST00000518877	LARGE2	Q8N3Y3	721 aa		6.58	□□□□□ -1.36
PCM1-208	ENST00000518877	CHMP7	Q8WUX9	453 aa	Predicted RBP	6.58	□□□□□ -1.36
PCM1-208	ENST00000518877	ZNF594	Q96JF6	807 aa	Predicted RBP	6.58	□□□□□ -1.36
PCM1-208	ENST00000518877	PALM3	A6NDB9	673 aa	Predicted RBP	6.57	□□□□□ -1.36
PCM1-208	ENST00000518877		M0R2N6	131 aa		6.57	□□□□□ -1.36
PCM1-208	ENST00000518877	AFF1	P51825	1210 aa	Known RBP	6.57	□□□□□ -1.36
PCM1-208	ENST00000518877	POTEA	Q6S8J7	498 aa		6.57	□□□□□ -1.36
PCM1-208	ENST00000518877	KRTAP1-3	Q8IUG1	177 aa		6.57	□□□□□ -1.36
PCM1-208	ENST00000518877	POM121	Q96HA1	1249 aa		6.57	□□□□□ -1.36
PCM1-208	ENST00000518877	EFCC1	Q9HA90	598 aa		6.57	□□□□□ -1.36
PCM1-208	ENST00000518877	MKRN1	Q9UHC7	482 aa	Known RBP	6.57	□□□□□ -1.36
PCM1-208	ENST00000518877	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	6.57	□□□□□ -1.36
PCM1-208	ENST00000518877	ATAD2	Q6PL18	1390 aa		6.57	□□□□□ -1.36
PCM1-208	ENST00000518877	POM121C	A8CG34	1229 aa		6.56	□□□□□ -1.36
PCM1-208	ENST00000518877	HYAL3	O43820	417 aa	Predicted RBP	6.56	□□□□□ -1.36
PCM1-208	ENST00000518877	NFKB1	P19838	968 aa		6.56	□□□□□ -1.36
PCM1-208	ENST00000518877	CCIN	Q13939	588 aa		6.56	□□□□□ -1.36
PCM1-208	ENST00000518877	SCG3	Q8WXD2	468 aa	Known RBP	6.56	□□□□□ -1.36
PCM1-208	ENST00000518877	GSX2	Q9BZM3	304 aa		6.56	□□□□□ -1.36
PCM1-208	ENST00000518877	NAGPA	Q9UK23	515 aa		6.56	□□□□□ -1.36
PCM1-208	ENST00000518877	ATP9B	O43861	1147 aa		6.55	□□□□□ -1.36
PCM1-208	ENST00000518877	MSL1	Q68DK7	614 aa		6.55	□□□□□ -1.36
PCM1-208	ENST00000518877	FAM35A	Q86V20	835 aa		6.55	□□□□□ -1.36
PCM1-208	ENST00000518877	C21orf2	O43822	256 aa		6.54	□□□□□ -1.36
PCM1-208	ENST00000518877	CPB1	P15086	417 aa		6.54	□□□□□ -1.36
PCM1-208	ENST00000518877	HDGFL1	Q5TGJ6	251 aa		6.54	□□□□□ -1.36
PCM1-208	ENST00000518877	SIX5	Q8N196	739 aa		6.54	□□□□□ -1.36
PCM1-208	ENST00000518877	C2orf49	Q9BVC5	232 aa	Predicted RBP	6.54	□□□□□ -1.36
PCM1-208	ENST00000518877	PRKCSH	P14314	528 aa	Predicted RBP	6.53	□□□□□ -1.36
PCM1-208	ENST00000518877	EPB42	P16452	691 aa		6.53	□□□□□ -1.36
PCM1-208	ENST00000518877	PCSK7	Q16549	785 aa		6.53	□□□□□ -1.36
PCM1-208	ENST00000518877	LCE3B	Q5TA77	95 aa		6.53	□□□□□ -1.36
PCM1-208	ENST00000518877	STAG2	Q8N3U4	1231 aa		6.53	□□□□□ -1.36
PCM1-208	ENST00000518877	GAS2L2	Q8NHY3	880 aa		6.53	□□□□□ -1.36
PCM1-208	ENST00000518877	ADAMTS19	Q8TE59	1207 aa		6.53	□□□□□ -1.36
PCM1-208	ENST00000518877	UCN2	Q96RP3	112 aa		6.53	□□□□□ -1.36
PCM1-208	ENST00000518877	SSBP4	Q9BWG4	385 aa	Predicted RBP	6.53	□□□□□ -1.36
PCM1-208	ENST00000518877	TGFBR3L	H3BV60	316 aa		6.52	□□□□□ -1.37
PCM1-208	ENST00000518877	UBTF	P17480	764 aa	Known RBP	6.52	□□□□□ -1.37
PCM1-208	ENST00000518877	IREB2	P48200	963 aa	Known RBP	6.52	□□□□□ -1.37
PCM1-208	ENST00000518877	RTN1	Q16799	776 aa		6.52	□□□□□ -1.37
PCM1-208	ENST00000518877	IER5	Q5VY09	327 aa		6.52	□□□□□ -1.37
PCM1-208	ENST00000518877	KRT25	Q7Z3Z0	450 aa		6.52	□□□□□ -1.37
PCM1-208	ENST00000518877	WFDC8	Q8IUA0	241 aa		6.52	□□□□□ -1.37
PCM1-208	ENST00000518877	DTWD1	Q8N5C7	304 aa		6.52	□□□□□ -1.37
PCM1-208	ENST00000518877	WFDC12	Q8WWY7	111 aa		6.52	□□□□□ -1.37
PCM1-208	ENST00000518877	HINFP	Q9BQA5	517 aa		6.52	□□□□□ -1.37
PCM1-208	ENST00000518877	RASA1	P20936	1047 aa		6.51	□□□□□ -1.37
PCM1-208	ENST00000518877	SEC13	P55735	322 aa		6.51	□□□□□ -1.37
PCM1-208	ENST00000518877	ELMSAN1	Q6PJG2	1045 aa		6.51	□□□□□ -1.37
PCM1-208	ENST00000518877	FBXO11	Q86XK2	927 aa		6.51	□□□□□ -1.37
PCM1-208	ENST00000518877	LPIN3	Q9BQK8	851 aa		6.51	□□□□□ -1.37
PCM1-208	ENST00000518877	NOS3	P29474	1203 aa		6.5	□□□□□ -1.37
PCM1-208	ENST00000518877	MLLT1	Q03111	559 aa	Predicted RBP	6.5	□□□□□ -1.37
PCM1-208	ENST00000518877	PERM1	Q5SV97	790 aa		6.5	□□□□□ -1.37
PCM1-208	ENST00000518877	KRTAP4-12	Q9BQ66	201 aa		6.5	□□□□□ -1.37
PCM1-208	ENST00000518877	FRRS1L	Q9P0K9	344 aa		6.5	□□□□□ -1.37
PCM1-208	ENST00000518877	RNF112	Q9ULX5	631 aa		6.5	□□□□□ -1.37
PCM1-208	ENST00000518877	LGR5	O75473	907 aa		6.49	□□□□□ -1.37
PCM1-208	ENST00000518877	DKK1	O94907	266 aa		6.49	□□□□□ -1.37
PCM1-208	ENST00000518877	IDH3A	P50213	366 aa		6.49	□□□□□ -1.37
PCM1-208	ENST00000518877	DHX32	Q7L7V1	743 aa	Known RBP	6.49	□□□□□ -1.37
PCM1-208	ENST00000518877	RARA	P10276	462 aa		6.48	□□□□□ -1.37
PCM1-208	ENST00000518877	LARP1	Q6PKG0	1096 aa	Known RBP	6.48	□□□□□ -1.37
PCM1-208	ENST00000518877	IGF2-AS	Q6U949	168 aa		6.48	□□□□□ -1.37
PCM1-208	ENST00000518877	ILDR2	Q71H61	639 aa		6.48	□□□□□ -1.37
PCM1-208	ENST00000518877	MEGF10	Q96KG7	1140 aa		6.48	□□□□□ -1.37
PCM1-208	ENST00000518877	KLK14	Q9P0G3	267 aa		6.48	□□□□□ -1.37
PCM1-208	ENST00000518877	BCS1L	Q9Y276	419 aa		6.48	□□□□□ -1.37
PCM1-208	ENST00000518877	ZBTB42	B2RXF5	422 aa		6.47	□□□□□ -1.37
PCM1-208	ENST00000518877	EIF2AK2	P19525	551 aa	Known RBP	6.47	□□□□□ -1.37
PCM1-208	ENST00000518877	TARS	P26639	723 aa	Known RBP	6.47	□□□□□ -1.37
PCM1-208	ENST00000518877	ARID4A	P29374	1257 aa	Predicted RBP	6.47	□□□□□ -1.37
PCM1-208	ENST00000518877	ARSD	P51689	593 aa		6.47	□□□□□ -1.37
PCM1-208	ENST00000518877	PLAUR	Q03405	335 aa		6.47	□□□□□ -1.37
PCM1-208	ENST00000518877	GRIK5	Q16478	980 aa		6.47	□□□□□ -1.37

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms