RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 ZNF468Q5VIY5 522 aaPredicted RBP8.93□□□□□ -0.98
NUP54-218ENST00000515460 CLUAP1Q96AJ1 413 aa8.93□□□□□ -0.98
NUP54-218ENST00000515460 UCN2Q96RP3 112 aa8.93□□□□□ -0.98
NUP54-218ENST00000515460 PIK3R2O00459 728 aa8.92□□□□□ -0.98
NUP54-218ENST00000515460 DGKGP49619 791 aa8.92□□□□□ -0.98
NUP54-218ENST00000515460 ATP1A2P50993 1020 aa8.92□□□□□ -0.98
NUP54-218ENST00000515460 SAMD5Q5TGI4 173 aa8.92□□□□□ -0.98
NUP54-218ENST00000515460 ALYREFQ86V81 257 aaKnown RBP8.92□□□□□ -0.98
NUP54-218ENST00000515460 MKRN1Q9UHC7 482 aaKnown RBP8.92□□□□□ -0.98
NUP54-218ENST00000515460 HCN4Q9Y3Q4 1203 aa8.92□□□□□ -0.98
NUP54-218ENST00000515460 EML1O00423 815 aa8.91□□□□□ -0.98
NUP54-218ENST00000515460 EFSO43281 561 aa8.91□□□□□ -0.98
NUP54-218ENST00000515460 ATP9BO43861 1147 aa8.91□□□□□ -0.98
NUP54-218ENST00000515460 ADAM23O75077 832 aa8.91□□□□□ -0.98
NUP54-218ENST00000515460 PLEKHM2Q8IWE5 1019 aa8.91□□□□□ -0.98
NUP54-218ENST00000515460 OGFOD1Q8N543 542 aa8.91□□□□□ -0.98
NUP54-218ENST00000515460 RHPN1Q8TCX5 695 aa8.91□□□□□ -0.98
NUP54-218ENST00000515460 TSPAN10Q9H1Z9 355 aaPredicted RBP8.91□□□□□ -0.98
NUP54-218ENST00000515460 AVENQ9NQS1 362 aaPredicted RBP8.91□□□□□ -0.98
NUP54-218ENST00000515460 STRCQ7RTU9 1775 aa8.91□□□□□ -0.98
NUP54-218ENST00000515460 SETD1AO15047 1707 aaKnown RBP8.91□□□□□ -0.98
NUP54-218ENST00000515460 A6NJR5 290 aa8.9□□□□□ -0.98
NUP54-218ENST00000515460 SYT9Q86SS6 491 aa8.9□□□□□ -0.98
NUP54-218ENST00000515460 ZNF594Q96JF6 807 aaPredicted RBP8.9□□□□□ -0.98
NUP54-218ENST00000515460 BAG6P46379 1132 aa8.89□□□□□ -0.99
NUP54-218ENST00000515460 PIP4K2BP78356 416 aa8.89□□□□□ -0.99
NUP54-218ENST00000515460 SFSWAPQ12872 951 aaKnown RBP8.89□□□□□ -0.99
NUP54-218ENST00000515460 LAMC2Q13753 1193 aa8.89□□□□□ -0.99
NUP54-218ENST00000515460 POTEAQ6S8J7 498 aa8.89□□□□□ -0.99
NUP54-218ENST00000515460 C7orf43Q8WVR3 580 aa8.89□□□□□ -0.99
NUP54-218ENST00000515460 YEATS2Q9ULM3 1422 aa8.88□□□□□ -0.99
NUP54-218ENST00000515460 RIMS1Q86UR5 1692 aaKnown RBP8.88□□□□□ -0.99
NUP54-218ENST00000515460 GLI2P10070 1586 aa8.88□□□□□ -0.99
NUP54-218ENST00000515460 PALM3A6NDB9 673 aaPredicted RBP8.88□□□□□ -0.99
NUP54-218ENST00000515460 SFI1A8K8P3 1242 aa8.88□□□□□ -0.99
NUP54-218ENST00000515460 C1QTNF9BB2RNN3 333 aa8.88□□□□□ -0.99
NUP54-218ENST00000515460 FNBP4Q8N3X1 1017 aaPredicted RBP8.88□□□□□ -0.99
NUP54-218ENST00000515460 LARGE2Q8N3Y3 721 aa8.88□□□□□ -0.99
NUP54-218ENST00000515460 TSEN2Q8NCE0 465 aaKnown RBP8.88□□□□□ -0.99
NUP54-218ENST00000515460 NOP53Q9NZM5 478 aaKnown RBP8.88□□□□□ -0.99
NUP54-218ENST00000515460 CHMP3Q9Y3E7 222 aa8.88□□□□□ -0.99
NUP54-218ENST00000515460 GRIN2AQ12879 1464 aa8.88□□□□□ -0.99
NUP54-218ENST00000515460 PTPRTO14522 1441 aa8.88□□□□□ -0.99
NUP54-218ENST00000515460 NUP160Q12769 1436 aa8.88□□□□□ -0.99
NUP54-218ENST00000515460 FURINP09958 794 aa8.87□□□□□ -0.99
NUP54-218ENST00000515460 ALAS2P22557 587 aa8.87□□□□□ -0.99
NUP54-218ENST00000515460 PSMA6P60900 246 aaKnown RBP8.87□□□□□ -0.99
NUP54-218ENST00000515460 GLMNQ92990 594 aa8.87□□□□□ -0.99
NUP54-218ENST00000515460 SLC30A3Q99726 388 aa8.87□□□□□ -0.99
NUP54-218ENST00000515460 RBM19Q9Y4C8 960 aaKnown RBP8.87□□□□□ -0.99
NUP54-218ENST00000515460 IQSEC2Q5JU85 1478 aa8.87□□□□□ -0.99
NUP54-218ENST00000515460 ASXL2Q76L83 1435 aa8.87□□□□□ -0.99
NUP54-218ENST00000515460 ARID4BQ4LE39 1312 aaPredicted RBP8.86□□□□□ -0.99
NUP54-218ENST00000515460 FGD5Q6ZNL6 1462 aa8.86□□□□□ -0.99
NUP54-218ENST00000515460 CD163Q86VB7 1156 aa8.86□□□□□ -0.99
NUP54-218ENST00000515460 HSH2DQ96JZ2 352 aa8.86□□□□□ -0.99
NUP54-218ENST00000515460 CEP63Q96MT8 703 aa8.86□□□□□ -0.99
NUP54-218ENST00000515460 PLVAPQ9BX97 442 aa8.86□□□□□ -0.99
NUP54-218ENST00000515460 PHACTR1Q9C0D0 580 aa8.86□□□□□ -0.99
NUP54-218ENST00000515460 TFIP11Q9UBB9 837 aaKnown RBP8.86□□□□□ -0.99
NUP54-218ENST00000515460 WDR97A6NE52 1622 aa8.86□□□□□ -0.99
NUP54-218ENST00000515460 PBRM1Q86U86 1689 aa8.85□□□□□ -0.99
NUP54-218ENST00000515460 TEX14Q8IWB6 1497 aa8.85□□□□□ -0.99
NUP54-218ENST00000515460 ELOA3CA0A087WX78 387 aaPredicted RBP8.85□□□□□ -0.99
NUP54-218ENST00000515460 ELOA3DA6NLF2 546 aaPredicted RBP8.85□□□□□ -0.99
NUP54-218ENST00000515460 K7ELQ4 463 aaPredicted RBP8.85□□□□□ -0.99
NUP54-218ENST00000515460 PPP1R12BO60237 982 aaPredicted RBP8.85□□□□□ -0.99
NUP54-218ENST00000515460 ELOA3BQ3SY89 546 aa8.85□□□□□ -0.99
NUP54-218ENST00000515460 RAB44Q7Z6P3 723 aaPredicted RBP8.85□□□□□ -0.99
NUP54-218ENST00000515460 ELOA3Q8NG57 546 aa8.85□□□□□ -0.99
NUP54-218ENST00000515460 TRIM11Q96F44 468 aa8.85□□□□□ -0.99
NUP54-218ENST00000515460 CUX1P39880 1505 aa8.85□□□□□ -0.99
NUP54-218ENST00000515460 RASA1P20936 1047 aa8.84□□□□□ -0.99
NUP54-218ENST00000515460 CHRNA4P43681 627 aa8.84□□□□□ -0.99
NUP54-218ENST00000515460 BCORL1Q5H9F3 1711 aa8.84□□□□□ -0.99
NUP54-218ENST00000515460 C1orf53Q5VUE5 145 aa8.84□□□□□ -0.99
NUP54-218ENST00000515460 ZNF280CQ8ND82 737 aa8.84□□□□□ -0.99
NUP54-218ENST00000515460 BRD7Q9NPI1 651 aa8.84□□□□□ -0.99
NUP54-218ENST00000515460 GPC6Q9Y625 555 aaPredicted RBP8.84□□□□□ -0.99
NUP54-218ENST00000515460 MAP3K4Q9Y6R4 1608 aa8.83□□□□□ -1
NUP54-218ENST00000515460 SPEM2Q0P670 501 aa8.83□□□□□ -1
NUP54-218ENST00000515460 SIX5Q8N196 739 aa8.83□□□□□ -1
NUP54-218ENST00000515460 CALR3Q96L12 384 aaKnown RBP8.83□□□□□ -1
NUP54-218ENST00000515460 ANKIB1Q9P2G1 1089 aa8.83□□□□□ -1
NUP54-218ENST00000515460 M0R2N6 131 aa8.82□□□□□ -1
NUP54-218ENST00000515460 SIN3BO75182 1162 aa8.82□□□□□ -1
NUP54-218ENST00000515460 LGR5O75473 907 aa8.82□□□□□ -1
NUP54-218ENST00000515460 ERICH6Q7L0X2 663 aa8.82□□□□□ -1
NUP54-218ENST00000515460 NGLY1Q96IV0 654 aa8.82□□□□□ -1
NUP54-218ENST00000515460 SUSD3Q96L08 255 aa8.82□□□□□ -1
NUP54-218ENST00000515460 C21orf2O43822 256 aa8.81□□□□□ -1
NUP54-218ENST00000515460 DKK1O94907 266 aa8.81□□□□□ -1
NUP54-218ENST00000515460 HIRAP54198 1017 aaPredicted RBP8.81□□□□□ -1
NUP54-218ENST00000515460 SCG3Q8WXD2 468 aaKnown RBP8.81□□□□□ -1
NUP54-218ENST00000515460 ATAD2Q6PL18 1390 aa8.81□□□□□ -1
NUP54-218ENST00000515460 M0R082 166 aa8.8□□□□□ -1
NUP54-218ENST00000515460 SUPT5HO00267 1087 aaKnown RBP8.8□□□□□ -1
NUP54-218ENST00000515460 NEUROD1Q13562 356 aa8.8□□□□□ -1
NUP54-218ENST00000515460 ALDH16A1Q8IZ83 802 aa8.8□□□□□ -1
NUP54-218ENST00000515460 ZNF417Q8TAU3 575 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms