RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 UTP14AQ9BVJ6 771 aaKnown RBP16.47■□□□□ 0.23
CLCN3-210ENST00000515420 MYH16Q9H6N6 1097 aa16.47■□□□□ 0.23
CLCN3-210ENST00000515420 GOLGA2Q08379 1002 aa16.46■□□□□ 0.23
CLCN3-210ENST00000515420 ERFEQ4G0M1 354 aa16.46■□□□□ 0.23
CLCN3-210ENST00000515420 SOGA3Q5TF21 947 aa16.46■□□□□ 0.23
CLCN3-210ENST00000515420 NLRP10Q86W26 655 aa16.46■□□□□ 0.23
CLCN3-210ENST00000515420 NUTM1Q86Y26 1132 aa16.46■□□□□ 0.23
CLCN3-210ENST00000515420 STK31Q9BXU1 1019 aa16.46■□□□□ 0.23
CLCN3-210ENST00000515420 SALL2Q9Y467 1007 aaPredicted RBP16.46■□□□□ 0.23
CLCN3-210ENST00000515420 DDX58O95786 925 aaKnown RBP16.45■□□□□ 0.22
CLCN3-210ENST00000515420 ALDH1B1P30837 517 aa16.45■□□□□ 0.22
CLCN3-210ENST00000515420 TRIM28Q13263 835 aaKnown RBP16.45■□□□□ 0.22
CLCN3-210ENST00000515420 SLC10A5Q5PT55 438 aa16.45■□□□□ 0.22
CLCN3-210ENST00000515420 PRPF40BQ6NWY9 871 aaKnown RBP16.45■□□□□ 0.22
CLCN3-210ENST00000515420 ISCA1Q9BUE6 129 aa16.45■□□□□ 0.22
CLCN3-210ENST00000515420 PHAXQ9H814 394 aaKnown RBP16.44■□□□□ 0.22
CLCN3-210ENST00000515420 CCDC88AQ3V6T2 1871 aa16.44■□□□□ 0.22
CLCN3-210ENST00000515420 LTBP3Q9NS15 1303 aa16.44■□□□□ 0.22
CLCN3-210ENST00000515420 ZC3H4Q9UPT8 1303 aaKnown RBP16.44■□□□□ 0.22
CLCN3-210ENST00000515420 LAMB2P55268 1798 aa16.43■□□□□ 0.22
CLCN3-210ENST00000515420 DICER1Q9UPY3 1922 aaKnown RBP16.43■□□□□ 0.22
CLCN3-210ENST00000515420 HOXA10P31260 410 aaPredicted RBP16.43■□□□□ 0.22
CLCN3-210ENST00000515420 RIC3Q7Z5B4 369 aa16.43■□□□□ 0.22
CLCN3-210ENST00000515420 SH3TC1Q8TE82 1336 aa16.43■□□□□ 0.22
CLCN3-210ENST00000515420 C21orf2O43822 256 aa16.42■□□□□ 0.22
CLCN3-210ENST00000515420 LMNB1P20700 586 aa16.42■□□□□ 0.22
CLCN3-210ENST00000515420 C9orf131Q5VYM1 1079 aa16.42■□□□□ 0.22
CLCN3-210ENST00000515420 DIEXFQ68CQ4 756 aaKnown RBP16.42■□□□□ 0.22
CLCN3-210ENST00000515420 C7orf43Q8WVR3 580 aa16.42■□□□□ 0.22
CLCN3-210ENST00000515420 RPGRQ92834 1020 aaKnown RBP16.42■□□□□ 0.22
CLCN3-210ENST00000515420 NLRP3Q96P20 1036 aa16.42■□□□□ 0.22
CLCN3-210ENST00000515420 SPINK5Q9NQ38 1064 aaPredicted RBP16.42■□□□□ 0.22
CLCN3-210ENST00000515420 TRMT112Q9UI30 125 aaKnown RBP16.42■□□□□ 0.22
CLCN3-210ENST00000515420 DDX60Q8IY21 1712 aaKnown RBP16.42■□□□□ 0.22
CLCN3-210ENST00000515420 NFKBIEO00221 500 aa16.41■□□□□ 0.22
CLCN3-210ENST00000515420 VAMP4O75379 141 aa16.41■□□□□ 0.22
CLCN3-210ENST00000515420 EXOSC9Q06265 439 aaKnown RBP16.41■□□□□ 0.22
CLCN3-210ENST00000515420 CRAMP1Q96RY5 1269 aa16.41■□□□□ 0.22
CLCN3-210ENST00000515420 TIAM2Q8IVF5 1701 aa16.4■□□□□ 0.22
CLCN3-210ENST00000515420 RASSF7Q02833 373 aa16.4■□□□□ 0.22
CLCN3-210ENST00000515420 CCDC93Q567U6 631 aa16.4■□□□□ 0.22
CLCN3-210ENST00000515420 KSR2Q6VAB6 950 aa16.4■□□□□ 0.22
CLCN3-210ENST00000515420 RBM17Q96I25 401 aaKnown RBP16.4■□□□□ 0.22
CLCN3-210ENST00000515420 METTL22Q9BUU2 404 aaPredicted RBP16.4■□□□□ 0.22
CLCN3-210ENST00000515420 RNF181Q9P0P0 153 aa16.4■□□□□ 0.22
CLCN3-210ENST00000515420 E9PSI1 815 aa16.39■□□□□ 0.21
CLCN3-210ENST00000515420 SLC4A2P04920 1241 aa16.39■□□□□ 0.21
CLCN3-210ENST00000515420 HSP90B1P14625 803 aaKnown RBP16.39■□□□□ 0.21
CLCN3-210ENST00000515420 GRIPAP1Q4V328 841 aa16.39■□□□□ 0.21
CLCN3-210ENST00000515420 CC2D2BQ6DHV5 1058 aa16.39■□□□□ 0.21
CLCN3-210ENST00000515420 CCDC191Q8NCU4 936 aa16.39■□□□□ 0.21
CLCN3-210ENST00000515420 TAOK3Q9H2K8 898 aa16.39■□□□□ 0.21
CLCN3-210ENST00000515420 GPBP1L1Q9HC44 474 aaPredicted RBP16.39■□□□□ 0.21
CLCN3-210ENST00000515420 ATP5J2-PTCD1G3V325 749 aa16.38■□□□□ 0.21
CLCN3-210ENST00000515420 RTKN2Q8IZC4 609 aa16.38■□□□□ 0.21
CLCN3-210ENST00000515420 SNED1Q8TER0 1413 aa16.37■□□□□ 0.21
CLCN3-210ENST00000515420 PI4KAP2A4QPH2 592 aa16.37■□□□□ 0.21
CLCN3-210ENST00000515420 FLIIQ13045 1269 aa16.37■□□□□ 0.21
CLCN3-210ENST00000515420 C3orf67Q6ZVT6 689 aa16.37■□□□□ 0.21
CLCN3-210ENST00000515420 PI4KAP1Q8N8J0 262 aa16.37■□□□□ 0.21
CLCN3-210ENST00000515420 ZBTB38Q8NAP3 1195 aaPredicted RBP16.37■□□□□ 0.21
CLCN3-210ENST00000515420 MYD88Q99836 296 aa16.37■□□□□ 0.21
CLCN3-210ENST00000515420 MAP3K2Q9Y2U5 619 aa16.37■□□□□ 0.21
CLCN3-210ENST00000515420 PCCAP05165 728 aaPredicted RBP16.36■□□□□ 0.21
CLCN3-210ENST00000515420 NEXNQ0ZGT2 675 aa16.36■□□□□ 0.21
CLCN3-210ENST00000515420 CWC25Q9NXE8 425 aaPredicted RBP16.36■□□□□ 0.21
CLCN3-210ENST00000515420 ZNF219Q9P2Y4 722 aaPredicted RBP16.36■□□□□ 0.21
CLCN3-210ENST00000515420 HCLS1P14317 486 aaPredicted RBP16.35■□□□□ 0.21
CLCN3-210ENST00000515420 PRELPP51888 382 aa16.35■□□□□ 0.21
CLCN3-210ENST00000515420 FKBP4Q02790 459 aaKnown RBP eCLIP16.35■□□□□ 0.21
CLCN3-210ENST00000515420 SF3B3Q15393 1217 aaKnown RBP16.35■□□□□ 0.21
CLCN3-210ENST00000515420 SYNE4Q8N205 404 aa16.35■□□□□ 0.21
CLCN3-210ENST00000515420 FAM89AQ96GI7 184 aa16.35■□□□□ 0.21
CLCN3-210ENST00000515420 PSMD1Q99460 953 aa16.35■□□□□ 0.21
CLCN3-210ENST00000515420 TCERG1O14776 1098 aaKnown RBP16.34■□□□□ 0.21
CLCN3-210ENST00000515420 PPEF1O14829 653 aaPredicted RBP16.34■□□□□ 0.21
CLCN3-210ENST00000515420 SLFN5Q08AF3 891 aa16.34■□□□□ 0.21
CLCN3-210ENST00000515420 G2E3Q7L622 706 aa16.34■□□□□ 0.21
CLCN3-210ENST00000515420 TMC4Q7Z404 712 aa16.34■□□□□ 0.21
CLCN3-210ENST00000515420 ZNF428Q96B54 188 aa16.34■□□□□ 0.21
CLCN3-210ENST00000515420 MYH3P11055 1940 aa16.34■□□□□ 0.21
CLCN3-210ENST00000515420 ABCC4O15439 1325 aa16.34■□□□□ 0.21
CLCN3-210ENST00000515420 KDM2BQ8NHM5 1336 aa16.34■□□□□ 0.21
CLCN3-210ENST00000515420 LRRC37AA6NMS7 1700 aa16.33■□□□□ 0.21
CLCN3-210ENST00000515420 IRS4O14654 1257 aaPredicted RBP16.33■□□□□ 0.2
CLCN3-210ENST00000515420 BBOX1O75936 387 aa16.33■□□□□ 0.2
CLCN3-210ENST00000515420 FKBP5Q13451 457 aaPredicted RBP16.33■□□□□ 0.2
CLCN3-210ENST00000515420 DDX46Q7L014 1031 aaKnown RBP16.33■□□□□ 0.2
CLCN3-210ENST00000515420 MIER1Q8N108 512 aa16.33■□□□□ 0.2
CLCN3-210ENST00000515420 CDHR2Q9BYE9 1310 aa16.33■□□□□ 0.2
CLCN3-210ENST00000515420 IGKV5-2P06315 115 aa16.32■□□□□ 0.2
CLCN3-210ENST00000515420 GRAPQ13588 217 aa16.32■□□□□ 0.2
CLCN3-210ENST00000515420 GRAPLQ8TC17 118 aaPredicted RBP16.32■□□□□ 0.2
CLCN3-210ENST00000515420 ZNF526Q8TF50 670 aaPredicted RBP16.32■□□□□ 0.2
CLCN3-210ENST00000515420 DNAAF4Q8WXU2 420 aa16.32■□□□□ 0.2
CLCN3-210ENST00000515420 TMX4Q9H1E5 349 aaPredicted RBP16.32■□□□□ 0.2
CLCN3-210ENST00000515420 ATP6V0A2Q9Y487 856 aa16.32■□□□□ 0.2
CLCN3-210ENST00000515420 GLTPD2A6NH11 291 aa16.31■□□□□ 0.2
CLCN3-210ENST00000515420 NEURL1BA8MQ27 555 aa16.31■□□□□ 0.2
CLCN3-210ENST00000515420 TRMT2AQ8IZ69 625 aaKnown RBP16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms